mRNA_H-paniculata_contig2689.7354.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2689.7354.1
Unique NamemRNA_H-paniculata_contig2689.7354.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2689.7354.1 vs. uniprot
Match: A0A6H5L3F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F4_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 1.070e-99
Identity = 178/288 (61.81%), Postives = 207/288 (71.88%), Query Frame = 1 
Query:  355 SLCESKRASSRPVRTDELTPQAQARAKTLAAELVLTPPTAKDLVCIEERQLRHKAGDT---VAVSP-PCRHGFPQAFAFHPVGYKISSGLFRLSCPLLVKAIDKLEEDGGLEDVNDQLEVDVDLRQDFMAVNLAHGELRRRMVTGEHVKRMEAAMGKEDAELMLGSGITGVTPGKVGDAKCLHAHVADALMRGRESNAIGRVTLELLEDEGLHTSGCTECCQQCDVRIEETDITWRYTPQKNKQRLQQRKSRRKVLKAYI-------DAKAEDASQADCDANVPLRPE 1185
            S   SKR +SRPV TDELT  A+ RA  L    V TP T  DL CIEERQLRHKAG +   + VSP PCRHGFPQAFAF P G+K+SSGLFRLSCPLLV+AID LE++GG+EDVN +L  +  LR+DFMAVNLAHG LRRR+VT E +  +E  +GKE AE  L SGITGVT GKV DAKCLHAHVADALMRGR +NAIGR TLELLE  G+ T G   C +QC+ R+EET  +WRYTPQKNKQ+LQ RK RRK +KA I       + K +    AD  + +PL  E
Sbjct:   96 STLGSKRQNSRPVGTDELTQTARDRATALVEAYVPTPATEGDLRCIEERQLRHKAGASSRSMGVSPNPCRHGFPQAFAFDPCGHKVSSGLFRLSCPLLVQAIDLLEDEGGIEDVNARLASEEGLREDFMAVNLAHGMLRRRLVTPEKLGMVEETIGKEGAERFLDSGITGVTTGKVRDAKCLHAHVADALMRGRSANAIGRATLELLEARGVRTDGGDRCSEQCNYRVEETADSWRYTPQKNKQKLQMRKVRRKDMKACITNKEREQETKDDAVVDADSGSGLPLNGE 383
[Close]
BLAST of mRNA_H-paniculata_contig2689.7354.1 vs. uniprot
Match: D8LLL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL9_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 1.850e-81
Identity = 141/217 (64.98%), Postives = 165/217 (76.04%), Query Frame = 1 
Query:  529 VAVSP-PCRHGFPQAFAFHPVGYKISSGLFRLSCPLLVKAIDKLEEDGGLEDVNDQLEVDVDLRQDFMAVNLAHGELRRRMVTGEHVKRMEAAMGKEDAELMLGSGITGVTPGKVGDAKCLHAHVADALMRGRESNAIGRVTLELLEDEGLHTSGCTECCQQCDVRIEETDITWRYTPQKNKQRLQQRKSRRKVLKAYIDAKAEDASQADCDANVPL 1176
            + VSP PCRHGFPQAFAF P G+K+SSGLFRLSCPLLV+AID LE++GG+EDVN +L  +  LR+DFMAVNLAHG LRRR+VT + +  +E  +GKE A   L SGITGVTPGKV DAKCLHAHVADALMRGR +NAIGR TLELLE  G+ T G   C +QC+  +EET  +WRYTPQKNKQ+LQ RK RRK +KA I  K  D    D DA V +
Sbjct:    1 MGVSPNPCRHGFPQAFAFDPCGHKVSSGLFRLSCPLLVQAIDLLEDEGGIEDVNARLASEEGLREDFMAVNLAHGMLRRRLVTPDKMGLVEETIGKEGAGRFLDSGITGVTPGKVRDAKCLHAHVADALMRGRSANAIGRATLELLEARGVRTDGGDRCSEQCNYLVEETADSWRYTPQKNKQKLQMRKVRRKDMKACITKKERDRETKD-DAVVDV 216
[Close]
BLAST of mRNA_H-paniculata_contig2689.7354.1 vs. uniprot
Match: A0A6S9FG26_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9FG26_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.110e-47
Identity = 95/219 (43.38%), Postives = 139/219 (63.47%), Query Frame = 1 
Query:  466 PTAKDLVCIEERQLRHKAGDTVAVSPPCRHGFPQAFAFHPVGYKISSGLFRLSCPLLVKAIDKLEEDGGLEDVNDQLEVDVDLRQDFMAVNLAHGELRRRMVTG--EHVKRMEAAMGKEDAELMLGSGITGVTPGK-VGDAKCLHAHVADALMRGRESNAIGRVTLELLED-EGLHTSGCTECCQQCDVRIEETDITWRYTPQKNKQRLQQRKSRRKVL 1110
            PT +D+ CIE RQL H A +  +V   C++GFPQAF FHPV +K+SSGLFRLSCPLLV+A+D+ E +GG+ +++D      ++  DF   N    ++RR +V      +++++  +GK++AE  L SGI G+ P   + D KCLHAH AD L R    N IG+  L+ LE+ +G++  G  +C QQCDV   +    W Y P+KN+Q+L+  + RRK L
