mRNA_H-paniculata_contig269.7358.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig269.7358.1
Unique NamemRNA_H-paniculata_contig269.7358.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig269.7358.1 vs. uniprot
Match: D8LQG0_ECTSI (Guanylate cyclase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG0_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 5.460e-29
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 ICETSGSKFNRHTGVGIATGNMCTGLIGKSNFRSEYAVAGDMVNLAARLAAAAEKGNKGTLCDENTLKGLTGEV 222
            I  +S  +F R TGVGIATG+MCTG+IGK NFRSEYA+AGD+VNLAARLAAA+EKG  G LCDE TL+ LTGEV
Sbjct:    2 IVMSSDERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDEATLQSLTGEV 75
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BLAST of mRNA_H-paniculata_contig269.7358.1 vs. uniprot
Match: A0A835YYC7_9STRA (Guanylate cyclase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.560e-14
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 ICETSGSKFNRHTGVGIATGNMCTGLIGKSNF-RSEYAVAGDMVNLAARLAAAAEKGNKG-TLCDENTLK 204
            I ET+   F    GVGIA+G +C GLIGK++F R EYA+AGDMVNLAARLAA A+   +G  LCD+ T++
Sbjct:   33 IKETAKRDFRHRVGVGIASGQICCGLIGKADFSRCEYALAGDMVNLAARLAARADTEREGCVLCDQYTIE 102
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BLAST of mRNA_H-paniculata_contig269.7358.1 vs. uniprot
Match: A0A061RBI5_9CHLO (Guanylyl cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RBI5_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 5.810e-6
Identity = 30/64 (46.88%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    4 CETSGSKFNRHTGVGIATGNMCTGLIGKSNFRSEYAVAGDMVNLAARLAAAAEKGNKGTLCDEN 195
            C   G +  R T  G+A+GN   GL+G    R EYAV GD VN AARLA AA K  +  +C E+
Sbjct:  468 CVLQGQRDVRFT-AGLASGNCYCGLVGSPEIRCEYAVMGDTVNTAARLAGAAHKMGRPIICAES 530
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BLAST of mRNA_H-paniculata_contig269.7358.1 vs. uniprot
Match: A0A061RLZ7_9CHLO (Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RLZ7_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 2.810e-5
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:   43 VGIATGNMCTGLIGKSNFRSEYAVAGDMVNLAARLAAAAEKGNKGTLCDEN 195
             G+ATG+   GL+G    R EYAV GD VN AARLAA A K N+  LC ++
Sbjct:  187 AGLATGSCYCGLVGNPRTRCEYAVMGDTVNTAARLAAHAAKTNQALLCGQS 237
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BLAST of mRNA_H-paniculata_contig269.7358.1 vs. uniprot
Match: A0A061RZX5_9CHLO (Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZX5_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 2.860e-5
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:   43 VGIATGNMCTGLIGKSNFRSEYAVAGDMVNLAARLAAAAEKGNKGTLCDEN 195
             G+ATG+   GL+G    R EYAV GD VN AARLAA A K N+  LC ++
Sbjct:  544 AGLATGSCYCGLVGNPRTRCEYAVMGDTVNTAARLAAHAAKTNQALLCGQS 594
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BLAST of mRNA_H-paniculata_contig269.7358.1 vs. uniprot
Match: A0A7S1SUT1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SUT1_9CHLO)

