mRNA_H-paniculata_contig26858.7345.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26858.7345.1
Unique NamemRNA_H-paniculata_contig26858.7345.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26858.7345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26858contigH-paniculata_contig26858:1431..2018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size589
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929806.1384907-UTR-H-paniculata_contig26858:1430..16371622929806.1384907-UTR-H-paniculata_contig26858:1430..1637Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26858 1431..1637 +
1691481019.1533134-UTR-H-paniculata_contig26858:1430..16371691481019.1533134-UTR-H-paniculata_contig26858:1430..1637Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26858 1431..1637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929806.1542528-CDS-H-paniculata_contig26858:1637..20181622929806.1542528-CDS-H-paniculata_contig26858:1637..2018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26858 1638..2018 +
1691481019.1632178-CDS-H-paniculata_contig26858:1637..20181691481019.1632178-CDS-H-paniculata_contig26858:1637..2018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26858 1638..2018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26858.7345.1prot_H-paniculata_contig26858.7345.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26858 1638..2018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26858.7345.1

>prot_H-paniculata_contig26858.7345.1 ID=prot_H-paniculata_contig26858.7345.1|Name=mRNA_H-paniculata_contig26858.7345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MLMFHPPCPPGSLSFCGFLLSGVSFSTWGVASSCCATTSSPSNYSIFSSN
AGRQESLYFLVPLSVNGHVELVMLPPFTPGQILLSLLDDANTPASNLAVE
IAGRIWTRNGADEHHLRKLTLVLYFGG
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mRNA from alignment at H-paniculata_contig26858:1431..2018+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26858.7345.1 ID=mRNA_H-paniculata_contig26858.7345.1|Name=mRNA_H-paniculata_contig26858.7345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=588bp|location=Sequence derived from alignment at H-paniculata_contig26858:1431..2018+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTAAATGTCACCCAATGAACAGTTACCTCCTAGCGTCTTCAAGACCTG
ATTGTACCGCTCAAAGAGGCTCTGCCACACCCTCTCGAAGGTTCCCGCGT
CGTAGGCATCATACATGATCTTCACCCTCTTCAGAATGCGGGGTATAGTA
CCGTAACGCTCCCTCCAAGCCCTAATTTTCAGAGATGCCAAGAACCCCAA
ATTTTTTATGTTGATGTTCCACCCACCGTGCCCTCCGGGTTCATTGAGCT
TCTGCGGCTTTCTCTTGAGCGGCGTGTCGTTCTCCACGTGGGGGGTCGCT
TCATCCTGCTGCGCGACCACTTCCTCACCCTCGAACTACAGCATATTTTC
CTCCAATGCTGGGAGACAAGAGTCCTTGTACTTCTTGGTACCACTTAGTG
TCAATGGTCATGTCGAACTCGTTATGCTTCCCCCGTTTACGCCAGGTCAA
ATTCTTCTGAGCCTGCTTGATGACGCAAACACGCCAGCTTCCAATCTTGC
TGTCGAAATCGCGGGAAGGATCTGGACGCGAAACGGTGCAGATGAACATC
ACCTTAGGAAGCTGACCCTTGTGCTATACTTTGGTGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig26858:1431..2018+

>mRNA_H-paniculata_contig26858.7345.1 ID=mRNA_H-paniculata_contig26858.7345.1|Name=mRNA_H-paniculata_contig26858.7345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig26858:1431..2018+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGATGTTCCACCCACCGTGCCCTCCGGGTTCATTGAGCTTCTGCGG
CTTTCTCTTGAGCGGCGTGTCGTTCTCCACGTGGGGGGTCGCTTCATCCT
GCTGCGCGACCACTTCCTCACCCTCGAACTACAGCATATTTTCCTCCAAT
GCTGGGAGACAAGAGTCCTTGTACTTCTTGGTACCACTTAGTGTCAATGG
TCATGTCGAACTCGTTATGCTTCCCCCGTTTACGCCAGGTCAAATTCTTC
TGAGCCTGCTTGATGACGCAAACACGCCAGCTTCCAATCTTGCTGTCGAA
ATCGCGGGAAGGATCTGGACGCGAAACGGTGCAGATGAACATCACCTTAG
GAAGCTGACCCTTGTGCTATACTTTGGTGGAATGTTGATGTTCCACCCAC
CGTGCCCTCCGGGTTCATTGAGCTTCTGCGGCTTTCTCTTGAGCGGCGTG
TCGTTCTCCACGTGGGGGGTCGCTTCATCCTGCTGCGCGACCACTTCCTC
ACCCTCGAACTACAGCATATTTTCCTCCAATGCTGGGAGACAAGAGTCCT
TGTACTTCTTGGTACCACTTAGTGTCAATGGTCATGTCGAACTCGTTATG
CTTCCCCCGTTTACGCCAGGTCAAATTCTTCTGAGCCTGCTTGATGACGC
AAACACGCCAGCTTCCAATCTTGCTGTCGAAATCGCGGGAAGGATCTGGA
CGCGAAACGGTGCAGATGAACATCACCTTAGGAAGCTGACCCTTGTGCTA
TACTTTGGTGGA
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