Sbjct:   65 PTPEDIDCIENRQLEHGA-NIFSVGQRCKYGFPQAFGFHPVEHKVSSGLFRLSCPLLVRAVDEWEAEGGVREMSDAARSSAEITDDFRETNQRISKIRRSIVESFPGGMEKVQQRLGKDNAERFLSSGIAGLGPNAGLSDVKCLHAHAADHLCRKDGGNIIGKEVLQRLEEKQGINVCGNDKCWQQCDVNHTQGPSNWHYLPRKNRQKLKATRRRRKEL 282
[Close]
BLAST of mRNA_H-paniculata_contig2689.7354.1 vs. uniprot
Match: A0A7S2SII3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SII3_9STRA)

HSP 1 Score: 169 bits (429), Expect = 9.950e-45
Identity = 95/222 (42.79%), Postives = 130/222 (58.56%), Query Frame = 1 
Query:  478 DLVCIEERQLRHKAGDTVAVSPPCR--HGFPQAFAFHPVGY-KISSGLFRLSCPLLVKAIDKLEEDGGLEDVNDQLEVDVDLRQDFMAVNLAHGELRRRMVTGEHVKRMEAAMGKEDAELMLGSGITGVTPGKVGDAKCLHAHVADALMRGRESNAIGRVTLELLEDEGLHTSGCTECCQQCDVRIEETDITWRYTPQKNKQRLQQRKSRRKVLKAYIDAKA 1134
            D  C+EERQLRH A   V V   CR  HGFPQA  F P+G  K  SGL RL+CP LVKAID+ E +G +++ N +L+ +   ++     N  H ELRR +V       +    G   A+  L +G+ G++P K  D KCLHA + D +    + N IG+  ++ L D G+   GC +C QQCDV  EETD TW+Y  QKN+ +L+Q+ SRRK+ K    AK+
Sbjct:   79 DRQCVEERQLRHSASQAVGVPVVCRCRHGFPQAVLFEPMGKNKPVSGLIRLTCPHLVKAIDEYEAEGAVKEFNKRLQGNQLWKESLQRTNDVHRELRRGLVGPSDHAALAERFGAAQAQAFLDAGLAGMSPTKNNDVKCLHAQLGDWMFH--DQNVIGKAVVQDLADRGVPIDGCEDCSQQCDVNREETDSTWKYVAQKNRSKLRQKVSRRKLQKQQEKAKS 298
[Close]
BLAST of mRNA_H-paniculata_contig2689.7354.1 vs. uniprot
Match: A0A7S2HF12_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HF12_9STRA)

HSP 1 Score: 166 bits (420), Expect = 5.270e-44
Identity = 93/219 (42.47%), Postives = 133/219 (60.73%), Query Frame = 1 
Query:  466 PTAKDLVCIEERQLRHKAGDTVAVSPPCRHGFPQAFAFHPVGYKISSGLFRLSCPLLVKAIDKLEEDGGLEDVNDQLEVDVDLRQDFMAVNLAHGELRRRMVTG--EHVKRMEAAMGKEDAELMLGSGITGV-TPGKVGDAKCLHAHVADALMRGRESNAIGRVTLELLEDE-GLHTSGCTECCQQCDVRIEETDITWRYTPQKNKQRLQQRKSRRKVL 1110
            PT  D+ CIE RQL H A +   V   C++GFPQAF FHPV +K+SSGLFRLSCPLLVKAID+ E +GG+ +++D      ++  DF   N    ++RR ++      +++++  +G++++E  L SGI G+     + D KCLHAHVAD L R    N IG+  L  L D+ G++  G   C QQCDV        W Y P+KN+Q+L+  + RRK +
Sbjct:   35 PTLSDINCIENRQLEHSA-NIFFVGKRCKYGFPQAFGFHPVEHKVSSGLFRLSCPLLVKAIDEWEGEGGVREMSDAARSSAEITADFEETNRRIAQIRRSIIDSFPGGMEKVQMHLGEDNSERYLSSGIAGLGLNAGLADVKCLHAHVADHLCRKDGGNRIGQEVLRRLADKRGVNVCGNENCWQQCDVNHNRGPSDWHYLPRKNRQKLKATRRRRKDM 252
[Close]
BLAST of mRNA_H-paniculata_contig2689.7354.1 vs. uniprot
Match: A0A7S2PD55_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PD55_9STRA)

HSP 1 Score: 154 bits (390), Expect = 7.540e-39
Identity = 95/228 (41.67%), Postives = 132/228 (57.89%), Query Frame = 1 
Query:  466 PTAKDLVCIEERQLRHKA--GDTVAVSPPCRHGFPQAFAFHPV-GYKISSGLFRLSCPLLVKAIDKLEEDGGLEDVNDQLEVDV--DLRQDFMAVNLAHGELRRRMVTGEHVKRMEAAMGKEDAELMLGSGITGVTPGKVGDAKCLHAHVADALMRGRESN---------AIGRVTLELLEDE-GLHTSGCTECCQQCDVRIEETDITWRYTPQKNKQRLQQRKSRRK 1104
            PT +DL  I+ERQ+ HK        VS PCRHGFPQAF FHP  G K+ SGLFRLSCPLLV+ ID+ E   G+ ++ D L  DV  D R+ +   N    ++R  +V  ++ K + + MG+ +A   + SGI G+   +  + KC+HAHVAD L R  +SN          IG   L +L+++ G+ T G   C QQC +R E+    W Y P+KN+Q L+  + RRK
Sbjct:  103 PTEQDLQTIQERQVCHKLEPSQVTCVSSPCRHGFPQAFGFHPTKGPKLVSGLFRLSCPLLVQQIDEWEGQSGVREMTDWLRNDVNGDKRKGYERANEMQKQIRSELVAEDYDK-LVSRMGEYNAAKFVESGIAGIPSSQTYNVKCIHAHVADHLCRSSQSNNTNTSTEGNIIGEHALNILQNQRGVSTLGNDVCWQQCSLRHEQLPSDWNYVPKKNRQGLRSTRQRRK 329
