mRNA_H-paniculata_contig11149.735.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11149.735.1
Unique NamemRNA_H-paniculata_contig11149.735.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11149.735.1 vs. uniprot
Match: D7FMR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR0_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 2.910e-48
Identity = 98/137 (71.53%), Postives = 105/137 (76.64%), Query Frame = 1 
Query:    1 QVGTRVCVEKGHMATVASVKRSVRGNNLVDPYTEEEVDARYRLMLKPGESLNIITHNAVIDGEVKFAQGTVFQQPPNTKSQTLLGCLKSGIPLDDFVLGGERG---RRDSLAKREREKESSKKDGANTDERQSKRQA 402
            QVGTRVCVEKGH ATVASVKRS RG+N VDPYTEEEVDARYRLMLKPGE L+II  NAVIDG VKFA GTVFQQPPNTKSQTLLGC K+G+PL DFVLGG           AK+ERE E         D+RQ KR+A
Sbjct:   23 QVGTRVCVEKGHHATVASVKRSARGSNFVDPYTEEEVDARYRLMLKPGEPLHIIKTNAVIDGAVKFAPGTVFQQPPNTKSQTLLGCFKNGVPLHDFVLGGNNSGAXXXXXXAKKERELEM--------DDRQPKRRA 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11149.735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMR0_ECTSI2.910e-4871.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11149contigH-paniculata_contig11149:979..6538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1142
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11149.735.1prot_H-paniculata_contig11149.735.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11149 1272..6502 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928819.9072242-UTR-H-paniculata_contig11149:978..12711622928819.9072242-UTR-H-paniculata_contig11149:978..1271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11149 979..1271 -
1691480632.8245666-UTR-H-paniculata_contig11149:978..12711691480632.8245666-UTR-H-paniculata_contig11149:978..1271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11149 979..1271 -
1622928819.9868493-UTR-H-paniculata_contig11149:6502..65381622928819.9868493-UTR-H-paniculata_contig11149:6502..6538Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11149 6503..6538 -
1691480632.8764982-UTR-H-paniculata_contig11149:6502..65381691480632.8764982-UTR-H-paniculata_contig11149:6502..6538Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11149 6503..6538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928819.9239938-CDS-H-paniculata_contig11149:1271..14961622928819.9239938-CDS-H-paniculata_contig11149:1271..1496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11149 1272..1496 -
