mRNA_H-paniculata_contig26888.7353.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26888.7353.1
Unique NamemRNA_H-paniculata_contig26888.7353.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26888.7353.1 vs. uniprot
Match: A0A2N3T4I5_9FLAO (Putative secreted protein (Por secretion system target) n=1 Tax=Aquimarina sp. MAR_2010_214 TaxID=1250026 RepID=A0A2N3T4I5_9FLAO)

HSP 1 Score: 62.0 bits (149), Expect = 2.700e-9
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:  103 ALRALYWATGGPEWVNSWDLEADIDTWCGVEMDEEGDCVVSLSLENNNLRG 255
            AL ALY AT GP WVN WDL AD+ TW GV +D+  + V ++SL NNNL G
Sbjct:  462 ALIALYNATNGPNWVNPWDLTADVSTWHGVFLDDSKN-VQAISLTNNNLTG 511
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BLAST of mRNA_H-paniculata_contig26888.7353.1 vs. uniprot
Match: A0A2K1E1B7_9FLAO (Two component regulator three Y domain protein n=1 Tax=Hanstruepera neustonica TaxID=1445657 RepID=A0A2K1E1B7_9FLAO)

HSP 1 Score: 61.2 bits (147), Expect = 3.280e-9
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:  103 ALRALYWATGGPEWVNSWDLEADIDTWCGVEMDEEGDCVVSLSLENNNLRG 255
            AL ALY +T G EWVN+WDL A I+TW GV    E D VV+L+LE NNL+G
Sbjct:   28 ALIALYNSTNGDEWVNTWDLNASINTWYGVTT--ENDQVVALNLEFNNLQG 76
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BLAST of mRNA_H-paniculata_contig26888.7353.1 vs. uniprot
Match: A0A2D0N725_9BACT (Uncharacterized protein n=1 Tax=Flavilitoribacter nigricans DSM 23189 = NBRC 102662 TaxID=1122177 RepID=A0A2D0N725_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 1.790e-8
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:  103 ALRALYWATGGPEWVNSWDLEADIDTWCGVEMDEEGDCVVSLSLENNNLRG 255
            +L   Y   GGP W N+WDL+A +D+W GV MDE+  CV +L+L  N ++G
Sbjct: 1749 SLVLFYQIMGGPGWDNTWDLQAPLDSWYGVSMDEQLGCVTALNLSGNGVKG 1799
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BLAST of mRNA_H-paniculata_contig26888.7353.1 vs. uniprot
Match: UPI001F55DA33 (Two component regulator three Y domain protein n=1 Tax=Aestuariivivens sp. AH-MY3 TaxID=2913554 RepID=UPI001F55DA33)

HSP 1 Score: 58.9 bits (141), Expect = 2.390e-8
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  103 ALRALYWATGGPEWVNSWDLEADIDTWCGVEMDEEGDCVVSLSLENNNLRG 255
            AL ALY A  G EW  SWDLEA IDTW GV++ +  D VV L+L  NNL+G
Sbjct:   28 ALIALYKAANGSEWSTSWDLEASIDTWYGVKVQD--DKVVELNLHFNNLQG 76
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BLAST of mRNA_H-paniculata_contig26888.7353.1 vs. uniprot
Match: UPI000CF13B4C (Two component regulator three Y domain protein n=2 Tax=Hanstruepera ponticola TaxID=2042995 RepID=UPI000CF13B4C)

HSP 1 Score: 58.5 bits (140), Expect = 3.170e-8
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:  103 ALRALYWATGGPEWVNSWDLEADIDTWCGVEMDEEGDCVVSLSLENNNLRG 255
            AL ALY AT G +WVN+WDL   I+TW GV ++E    VV+L+LE NNL+G
Sbjct:   28 ALLALYNATKGDQWVNTWDLSTPINTWYGVTVEENQ--VVALNLEFNNLQG 76
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BLAST of mRNA_H-paniculata_contig26888.7353.1 vs. uniprot
Match: A0A1M6QIN6_9BACT (Kelch motif-containing protein n=4 Tax=Reichenbachiella TaxID=156993 RepID=A0A1M6QIN6_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 4.590e-8
Identity = 38/82 (46.34%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:   28 QVYLRKDVGTMDLPQN---MESKSEAVS---ALRALYWATGGPEWVNSWDLEADIDTWCGVEMDEEGDCVVSLSLENNNLRG 255
            QV++     T+   QN   ME    A S   AL ALY AT G  W N WDL A++ TW GV +DE G  V SL+L  NNL G
Sbjct:  938 QVHVYNQSLTLSEIQNVFVMEGDETAASDRDALMALYNATDGANWTNVWDLNAEMSTWYGVGLDENGR-VDSLNLAENNLTG 1018
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BLAST of mRNA_H-paniculata_contig26888.7353.1 vs. uniprot
Match: A0A2U2X9J1_9FLAO (Two component regulator three Y domain protein n=1 Tax=Algibacter marinivivus TaxID=2100723 RepID=A0A2U2X9J1_9FLAO)