[Close]
BLAST of mRNA_H-paniculata_contig2689.7354.1 vs. uniprot
Match: K8YZM2_NANGC (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YZM2_NANGC)

HSP 1 Score: 154 bits (390), Expect = 4.600e-38
Identity = 99/272 (36.40%), Postives = 132/272 (48.53%), Query Frame = 1 
Query:  460 TPPTAKDLVCIEERQLRHKAGDTVAVSPPCRHGFPQAFAFHPVGYKISSGLFRLSCPLLVKAIDKLEED----------------------GGLEDVNDQLEVDVDLRQDFMAVNLAHGELRRRMVTGEHVKRMEAAMGKEDAELMLGSGITGVTPGKVGDAKCLHAHVAD------------------ALMRGRES-----------------NAIGRVTLELLE-DEGLHTSGCTECCQQCDVRIEETDITWRYTPQKNKQRLQQRKSRR 1101
            TP + +D+ CIE+RQL H           C HGFPQAF FHP     +SGLFRLSCPLLVKA+D+ E                        GGL++ N +LE    ++++F  VN  H  +RR +V  E ++     +G+   E +L SGI GV+P K GD KCLHAH+AD                  A++R +E                  NAIG    E L  +  +   G  EC QQC++  E T  +W Y P KNKQ+L+ R  RR
Sbjct:  111 TPASDEDIACIEQRQLGHPITCAGGPRQRCAHGFPQAFIFHPTKTTFNSGLFRLSCPLLVKAVDEFEAQVALCFRVGSPIHPFPSLPSLPPGGLQEFNRKLEKSPAMQREFRRVNARHSAIRRGLVDPEGLRSYVEKLGEAGVEQILASGIAGVSPTKTGDLKCLHAHLADYLCTRTGGGEGKGWGRGGAMLRAKEDVALAYRDISVALLSGYDNAIGEEVYEHLRTNRQIEVEGNAECWQQCNLSFERTPSSWWYVPVKNKQKLRSRYHRR 382
[Close]
BLAST of mRNA_H-paniculata_contig2689.7354.1 vs. uniprot
Match: A0A8J2S7V2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S7V2_9STRA)

HSP 1 Score: 148 bits (373), Expect = 3.930e-37
Identity = 86/217 (39.63%), Postives = 125/217 (57.60%), Query Frame = 1 
Query:  466 PTAKDLVCIEERQLRHKAGDT-VAVSPPCRHGFPQAFAFHPVGYKISSGLFRLSCPLLVKAIDKLEEDGGLEDVNDQLEVDVDLRQDFMAVNLAHGELRRRMVTGEHVKRMEAAMGKEDAELMLGSGITGVTPGKVGDAKCLHAHVADALMRGRESNAIGRVTLELLEDEGLHTSGCTECCQQCDVRIEETDITWRYTPQKNKQRLQQRKSRRKVLK 1113
            P+A D   +E+RQL H A    V     CRHG+PQA    P  +K  +G+ RL+CP L +A+D  E +G +  ++ +L  +   R     VN  H   R+ MV GE + R EA +G +    +L SGITG+TP K+ D KCLHA +AD L+     NA+G+  LE LE  G+  +G  +C +QC   ++     WRYTP+KNKQ+L+  ++R K L+
Sbjct:   34 PSAADADVVEQRQLGHPANMVGVPAVSLCRHGYPQAVLQDPGAHKFGAGMLRLTCPHLCEAVDAWEAEGAVRALSAELLAEDANRDALRKVNERHAVTRKSMVQGEALARAEARLGADTVRRVLDSGITGLTPSKLDDVKCLHAQLADELLS--RDNAVGKKVLEGLEARGVDPTGSEKCGEQCSGCVD----GWRYTPRKNKQKLRATRARHKKLR 244
[Close]
BLAST of mRNA_H-paniculata_contig2689.7354.1 vs. uniprot
Match: A0A7S2SIM8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIM8_9STRA)

HSP 1 Score: 131 bits (330), Expect = 4.860e-32
Identity = 71/177 (40.11%), Postives = 104/177 (58.76%), Query Frame = 1 
Query:  604 SGLFRLSCPLLVKAIDKLEEDGGLEDVNDQLEVDVDLRQDFMAVNLAHGELRRRMVTGEHVKRMEAAMGKEDAELMLGSGITGVTPGKVGDAKCLHAHVADALMRGRESNAIGRVTLELLEDEGLHTSGCTECCQQCDVRIEETDITWRYTPQKNKQRLQQRKSRRKVLKAYIDAKA 1134
            SGL RL+CP LVKAID+ E +G +++ N +L+ +   ++     N  H ELRR +V       +    G   A+  L +G+ G++P K  D KCLHA + D +    + N IG+  ++ L D G+   GC +C QQCDV  EETD TW+Y  QKN+ +L+Q+ SRRK+ K    AK+
Sbjct:    6 SGLIRLTCPHLVKAIDEYEAEGAVKEFNKRLQGNQLWKESLQRTNDVHRELRRGLVGPSDHAALAERFGAAQAQAFLDAGLAGMSPTKNNDVKCLHAQLGDWMFH--DQNVIGKAVVQDLADRGVPIDGCEDCSQQCDVNREETDSTWKYVAQKNRSKLRQKVSRRKLQKQQEKAKS 180
[Close]