1691480632.8344798-CDS-H-paniculata_contig11149:1271..14961691480632.8344798-CDS-H-paniculata_contig11149:1271..1496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11149 1272..1496 -
1622928819.9448042-CDS-H-paniculata_contig11149:1928..21651622928819.9448042-CDS-H-paniculata_contig11149:1928..2165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11149 1929..2165 -
1691480632.842767-CDS-H-paniculata_contig11149:1928..21651691480632.842767-CDS-H-paniculata_contig11149:1928..2165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11149 1929..2165 -
1622928819.9638705-CDS-H-paniculata_contig11149:4636..48761622928819.9638705-CDS-H-paniculata_contig11149:4636..4876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11149 4637..4876 -
1691480632.8510308-CDS-H-paniculata_contig11149:4636..48761691480632.8510308-CDS-H-paniculata_contig11149:4636..4876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11149 4637..4876 -
1622928819.974422-CDS-H-paniculata_contig11149:6391..65021622928819.974422-CDS-H-paniculata_contig11149:6391..6502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11149 6392..6502 -
1691480632.862357-CDS-H-paniculata_contig11149:6391..65021691480632.862357-CDS-H-paniculata_contig11149:6391..6502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11149 6392..6502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11149.735.1

>prot_H-paniculata_contig11149.735.1 ID=prot_H-paniculata_contig11149.735.1|Name=mRNA_H-paniculata_contig11149.735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp
MATVASVKRSVRGNNLVDPYTEEEVDARYRLMLKPGESLNIITHNAVIDG
EVKFAQGTVFQQPPNTKSQTLLGCLKSGIPLDDFVLGGERGRRDSLAKRE
REKESSKKDGANTDERQSKRQAPSPTEASAKKTSPESISAAAAAAAAMNA
SASCSSVTAASLVAGLSTALKEKKAAAMSKSEKAAAAGESGLTVRYFSTL
DMKSDEDGSTQDNGERPPAKVKEGKEGKEGTRSSSSTGTGVGGVADHNGV
RGGVQDSALLLMSLVSELFI*
back to top

mRNA from alignment at H-paniculata_contig11149:979..6538-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11149.735.1 ID=mRNA_H-paniculata_contig11149.735.1|Name=mRNA_H-paniculata_contig11149.735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5560bp|location=Sequence derived from alignment at H-paniculata_contig11149:979..6538- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTCGGGACGAGGGTGTGCGTCGAGAAAGGGCACATGGCCACCGTGGC