HSP 1 Score: 57.0 bits (136), Expect = 1.170e-7
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  103 ALRALYWATGGPEWVNSWDLEADIDTWCGVEMDEEGDCVVSLSLENNNLRG 255
            AL ALY AT G EW +SWDL A +D W GV++  E D VV ++L+ NNL G
Sbjct:   28 ALIALYNATNGAEWNSSWDLNASVDKWYGVKI--ENDKVVEINLQFNNLNG 76
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BLAST of mRNA_H-paniculata_contig26888.7353.1 vs. uniprot
Match: UPI0006B5F586 (Two component regulator three Y domain protein n=3 Tax=Mangrovimonas TaxID=1211036 RepID=UPI0006B5F586)

HSP 1 Score: 56.2 bits (134), Expect = 2.230e-7
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  100 SALRALYWATGGPEWVNSWDLEADIDTWCGVEMDEEGDCVVSLSLENNNLRG 255
            SAL ALY +T G EW   W+L+ D+++W GV++  E + VV +SLE NNL+G
Sbjct:   27 SALLALYESTNGNEWTTKWNLDQDVNSWFGVDV--ENNHVVGVSLEYNNLQG 76
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BLAST of mRNA_H-paniculata_contig26888.7353.1 vs. uniprot
Match: A0A0C5WKP1_9FLAO (Uncharacterized protein n=1 Tax=Siansivirga zeaxanthinifaciens CC-SAMT-1 TaxID=1454006 RepID=A0A0C5WKP1_9FLAO)

HSP 1 Score: 56.2 bits (134), Expect = 2.260e-7
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:  103 ALRALYWATGGPEWVNSWDLEADIDTWCGVEMDEEGDCVVSLSLENNNLRG 255
            AL ALY +T G +W  +WDL A IDTW GV++  E + VV +SLE NNL+G
Sbjct:   28 ALIALYNSTNGNQWNTTWDLNASIDTWYGVKV--ENNQVVEISLEFNNLQG 76
[Close]
BLAST of mRNA_H-paniculata_contig26888.7353.1 vs. uniprot
Match: UPI0016683F1C (hypothetical protein n=1 Tax=Muriicola marianensis TaxID=1324801 RepID=UPI0016683F1C)

HSP 1 Score: 56.2 bits (134), Expect = 2.460e-7
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:  100 SALRALYWATGGPEWVNSWDLEADIDTWCGVEMDEEGDCVVSLSLENNNLRG 255
            SAL  LY +T G EWV +WDL A + TW GVE+ +  D VV+++L  NNL+G
Sbjct:   28 SALEDLYESTNGKEWVRTWDLNAPVKTWYGVEVVD--DHVVAINLFRNNLKG 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26888.7353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N3T4I5_9FLAO2.700e-958.82Putative secreted protein (Por secretion system ta... [more]
A0A2K1E1B7_9FLAO3.280e-960.78Two component regulator three Y domain protein n=1... [more]
A0A2D0N725_9BACT1.790e-847.06Uncharacterized protein n=1 Tax=Flavilitoribacter ... [more]
UPI001F55DA332.390e-858.82Two component regulator three Y domain protein n=1... [more]
UPI000CF13B4C3.170e-856.86Two component regulator three Y domain protein n=2... [more]
A0A1M6QIN6_9BACT4.590e-846.34Kelch motif-containing protein n=4 Tax=Reichenbach... [more]
A0A2U2X9J1_9FLAO1.170e-754.90Two component regulator three Y domain protein n=1... [more]
UPI0006B5F5862.230e-750.00Two component regulator three Y domain protein n=3... [more]
A0A0C5WKP1_9FLAO2.260e-754.90Uncharacterized protein n=1 Tax=Siansivirga zeaxan... [more]
UPI0016683F1C2.460e-751.92hypothetical protein n=1 Tax=Muriicola marianensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26888contigH-paniculata_contig26888:1642..2826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size257
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929806.9635565-CDS-H-paniculata_contig26888:1641..18441622929806.9635565-CDS-H-paniculata_contig26888:1641..1844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26888 1642..1844 -
1691481019.518637-CDS-H-paniculata_contig26888:1641..18441691481019.518637-CDS-H-paniculata_contig26888:1641..1844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26888 1642..1844 -
1622929806.990253-CDS-H-paniculata_contig26888:2774..28261622929806.990253-CDS-H-paniculata_contig26888:2774..2826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26888 2775..2826 -
1691481019.5315075-CDS-H-paniculata_contig26888:2774..28261691481019.5315075-CDS-H-paniculata_contig26888:2774..2826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26888 2775..2826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26888.7353.1prot_H-paniculata_contig26888.7353.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26888 1642..2826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26888.7353.1