BLAST of mRNA_H-paniculata_contig2689.7354.1 vs. uniprot
Match: A0A7S1UER6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UER6_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.870e-31
Identity = 97/247 (39.27%), Postives = 128/247 (51.82%), Query Frame = 1 
Query:  463 PPTAKDLVCIEERQLRHKAGDTVAVSPPCRHGFPQAFAFHP-VGYKISSGLFRLSCPLLVKAIDKLEEDGGLEDVNDQL----EVDVDLRQDFMAVNLAHGELRRRM-VTGEHVKRME---AAMGKEDAE-------LMLGSGITGVTPGKVGDAKCLHAHVADALMRGRESNAIGRVTLELLEDEGLHTSGCTECCQQCDVRIEETD-ITWRYTPQKNKQRLQQRKSRRKVLKAYIDAKAEDASQA 1152
            PPT  D   +EERQLRH           C+HGFPQAF   P  G ++ S   RL+CP LVKAID+ E + G+   N  L    E    +R      N  H  LR+R+  T     R+E   AA  ++D E        ++GSG  GV+     D KCLHAH AD L+RG  +NA+G   L  L    +  +G   C +QCD ++ E +  TW Y   KNKQ+LQQR S+RK  +A I  KA+   +A
Sbjct:   47 PPTEDDRRSLEERQLRHPGNIAAVPCTSCKHGFPQAFFSDPREGRRLHSATLRLTCPWLVKAIDEYEAEDGVRKFNADLTGENETAEAMRASLEDANTFHRNLRQRLFATPGGAARLEEYRAAAHEKDPENSEKFVAAVMGSGFIGVSKRNNLDVKCLHAHAADHLLRGG-ANAVGAEVLRRLP---VDPTGGERCYEQCDPKLAEVEGETWSYRSVKNKQKLQQRHSKRKDARAMIRQKAKRMKKA 289
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2689.7354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3F4_9PHAE1.070e-9961.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLL9_ECTSI1.850e-8164.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6S9FG26_9STRA1.110e-4743.38Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2SII3_9STRA9.950e-4542.79Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2HF12_9STRA5.270e-4442.47Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2PD55_9STRA7.540e-3941.67Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K8YZM2_NANGC4.600e-3836.40Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A8J2S7V2_9STRA3.930e-3739.63Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2SIM8_9STRA4.860e-3240.11Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1UER6_9STRA2.870e-3139.27Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2689contigH-paniculata_contig2689:12200..19671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.2
Seed ortholog evalue1.9e-40
Seed eggNOG ortholog2880.D8LLL9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF501)
EggNOG OGs2C2QW@1,2SDB4@2759
Ec32 ortholog descriptionProtein of unknown function DUF501
Ec32 orthologEc-04_005280.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1640
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2689.7354.1prot_H-paniculata_contig2689.7354.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2689 16933..19219 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.045404-UTR-H-paniculata_contig2689:12199..122321622929807.045404-UTR-H-paniculata_contig2689:12199..12232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2689 12200..12232 +
1691481019.543231-UTR-H-paniculata_contig2689:12199..122321691481019.543231-UTR-H-paniculata_contig2689:12199..12232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2689 12200..12232 +
1622929807.0701644-UTR-H-paniculata_contig2689:15193..155551622929807.0701644-UTR-H-paniculata_contig2689:15193..15555Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2689 15194..15555 +