GAGCGTGAAGCGGTCGGTTCGAGGGAATAACTTGGTGGACCCCTACACGG
AGGAAGAGGTGGATGCCCGCTACCGTCTCATGCTGAAGCCGGGCGAGGTA
TGTTCAGCGTAGTACATTACATTACAGTACAGTACAGTACAATAAAGTCG
GAAGTACATGAGTAATCGCAAGGTTTCTAACGAGAGCACGTGACGAGACG
GGATTTAGAGTCGTAGAGAGATTGCCACGAGAGGGGGGTAGGGAAGGGGG
AGCTAAAAATGTCGACGGCACTGGGCGGCATAGAGAAATCTTATTTTTTT
ATTTTTGGCGAAGGGGATACTGTCCTCGAAAAAAACGGGGTGAAATGGTA
TGGCACAAGATAATAGTATTGCCACGGCACAGGGCAGAGACTTGGGAGGG
AAAATGTGAACGGGACGGACCGGAGAAGGGAAGCATGAGGACGAGGACGA
GACGGTAAATGGGGAGTGCACTTGAGGTATGTGCGGGACAGAACCACAGA
CGTTGAAATTCCTTACGGAACCGTTCCGTGAACAATCGAGGCTCTTCCCG
CGGTTCTGTAAGCGTCCCATTGTGTCCCATAGTCCCTTCAAAAGCCCCGG
TTTAGAAAACTTTGGCAGGGGATCCCGTCCTGTCTCTTTCCGTGAGCATC
CCGTACGCATGTGGCGAGCCCTGAATGTTTGTGCCTTGAGGTATTCGACT
TTTCGAAGGTATAAATTGGTTGAAAGGTTTTGATGTACACGCACTGTATG
GTTATTTTTCTTGGATGTATAAGGTGCAAACTAGGAGACGAATTCATGGA
AATATCGTTCGTTAAATGGAAGCATCGGTAAAGGTTTTTGTCTCAGCCTT
CCGAGCGTTACAATATATATATATATATATCGTTCGTTAACCTCGCGATT
TAATATGTAATATGTTGTGTTTTCAATTCTGATATAGGGGAATTTTGGTC
GTTCGTTTGTTCACTCCAAGAAATGATGTTGTCGTTTAGACGTTTTTTTT
CTTTCAAGTCTGTGTTCCAGTACCTCATAGAGCCAAATTTTGATCGGCAC
GGTACTTAAGACGTGCGAATGTGCAAGCGAGTCTTTTTGACTGCAGTGCG
CCCGTTCGGCGTGGGTCACGGGGCTTGAATAAAGCGATACCAGGATGAAC
AGGTACTGGACGGGCGTAGCTGTGGCTAAGTACTAGTTCCGTTGAAAGTC
CCAGCTAGATGCAAGCTTGCGCACATGGGGCAGATCGGATCGTGAACGCA
TTGTATCCTTCATTTTTACGGGTAAAATCGAATAATCCGTATACCGTGTT
CGATCCGTACGTGTTTCTACACTGGCGATCGGTACTCTACGGATCTTTCG
CACATATTTATCCACTCGGGATTTCTACCCTAGCGATCATGCGTATGTAT
TTGTCCACTGATCTGTACGCTACAGTTCTTTTGGGGTCGTACGGGTCTTC
ATTCGTCTAATATGTGAAAACTTGCCATGTGATTCGCCAAAAATTACCTC
GAAAAATCATCACCATCACCATCACCACCGCCGCCGCCTAGCTAACCCTA
ATCCTGACGCATTATCGTTGATGGTGTTAATGTTGCTGTTACATTGCACT
GGACACGCGAAGTCGCTGAACATAATCACGCACAACGCGGTCATCGACGG
AGAGGTGAAATTTGCCCAGGGCACCGTCTTTCAACAGCCCCCCAATACGA
AGAGCCAAACGCTACTGGGCTGTCTTAAGAGTGGCATCCCCCTGGACGAC
TTCGTGCTTGGCGGCGAGCGAGGAAGGAGAGATAGCTTGGCCAAGCGAGA
GAGGGAAAAGGAGTCTAGTAAGAAGGATGGGGCGAATACTGATGAGCGAC
AGGTATGCAGGAATTTTGGTGGTAGTGGTGGTGGTGGGGGAGGGGTATTC
TCTGTCCGCATAACAAGAATAAATACCTCATTCACTCACCGTAATCCTCA
CTCACAAGTCATGCAACTTGCCGCAGTTAATAAATCCTAAACGTTGATAT
TATTCATCCGTTGTACCCATGTTGAGTTTATGCGGTGGAAGTGGATCTTG
GTTGTGTAAAGAAACAAAATTTATCAGCAAAATTACAGTAGATCAAACAA
GCAGCATGAAAAGTGGGGGGGTTTATGGTGTGGTGCTATGATTTTTTCTT
GTCGGCACGTCCAATTGTTAAATACGGCTGTCAAATCCCGGTGGTTCGCG