HSP 1 Score: 48.9 bits (115), Expect = 7.230e-5
Identity = 32/70 (45.71%), Postives = 37/70 (52.86%), Query Frame = 1 
Query:    4 CETSGSKFNRH---TGV----GIATGNMCTGLIGKSNFRSEYAVAGDMVNLAARLAAAAEKGNKGTLCDE 192
            C  +  K  RH    GV    GI TG+   GL+G    R EYAV GD+VN AARLA  A K  +  LC E
Sbjct:   58 CIVAAQKVLRHMTAAGVRGTAGITTGHCFCGLVGDPKIRCEYAVMGDIVNTAARLAGGAAKRGESILCAE 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig269.7358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LQG0_ECTSI5.460e-2972.97Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A835YYC7_9STRA4.560e-1457.14Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A061RBI5_9CHLO5.810e-646.88Guanylyl cyclase n=1 Tax=Tetraselmis sp. GSL018 Ta... [more]
A0A061RLZ7_9CHLO2.810e-552.94Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 T... [more]
A0A061RZX5_9CHLO2.860e-552.94Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 T... [more]
A0A7S1SUT1_9CHLO7.230e-545.71Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig269contigH-paniculata_contig269:30915..31493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAdenylyl cyclase class-3/4/guanylyl cyclase
Ec32 orthologEc-10_005510.1
Exons2
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929808.0038013-CDS-H-paniculata_contig269:30914..310381622929808.0038013-CDS-H-paniculata_contig269:30914..31038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig269 30915..31038 -
1691481020.0284252-CDS-H-paniculata_contig269:30914..310381691481020.0284252-CDS-H-paniculata_contig269:30914..31038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig269 30915..31038 -
1622929808.0186856-CDS-H-paniculata_contig269:31395..314931622929808.0186856-CDS-H-paniculata_contig269:31395..31493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig269 31396..31493 -
1691481020.0402422-CDS-H-paniculata_contig269:31395..314931691481020.0402422-CDS-H-paniculata_contig269:31395..31493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig269 31396..31493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig269.7358.1prot_H-paniculata_contig269.7358.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig269 30915..31493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig269.7358.1

>prot_H-paniculata_contig269.7358.1 ID=prot_H-paniculata_contig269.7358.1|Name=mRNA_H-paniculata_contig269.7358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
ICETSGSKFNRHTGVGIATGNMCTGLIGKSNFRSEYAVAGDMVNLAARLA
AAAEKGNKGTLCDENTLKGLTGEV
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mRNA from alignment at H-paniculata_contig269:30915..31493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig269.7358.1 ID=mRNA_H-paniculata_contig269.7358.1|Name=mRNA_H-paniculata_contig269.7358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=579bp|location=Sequence derived from alignment at H-paniculata_contig269:30915..31493- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTGCGAGACCTCGGGCTCAAAATTCAATCGCCACACGGGCGTCGGAAT
TGCCACTGGCAACATGTGCACAGGCCTGATCGGAAAGTCAAACTTTAGGT
GAGAGCGGCGTTTTTATCCAGAGAGGATAACAGAGCGAGAGGGCCACATC
ATGCTGCACCAGAAAATAGACATGCGATTGGCATGACGCATGATTGAGAG
CAATATTTTATTGCGGAGATCCTTCAGCTTGGGGTTTCTCGGATATCGTC
CAGACGGGGCCGGTTCCATCCAAATATTCTCCTTTGAGGTCGAAGGTTGA
ACAATGTGAAGCTGTCTCTGTTTGTGTATTGGCTCTGTTCGCTTTGCATT
GCCCTGTAAATTTGCAGAACTCGGTTCCTGGGGAACAATCTTCCCCTTCG
TTTTGGAGATAACATTCAAGTTGAACTATGCCCGCGGTCCTCACCCTGAG
CACAGATCGGAGTATGCAGTGGCGGGTGACATGGTAAACCTGGCAGCTCG
ACTTGCGGCAGCTGCGGAAAAGGGGAACAAAGGGACGCTGTGTGATGAAA
ACACGCTCAAGGGCCTCACTGGAGAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig269:30915..31493-

>mRNA_H-paniculata_contig269.7358.1 ID=mRNA_H-paniculata_contig269.7358.1|Name=mRNA_H-paniculata_contig269.7358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig269:30915..31493- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTGCGAGACCTCGGGCTCAAAATTCAATCGCCACACGGGCGTCGGAAT
TGCCACTGGCAACATGTGCACAGGCCTGATCGGAAAGTCAAACTTTAGAT
TTGCGAGACCTCGGGCTCAAAATTCAATCGCCACACGGGCGTCGGAATTG
CCACTGGCAACATGTGCACAGGCCTGATCGGAAAGTCAAACTTTAGATCG
GAGTATGCAGTGGCGGGTGACATGGTAAACCTGGCAGCTCGACTTGCGGC
AGCTGCGGAAAAGGGGAACAAAGGGACGCTGTGTGATGAAAACACGCTCA
AGGGCCTCACTGGAGAGGTAATCGGAGTATGCAGTGGCGGGTGACATGGT
AAACCTGGCAGCTCGACTTGCGGCAGCTGCGGAAAAGGGGAACAAAGGGA
CGCTGTGTGATGAAAACACGCTCAAGGGCCTCACTGGAGAGGTA
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