1691481019.5617287-UTR-H-paniculata_contig2689:15193..155551691481019.5617287-UTR-H-paniculata_contig2689:15193..15555Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2689 15194..15555 +
1622929807.0854547-UTR-H-paniculata_contig2689:16103..164281622929807.0854547-UTR-H-paniculata_contig2689:16103..16428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2689 16104..16428 +
1691481019.5727274-UTR-H-paniculata_contig2689:16103..164281691481019.5727274-UTR-H-paniculata_contig2689:16103..16428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2689 16104..16428 +
1622929807.1072638-UTR-H-paniculata_contig2689:16926..169321622929807.1072638-UTR-H-paniculata_contig2689:16926..16932Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2689 16927..16932 +
1691481019.583651-UTR-H-paniculata_contig2689:16926..169321691481019.583651-UTR-H-paniculata_contig2689:16926..16932Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2689 16927..16932 +
1622929807.1753259-UTR-H-paniculata_contig2689:19219..196711622929807.1753259-UTR-H-paniculata_contig2689:19219..19671Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2689 19220..19671 +
1691481019.6233428-UTR-H-paniculata_contig2689:19219..196711691481019.6233428-UTR-H-paniculata_contig2689:19219..19671Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2689 19220..19671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.1247602-CDS-H-paniculata_contig2689:16932..170731622929807.1247602-CDS-H-paniculata_contig2689:16932..17073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2689 16933..17073 +
1691481019.5949445-CDS-H-paniculata_contig2689:16932..170731691481019.5949445-CDS-H-paniculata_contig2689:16932..17073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2689 16933..17073 +
1622929807.1431804-CDS-H-paniculata_contig2689:18290..184721622929807.1431804-CDS-H-paniculata_contig2689:18290..18472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2689 18291..18472 +
1691481019.606938-CDS-H-paniculata_contig2689:18290..184721691481019.606938-CDS-H-paniculata_contig2689:18290..18472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2689 18291..18472 +
1622929807.1607516-CDS-H-paniculata_contig2689:19080..192191622929807.1607516-CDS-H-paniculata_contig2689:19080..19219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2689 19081..19219 +
1691481019.6154602-CDS-H-paniculata_contig2689:19080..192191691481019.6154602-CDS-H-paniculata_contig2689:19080..19219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2689 19081..19219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2689.7354.1

>prot_H-paniculata_contig2689.7354.1 ID=prot_H-paniculata_contig2689.7354.1|Name=mRNA_H-paniculata_contig2689.7354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
MAVNLAHGELRRRMVTGEHVKRMEAAMGKEDAELMLGSGITGVTPGKVGD
AKCLHAHVADALMRGRESNAIGRVTLELLEDEGLHTSGCTECCQQCDVRI
EETDITWRYTPQKNKQRLQQRKSRRKVLKAYIDAKAEDASQADCDANVPL
RPE*