GTTGTTGTGGTGGTGCTTTGGCTGCCATGGTCTTGTATCCACGTACAGTC
CATGACCTACGAAAAATATTACAAAATTTGAACGAAAGTATGTTGAAGTG
ATAGGGGTGCGCCTATCCCCGATTTGAGGCCCATTTTTGGTCACAATTAC
CACATAGTAAAGCGCCGAATAAAGAAAAAAAATATGTATATATATATATT
TCCCCTGACAGATAAAGTCACCTACATCCCGCGAAGTACTTGTATTCAGT
GTCGGGTTTCCACGCACTTGTAACCTGAATTGCTTGATACAGGTTAGGAA
CTGGCTCGTGAGACTCAGCATACACTTGGGTATGTGCCTAATCTAGGGCT
TGATTTTCTTGGAGTTTTAATCCGCGTTATGAGAATTCCAAACTCTCCAA
TAAACTGTGTTTTTTCTGCTACTTTCTCTGTGAAAATGTTTTTTCCTCAT
GACTTGAAAGGTACAGAAGATGAACCCCTAACTGTGGTTTTCGCGCATAC
GATGCAAAAAACCGCACCCCAATCGACGACCTAGCTGAGGAGTATATTTG
TTCACAAGATAGCTCATGAACACAAACAAGTACCCAAAACTACTCGAATT
TAAAGTGGTCCACCAACACCAAAAAAACACCCAAAATTACTCGAATTTAG
AGAGCGGGAGAGGGCATCCTTTTCGAACGTAAATATTCTTCACACATGTG
GTCGTTAGGGGACGTTTGGATGGTCCTAGGGGCATAACTCGCATTGCGTA
TTGCAATAGTTGTAGCTCGTTGTTGTAACCAGCATTCTCAGAGTCCCTAG
GCACTCGAAACTTGGCTTGCTCGGCCTTTTTACGGTCTAGTTGTGAGCTG
CACCAGTACATGATCTTCGAGGCCAGAGTCTCGTGCCGTCCTAAATTACC
ATCCGCCGCGTTTCGGCGGGCCGCACAAGGTTTTGCTGCCACCTCGTACC
GACAGTAGTGAAAACCAACCCGTTCATCTGAGACCATCCGATATTGGAAG
AGTCGCTTCTTTTGGTATTGTACCAGACAGAACCAAGCAATGCTACAAAA
TGTTAATGCGGCCACTCATGCCACGATCCCCAAGAGTGCCCATGAAGCAC
TCACTCTCCATCCCTGACGTCACGGCGATGTGGAGGATATGCAGCAGGCA
ATCAATGCGTGTTGCATAGATGGTGGGAGGTGCAATCGCTGCTGCTGTTT
CTACTTCTGTATCCTGGCATGTAGCAGCGGTCGGGAGCGGCTGCTCTTGC
TTGTGCTCGGCCATTTTCCCATGCCGTCCGGCCACTGGATGCGGTTTACT
CGGGCTGGTGTAGGATGCCGTGCGTGCTGTGTGCGCAGATGCTACTACTG
TTGCACTCAGAGGGAGGCAGTGAGAGGCAGCTCTCGCGTGTGGATCAGTC
TCTCTGTTCTGTCTGTAGCTCCTCAGCCTTTCCGATGGCTTCTTTGTGAT
TACTCGTGTTTTCGTAAGTTTTGGATATCCTGCCTCTTTCGGGACTACTC
ATTTTTTAGTTTCTTTAGCTTACACTGGGTCTCTCGGTGTTTATTATGAT
TATTTTTTTTATTATCAGGTGACTTCGGGTCTCCCCACGGTTGTGTGTGT
GTGCTTTTGTGGGTGACGTGAACTTTTTTTTTTTTCTTGGCCCAAACCCT
CTAAATAGCCGGCAATAAAAACGTGGTCTCTGCGACATAATTACCGTACT
ATAGAGGACTTGGGCGCACCCCTAACTGTAAACTGTTCCGACATTGGGCG
TCACTACACTACAAGCTACAGTATTTCTCTCCTCCCTCATTCCTCCTTTT
CAAATATTCACCAAATCAAAGATTCAACTACAAATTCATTACTTAGAGGT
GTGCGATAATATATGTATAAGGTATTCCATAATCATCACCACCACGATAA
TCGCGAGAATCACATTACTTAACCACCCCCCGAAAGCTTCGTCCTCCCGA
GTACACGTGGTCAATGGTCTAACGAATGTGGCTCCGAGGCATGAGTACGA
CCCCTTCTACTAGCAGGTCACGTCGGTATTTGTATTAAGTGCTCACTTTG
TAGGTCATGGCATGTCTACATGCAGTGCAATGATCATTTCTTCCCTCGAT
CCCCTCCCCCCCCCCCGTCCTAGTCAAAACGCCAGGCGCCTTCGCCCACC
GAAGCGTCGGCGAAGAAGACCTCGCCGGAATCCATCTCAGCCGCGGCCGC
AGCAGCGGCGGCGATGAATGCATCGGCGTCTTGTTCATCGGTGACTGCCG