>prot_H-paniculata_contig26888.7353.1 ID=prot_H-paniculata_contig26888.7353.1|Name=mRNA_H-paniculata_contig26888.7353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
AHNTTQLSVQVYLRKDVGTMDLPQNMESKSEAVSALRALYWATGGPEWVN
SWDLEADIDTWCGVEMDEEGDCVVSLSLENNNLRG
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mRNA from alignment at H-paniculata_contig26888:1642..2826-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26888.7353.1 ID=mRNA_H-paniculata_contig26888.7353.1|Name=mRNA_H-paniculata_contig26888.7353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1185bp|location=Sequence derived from alignment at H-paniculata_contig26888:1642..2826- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCACAACACAACGCAGTTATCAGTACAGGTGTACTTAAGGAAAGATGT
AGGTGAGACCAGATGCTTGTCTACTGTGAGGTGCCAGTGTTAATACAAGT
AAGGTGGATCTGTGTTCTTGTTATATTTGTCTCAGGCGCAAATCTTGCAT
CGCGTACGCCCGAAACAATCTAGCGTCTCTTTGTGAGAGTAACAGAGAAA
ATGTCCTGATACCTCGGTCGCGAAAGTCAATTCAATAATATAGCATACGG
TTATGTCCTCCCTGCCAGTGCTTAGCTTGTATGACGCTAGGAAAATTACT
ATGGTATCCATTCTGCTTTGCTCCGTTTCACGCTCATTTCTTAGACTCTT
TTGCTGTGTGTGTGCCTGTTCATCCGGCGCGGCATAAGTATAGGGCCGTT
CCAAACGAGGCCGCCTTTCGTCCGATTTTTTCCGTTTTTTAGTTTCTCGA
AAATTAGGGAATCAACGATAGCGAGCTGAACAAGTGGATGCCTAACTAGA
GTTCACCAGACGCATAAAGACAACATGATACACGATATTCTATCAAATTC
GAGCTCGTTATCGTGGTTTTCAGTATTTGGAAAAACAAGAAAACGGAAAA
CTGTTGGCCTCGTTCAGAACAGTTCCGCAGAAATTCAGTACTGTGGTTCA
GAGTAACAAAACCTTGAACCTGGTTGCGGAGTGGAGTTTCTTGCCTAATG
AGTTCTTGGGAGCAATAGCTAGTGCGCGTCGTGGTCCAGGCGCGGTGGCC
GGTTTGACAGTAACATGCAGTTATACTCTCTCCGTCAGTGCTCGATTTGT
GTAACCTCGTGGTGATGTCGTTGCATCCATTCTGCTGTTGTATATACCGA
TCACGCTTGAGGCTTCTCGGTTTCATGCTTGTGTGTGTTCATGTTTCTCT
GGTGCAGTCTTCTGCCCTAATTTTCCGTGATTAAATCAGCTAGTAGGTAA
CATTTCTAAATTTTCCGAACATACAAAACTAGGCACGATGGATCTTCCCC
AAAACATGGAGTCCAAGAGTGAGGCTGTGTCTGCACTGCGTGCCCTATAC
TGGGCAACCGGAGGGCCAGAGTGGGTGAACTCTTGGGATTTGGAAGCCGA
CATAGACACATGGTGTGGAGTGGAGATGGACGAAGAGGGAGACTGTGTGG
TGTCGCTTTCTCTCGAGAACAACAACCTCCGAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig26888:1642..2826-

>mRNA_H-paniculata_contig26888.7353.1 ID=mRNA_H-paniculata_contig26888.7353.1|Name=mRNA_H-paniculata_contig26888.7353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig26888:1642..2826- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCACAACACAACGCAGTTATCAGTACAGGTGTACTTAAGGAAAGATGT
AGGCGCACAACACAACGCAGTTATCAGTACAGGTGTACTTAAGGAAAGAT
GTAGGCACGATGGATCTTCCCCAAAACATGGAGTCCAAGAGTGAGGCTGT
GTCTGCACTGCGTGCCCTATACTGGGCAACCGGAGGGCCAGAGTGGGTGA
ACTCTTGGGATTTGGAAGCCGACATAGACACATGGTGTGGAGTGGAGATG
GACGAAGAGGGAGACTGTGTGGTGTCGCTTTCTCTCGAGAACAACAACCT
CCGAGGTGCACGATGGATCTTCCCCAAAACATGGAGTCCAAGAGTGAGGC
TGTGTCTGCACTGCGTGCCCTATACTGGGCAACCGGAGGGCCAGAGTGGG
TGAACTCTTGGGATTTGGAAGCCGACATAGACACATGGTGTGGAGTGGAG
ATGGACGAAGAGGGAGACTGTGTGGTGTCGCTTTCTCTCGAGAACAACAA
CCTCCGAGGT
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