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mRNA from alignment at H-paniculata_contig2689:12200..19671+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2689.7354.1 ID=mRNA_H-paniculata_contig2689.7354.1|Name=mRNA_H-paniculata_contig2689.7354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7472bp|location=Sequence derived from alignment at H-paniculata_contig2689:12200..19671+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTGCTCTAGCTTTTCCGCCGGTGAAGTTGATGTGAGTAACGTCCTGAA
ACATGACTTTTCATTCGCCGCTGCGTTGCTTTTGCACCCGGACTTGGCCC
TGGCAACCGACCAAGGGTCAACCACCATACCTGAAGCAGTGATACGTCTT
CTGCTTACTGCCACTATTTTTACTGCACTTGATTCCGCAGTTGCCCGCCC
CAAACTGCTCTGGCGAAGAGATTTCGTGTCATGAAATGTCTGGCCTTTCC
ATAGGTGTATCTGAGAGCTGCTGCTGTCTGCGGAAGCCATGTGGACGACT
ACAGCTAAGAGGCTTCGACACTTTTCGCGAGTGCTGTCGTGGGTTGTTGT
CACACAGTGTGGTGACGCTGTGTGCTGTGGTGGTGTAGTTGTTGTTATGA
GGCTATAGATTGGGAGATCGTGTGGCTCTGTGTCCTATTATGGTCGTTAG
AGGATGGGGCGGTGTCACTTTGTGTGGGTCACTCGTCGGTATGTGGTTGG
GTTTTCGGGGAAGAGGCGATCCACTTCATCTGTTTAGTGTTTTTGTGGAT
CGGGCTGGTCTGTTCAAATAGCCTACTGAAGAGGAACATATTATGCGCAA
AAACGGGTCAACGCTGAATAAAGTAGGCACAAAAAGGTGCTCAGGGTGAA
CTATGGCCAGGGAAGGTTGATGATGGGTGCTGGCCAACCAGAACAGTCCG
GCGTGGTTCTATTCTGCTGTTGTATTTGCCTACACCCGTTTTTGGCCAGA
ATCGCCAGGGTGCACCCGTTTTTGGCTATTGCCCTTTTTTTTCTCTCGAA
AACTTCCCTGCCATAAAAAGTGGTCTACGGATCATTCCCATTTTTCAGGC
GCTACAGACAGCGTAAACGCGTCGCCGAACCCGTACACAGGGCTTTGAAA
ATGCGGGATTCCTGATACCGTCCTCCTGTGATAGCTACAAAATACCCCAG
CCTTGCTAGATATGAACCTGACCCAGAACTGAATTCTAATACGAACGCTT
ACCCTAAACGTGAATCGTCGACCGTAGGGTGCTTCGGCGCGGCATACTTT
TGACGTATTTACGTTGGCAATACATCTGACCGAAGTCGTGGGCAGGAACG
GTTGTGTGTGCTGTGGCAGACGAGCATCTAACCTAGATTCGTCGATAGAA
GATTCAACCAAGCTGCGCTGGCAGATCACAACGTCCAGTGGACAAAAGTG
TAACAACAGATGCTAGGTCGCGGTAAAGGTAGTACCCGCAACAGTCAATC
GCGGACCTGAACGAAGAGCTTCCTGAATTTCATGCACAATCATTTTTTTA
CAATACCTGGTGCGACCCGGTCCCAATTGGACCGACCTACCAATCTCCCC
GTGCCACTATAATGCTGCAATATTTATGTGCCTCGTGTGCCTGGGTGTTT
GGGCAGCGCGCTGTTTTGTCCCCTGAGCATTTGCTGCATGTCTTGCGAAC
ATGGGTCAAACAGCAGCGTTACGATATCCTCGGATTTGTTTACTTGGCAC
AACATGCGGAAATTTTGCACACGGAGAAATTTACAGCTTTGTAGGGATAT
CGACCGTGCCTGTTAGTATGGCATGTGTCACAGCGCCGCGCCAAAACCAA
AGTGAGAGGTCTTGGGACTGTCAGCTCCACCACAGTAAGATGAACTCTTA
CAGAAACCCTAATTTGTTTTTTGTCCATGACCGGGGTTAAATCTACTTCT
GTTTCAGGTTCCGCTCTAAAGAGACAAGCACGACCGGTTCGCACTACTCT
TGATTATGGTCGGTGTTAGATACGACAAAATTGGCATCTAGGGGAAGGAA
AACTTCTGCCCGCGTCCCACACATGGGCTACAGTTCTCGGTCGGCGTGAC
TACGCTCTGGCATATCTATCCGATTTGTGGTCCTTGAGTAACTTTTGTTC
ACATTTTCCCTTAGGAAAGAGACAGACCCGTGGTCAGTGCCCACTATATT
TCAGTAGTTGCTCCGTACGATGCCTCCCTTTAGATGCATTAGGGCACGGG
CTATAGGGTTGAAAATCTGGCGGCTGGCTCCGCTTCTCTGTATCGTTTGT
GTGCGCGTGTGCTCCTGCGTGGGAAGCTGCACACCCCTCAGGCGTGAGCA
TCCTTTGTACGATATTTTTGTATTCTTCTTGCTAAGCGCATCGTTTTTCT
GCACCCAACACATCAGCATGTGTCATCCTATGCACAGTACGTACTCTTTG
TTCAACCCCGCGCTGCACCATTCCTTTTGGTGTCTGCTGGATTTTGCGTA
AATGATCATGTGGGAGACTGTGGATATTGCACATTCTTGCAACAGATCGG
AATGATATTAGCACGAAAAGCACGGAAGTAGAGTACCCTTAGAGGCGGTA
AAGTAAATGGAATTAGGAATTAAGCCGATTCGGAAAAAAAAAATTCCACG
GTTTGAAGTGGCGTCACGCGACGCTGACTTCGAATTAATTTACTTGACAT
TAGTATCGTTTTTGGATGTGCGTTAATCGTTTGACAACCAACGATTCATA
CCATGAGATCGTACAGCAAACTCGTACAATCAAGGGTATGGACCAGAATT
TTTTGTGCTTTGAGAAAACGTCTCGCAAAGTTCATGTTACGCCGCTTTTT
CAGGGTAATCCGGCTGGATCCCGTCGGACGCAAGATACCCTACTCAGTTG
GAGTTTGCGGAGCCTGATTAGGCGCTTTTCTTTTCTTGATATAGATTGTT
