prot_H-paniculata_contig2687.7349.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig2687.7349.1
Unique Name	prot_H-paniculata_contig2687.7349.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	108

Homology

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BLAST of mRNA_H-paniculata_contig2687.7349.1 vs. uniprot
Match: A0A6H5JWV5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWV5_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.020e-55
Identity = 83/105 (79.05%), Postives = 96/105 (91.43%), Query Frame = 0

Query:    1 MTGITFGAMDGHKALREDKLGKFPTTALKTKEFMRLTALSGTIFTGFFCAFQGIKYGAKLARNEDDFFNVLIASAGAVAPLVPFPAARARFPYAVILIAMDTLNN 105
            +TGITFGAMDGH+A+R+D +GKFPTTALKTKEF RLTALSGTIFTGFFC +QG+KYGAKLAR EDDF+NVLIASAG+ AP++  PA R+R+PYA ILIAMDTLNN
Sbjct:   62 VTGITFGAMDGHRAIRDDSMGKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKLARKEDDFWNVLIASAGSFAPMLVVPAMRSRYPYAAILIAMDTLNN 166

[Close]

BLAST of mRNA_H-paniculata_contig2687.7349.1 vs. uniprot
Match: A0A835YQU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQU0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.050e-33
Identity = 58/105 (55.24%), Postives = 76/105 (72.38%), Query Frame = 0

Query:    1 MTGITFGAMDGHKALREDKLGKFPTTALKTKEFMRLTALSGTIFTGFFCAFQGIKYGAKLARNEDDFFNVLIASAGAVAPLVPFPAARARFPYAVILIAMDTLNN 105
            +TGI FG MD H+ +   K G+F T A K KE  R+TA +GT+F G+F A+QGIKYG +  R ED FFNV +A+A ++AP+VPFPA RAR PY   L+A+DTLN+
Sbjct:   63 VTGIMFGLMDSHRVI--SKTGQFFTLAAKVKETTRMTAFTGTVFGGYFAAYQGIKYGIQAYRGEDTFFNVFMATAISIAPVVPFPALRARLPYMAFLVAIDTLNS 165

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig2687.7349.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig2687.7349.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JWV5_9PHAE	1.020e-55	79.05	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YQU0_9STRA	1.050e-33	55.24	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..35
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 36..55
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 67..87
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 56..66
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 88..107
None	No IPR available	TMHMM	TMhelix		coord: 32..54
None	No IPR available	TMHMM	TMhelix		coord: 67..89

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig2687	contig	H-paniculata_contig2687:14111..15382 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig2687.7349.1	mRNA_H-paniculata_contig2687.7349.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig2687 13401..15391 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig2687.7349.1 ID=prot_H-paniculata_contig2687.7349.1|Name=mRNA_H-paniculata_contig2687.7349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MTGITFGAMDGHKALREDKLGKFPTTALKTKEFMRLTALSGTIFTGFFCA
FQGIKYGAKLARNEDDFFNVLIASAGAVAPLVPFPAARARFPYAVILIAM
DTLNNML*