GGAAGAGGGTCATGCAGTTCATATTTGCATATCGCTGGCAGTTTATTTGT
TGGGCTTGCACTGTCACGCGCAAATCAAGTAACTTCTCGCTGAGTACTTG
CCACGGCCTACCCCATGATAATGTCTTGCATATGGACGTGGCAATAGTAA
GTCAGCAGTATCCTCTCCCCCTCTGTGTCGTCCCTAGTGATGGTATTGCG
GCGATAGCTCGTTACCAAGATTGCGCGCTATTCGTGACTAAAACCGTATT
TGTGTGTTTGCCGCTACATCTGCACTGTCTATGCATGCATCCAGATCCGC
TCAAGCTCGAACGCGGCGTTTCTATTCCCGGCTTGGACACCCACGACCGT
CCACCCTTCGTCTGCATCCAGGTCGTACAAGCCCATAAATAGATGCAGCA
GTGATTCGTTCGATCGTTTATTCCTCCACCGGAAGACACGAGGCAGGTCA
GCCGTGTTTTCGGCGCTCAGACGGTTTAGCAACCACGACAGCAACTTCGA
GGTGACCGAGGGAGCAGTGCACGAGCGGCAAGGGTTCCGGGCTCGGCAGC
GGCGGAAGCGCAGGCAGAGAGGAGGAGCGTGGACATGGACACGCGAAGAC
AGTGATGCCTTTCCGAGCTTGTGTGAGAGCAAGAGAGCGAGCTCTCGTCC
GGTCAGGTAATGACTGATGCATGACTATTGACGTACATTCCTGAAGTGGC
ACATGCTGGAGAGGCAGGGCTAGCTTTTTCCTTGAGAGTTGATGAGAGTG
GAGGTACAGTAGGAGACAAGTGACGAAGCATGGCTCCAATATTAGGGGGT
ATAGGAGCAAGCACTGGAAAGCCGAGGCACGCATCATTAGCCTCCATCAA
CTAGGTAAAGTCCTCAAAGCCTCCGTGAATGGAGGTCAGGGCAGGAGGGA
TCCGCGAGCCTATATATGGGTCGAGGTCTTCCTCGTCGAAAGCGCGTTCG
AAGGTGACACACTTCGAGTCTCATTTTTCCATCCTTCTCCACCTACCTCT
GTCTCCTCACCTAAGTTGCTGCGGGTTACACACAAAACATGAACCCTTTT
TATCGATCCACACGTGCCAGTCGAAAGCGTGATGACAAAAACTCACGATG
AAAAAGCATGCACCTTCTCTTATCTGCGCTTTTTTTGTCTCCCGAACACG
TAGTCCTTCAGAAGACTGACCCAAAACGGCAACATTAAACGTTCCGAAAA
GCAGGACCGACGAGCTGACTCCACAGGCGCAAGCGCGGGCGAAGACCCTG
GCGGCCGAGTTAGTACTGACGCCGCCCACAGCGAAGGACCTCGTCTGCAT
TGAGGAGCGGCAACTGCGACATAAGGCCGGGGATACGGTGGCCGTGTCTC
CTCCCTGCCGGCATGGGTTTCCCCAGGCGTTCGCGTTTCACCCCGTGGGA
TACAAGATCTCGTCGGGCTTGTTTCGCCTCTCTTGCCCTTTGTTGGTGAA
GGCTATCGATAAACTGGAGGAGGATGGGGGGCTGGAGGATGTGAACGATC
AGCTGGAAGTAGATGTGGATTTGAGACAGGTGCAATTTGGGTCTGTTCTG
TGTAACGGGTTGGGAAGGGGACAGGGAAGGCTAGCATTGGGCCCTGACCT
ACCATGTGTCAGGCTCGGGGGTGAAAACATAACGATAATGCCCTGCACTC
GTTTTGTCCAATTCTACCTGCAGCAGTGCTGAAGGGGTTGTCATAGATTT
TGTTGAAAATCGAGCGAGTCGGGATTTGTGCCTCCTAGTTGTTTTGGTAA
TGTCAGCATACCCACGACTGTTGCTCAATATGTTTTTGTTCTACAGTTGA
TAACCCGTACAAGGAAGTACTCTCACAGCCCCTGCATTAGTGTGGTGCGT
CCATGCCTTTATTTTTGTATGTTGCAATCGCTGTAAAGCCTACCGTCTGG
AGCCACAATCAAATCTCCTGTGCACGCCATCCATTGAGCGGTATATTTAT
CGCAGCGTGTGCGTATGTCCTTCTCACACCTCCCCGTGATTTTTGTAACA
TGACGCCCGACGCCCGGCGTGGCTCAGGATTTCATGGCGGTCAACTTGGC
TCACGGAGAGTTGCGACGGCGAATGGTGACAGGAGAGCATGTAAAGAGAA
TGGAGGCGGCAATGGGCAAGGAGGATGCTGAGTTGATGCTTGGCAGTGGC
ATTACTGGCGTTACACCCGGCAAGGTATGGAAGCTGGTACCAGGAATAAG
CCTTTGATATGCGTTCCCTGGAACGGTTTTAAAGCTCAAGTATGGGAGTT
AGAAGCTGAGCGTTTGCACGCAACGTTAGACAGGGCGATAAAAGATGAAA
AACAAGAACACGTTGCCCTTCTGATATCGGTCGTCCTTCTCGCTAAATCC
CACAAGAATGATATTAGCATGCATTTTGAAAGTCCTCCTCGAGGGCCCTT
TGTTCCGATTACTTCGTTCCATGCAATCGATATCAATAACGGCGTTTTAT
TTTTTCGCAATGGCAGTTTTCAAGTCTGTTCAAGTTCTTTAGCCTGTCTG
TTGAAAACAGTTGTGAATTAAGTTTGTTGATCCGGAAAACCTCCTTCAGC
TCATGGCAACATTTTACTTGGGGGCAGGCCGACAGGGTGCGGGGTCAGCT
GTGCCTGTGGTTACCGGTACCTGAGCTGTTTTGTCTTTGCACGCAGTGTA
ATTTCGCTTCATGTACTCACTTCGAGAGTCAAATTTACTGTCCTGTTCAC
CAATCCATATTAAAGCACTGCATCACATTATATCCCACAGTTAGTAACAA
AAGGAAGGTACCAAGTGACATATGAAGGGTTTGATGATCAGCCGAAAAAT
GTAATGCGATTTTTTTTGTACGATATTGCACGGATCAGACGTCAACGTTT
CAAGTAATTGCACGTCTTGGCTATGCTGAGCCTGTATATATATGTTGCGC
CATGGAGATTGTACCTCTGAGATATAGTTTCAGCACATGGCACTTTACTC
TTCAGCGTCCATCTTTCCTTTTGAAATCTTGTGGAGGACGTGTTGTGCGT
ACTTGAAGCTTCATTCTCTGTACACGCACGCGTGCTATACCCAGTATAAT
TTGTACAAGCTTCCTCTGCACATTTACTTGAGATATGGGCCATGGGCACT
GCCAACCCTAACTCCGCTATCATCACTTTTCCCTAACTTGCCGCGCATTT
TGTAATATTATCGTGCCCTACCGCGTGAGGCGAAGTCCAGTCACTTGAAA
TCAAGCCATCCCTACTGTCGGCACTCCTTTGGTATCAAACTATCTTGCAT
TTAGGCATTTTTGTAATGGGTGAGAGGCAGCGATGTGAACCCCGTTGTTC
GCATGCATCATATCGTAGCCGGCACTGTACATCAGCTGTGTTTCATCCCC
TCCCTAATGTTCGCCGTCACTTTCTGGCGCGCGACTGAAAGGTTGGGGAC
GCGAAGTGTCTGCACGCGCATGTGGCCGATGCCCTCATGCGAGGTCGAGA
ATCAAATGCAATCGGGCGAGTGACTCTCGAGTTGCTGGAGGATGAAGGCT
TGCACACTTCCGGGTGCACGGAGTGCTGTCAGCAGTGCGACGTGCGTATA
GAGGAGACGGACATAACGTGGAGGTGAGGAAAGCTCTAATGTGTACTGTG
CTGATGAACGCTTTTTTATTGTTTCCGGGCGGCGTGAACTGTTTTCGATG
GTATTGTGATTGATCGGGTTTACTTCGTTACCTTCCCGCAGTATCACAGT
GAAGAAAGAGGAAATGAGGGTTCTGCCTATGGGTTTTAAGCTTTTTATTT
TTGTTGCGTGTCTCCTCTTGATATTGTCGAGAAAAACTTGGTACAACAGT
TTGTTTACATTTTCGATCAATTGACAACACCTGACCTCAGTTGATCATCG
GGATAATATGTCCGCGAAATTCTACTGCGTCTGCTTAATAAGGCATTGGT
TGCTTCACTCCGACGCCAGTGCAATGTCTGATCGATGGATCAGAAAAAAA
AGGCTGTCCAAGGTACATACGTGCTCCTCGGCTGGAGCATGTGAGAATCT
CGCGTGCTGTGGGCATCCATTTATCTTGCACATTGCAATGGTGACTGTGA
ACCCCACCGTTACAACGTGCTCGCCTGACGGCGTGAATGTATCGCATTTT
GATGTCCTTTCCATTCTAATATGCTTTCATGACCGTGGCGTTTTTTTGCT
CTCTCAAATTTGCGTGAACGCTCAAAATAAGGTACACGCCACAGAAGAAC
AAGCAGCGACTTCAACAGAGAAAGTCGCGACGGAAAGTGCTCAAAGCTTA
CATCGATGCGAAGGCCGAGGACGCAAGCCAAGCAGATTGCGATGCAAATG
TTCCACTTCGTCCTGAGTAGCTTCTTTATTTTAATACACAGCGCTCAGCA
GAGATGGGACAGTCCGCTGGGCCAGCAGGGATGGTGTTTTTTTAAGGCCA
GTGAATTAGCCCTATGATCTAAACATCAACATTTCAACTCTACGTTAACC
CTTCAAGCACCATGCCAAACTATTCCGAAAATGTGGAGTTGTAGAGTTGG
CAGTCCAGTGCCCTTGGGGGGTGTCATACGAAAGGAGGAGCAGGGGGTTT
GCGCTGAATTGGTAAGATTTGCAAACGACCAGTACAATATGCGTAGACGG
ACGACAAGAGAACCATCGTGGCGGTAAATGTGTTTTTCTCGTTATTATTT
TTCGCCAAACGACAAGAACGGCCAACCAATAAGCGTTGCTCATCATCATC
GTAACGTGGGCTTACATGCTCTGATGAAGGGCATGGAGTGATCGGGTCCA
TGAAGGTTCCGTGTACTATTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig2689:12200..19671+

>mRNA_H-paniculata_contig2689.7354.1 ID=mRNA_H-paniculata_contig2689.7354.1|Name=mRNA_H-paniculata_contig2689.7354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig2689:12200..19671+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGTCAACTTGGCTCACGGAGAGTTGCGACGGCGAATGGTGACAGG
AGAGCATGTAAAGAGAATGGAGGCGGCAATGGGCAAGGAGGATGCTGAGT
TGATGCTTGGCAGTGGCATTACTGGCGTTACACCCGGCAAGATGGCGGTC
AACTTGGCTCACGGAGAGTTGCGACGGCGAATGGTGACAGGAGAGCATGT
AAAGAGAATGGAGGCGGCAATGGGCAAGGAGGATGCTGAGTTGATGCTTG
GCAGTGGCATTACTGGCGTTACACCCGGCAAGGTTGGGGACGCGAAGTGT
CTGCACGCGCATGTGGCCGATGCCCTCATGCGAGGTCGAGAATCAAATGC
AATCGGGCGAGTGACTCTCGAGTTGCTGGAGGATGAAGGCTTGCACACTT
CCGGGTGCACGGAGTGCTGTCAGCAGTGCGACGTGCGTATAGAGGAGACG
GACATAACGTGGAGGTTGGGGACGCGAAGTGTCTGCACGCGCATGTGGCC
GATGCCCTCATGCGAGGTCGAGAATCAAATGCAATCGGGCGAGTGACTCT
CGAGTTGCTGGAGGATGAAGGCTTGCACACTTCCGGGTGCACGGAGTGCT
GTCAGCAGTGCGACGTGCGTATAGAGGAGACGGACATAACGTGGAGGTAC
ACGCCACAGAAGAACAAGCAGCGACTTCAACAGAGAAAGTCGCGACGGAA
AGTGCTCAAAGCTTACATCGATGCGAAGGCCGAGGACGCAAGCCAAGCAG
ATTGCGATGCAAATGTTCCACTTCGTCCTGAGTAGGTACACGCCACAGAA
GAACAAGCAGCGACTTCAACAGAGAAAGTCGCGACGGAAAGTGCTCAAAG
CTTACATCGATGCGAAGGCCGAGGACGCAAGCCAAGCAGATTGCGATGCA
AATGTTCCACTTCGTCCTGAGTAG
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