CGAGCCTGGTAGCCGGGCTGTCCACCGCGTTGAAAGAGAAGAAGGCGGCG
GCGATGTCCAAGTCTGAGAAGGCGGCCGCCGCTGGAGAGTCGGGCCTGAC
AGTCCGATATGTGAGTGCTGTACGGCACAGGGCAACAGTTCAAAAGCGCC
TCATTGGCGTGGGCCTCATGGTCTGTGTAGCCCTTAACCCTCCACAACCG
TTCGTTAATCTAATTGTTTAATACGGCATTGGTAAGGTGGTGATGGTGGT
GATGGAGAGCGCGTCCGTGTGTCGAGGACAGGCACGAATATTATAGGCGT
AGTCGCAACGGCGCCGTTACAACCATGGATTGAACTAGTACGGCCAGTGA
GCGAGGGGCTCAGATCCCCTGGCTACCTGTAGACAGGCTGGTAGCGTATC
TAACTCAGAGCCCCCTAGTACTATCATCATGTTGGCGTATGTGTTGTTCA
CACCGTTCGTCCGATTGATTCCCTCCATTTTTTTTTTTTTGCCATTCCCT
TTTCCCCCTAACCGATCCCAATTGGTATCCATATCGCTGCAGTTCTCTAC
CCTTGACATGAAATCCGATGAGGATGGCAGTACTCAAGACAACGGTGAGC
GGCCGCCAGCAAAGGTGAAGGAAGGCAAAGAAGGGAAAGAAGGTACCAGA
AGCAGCAGCAGCACGGGCACTGGCGTTGGAGGTGTGGCCGATCACAACGG
GGTGCGTGGGGGCGTTCAGGACTCGGCGCTATTGTTGATGTCCTTGGTAA
GTGAGTTGTTTATTTGACCAAAAGATGAAGAATTTCGACATTCGTTTGCT
CTGGTGTTAGCTTTTGTCCCCCTGAAACCGGTACGAATTATTTGACCGCA
GGGTCTGAGGAGAGATGGAATTGGGTGAGGTGAAGGAAGAGGCATTGACC
GTCGTTGCAGGCAATATAGTCGTCGTACTGACTAGTCGCTCTCTTGAATC
AATGCGACATGCTTGTCTTGCATTGCAATCATCTTGAAGCCCCTAACGTA
GCGTAGAAATCGTTCCCGTCATGTGCGACGGCGGTTGAGAGGTACTGAGC
AAAGGAAGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11149:979..6538-

>mRNA_H-paniculata_contig11149.735.1 ID=mRNA_H-paniculata_contig11149.735.1|Name=mRNA_H-paniculata_contig11149.735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig11149:979..6538- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCACCGTGGCGAGCGTGAAGCGGTCGGTTCGAGGGAATAACTTGGT
GGACCCCTACACGGAGGAAGAGGTGGATGCCCGCTACCGTCTCATGCTGA
AGCCGGGCGAGATGGCCACCGTGGCGAGCGTGAAGCGGTCGGTTCGAGGG
AATAACTTGGTGGACCCCTACACGGAGGAAGAGGTGGATGCCCGCTACCG
TCTCATGCTGAAGCCGGGCGAGTCGCTGAACATAATCACGCACAACGCGG
TCATCGACGGAGAGGTGAAATTTGCCCAGGGCACCGTCTTTCAACAGCCC
CCCAATACGAAGAGCCAAACGCTACTGGGCTGTCTTAAGAGTGGCATCCC
CCTGGACGACTTCGTGCTTGGCGGCGAGCGAGGAAGGAGAGATAGCTTGG
CCAAGCGAGAGAGGGAAAAGGAGTCTAGTAAGAAGGATGGGGCGAATACT
GATGAGCGACAGTCGCTGAACATAATCACGCACAACGCGGTCATCGACGG
AGAGGTGAAATTTGCCCAGGGCACCGTCTTTCAACAGCCCCCCAATACGA
AGAGCCAAACGCTACTGGGCTGTCTTAAGAGTGGCATCCCCCTGGACGAC
TTCGTGCTTGGCGGCGAGCGAGGAAGGAGAGATAGCTTGGCCAAGCGAGA
GAGGGAAAAGGAGTCTAGTAAGAAGGATGGGGCGAATACTGATGAGCGAC
AGTCAAAACGCCAGGCGCCTTCGCCCACCGAAGCGTCGGCGAAGAAGACC
TCGCCGGAATCCATCTCAGCCGCGGCCGCAGCAGCGGCGGCGATGAATGC
ATCGGCGTCTTGTTCATCGGTGACTGCCGCGAGCCTGGTAGCCGGGCTGT
CCACCGCGTTGAAAGAGAAGAAGGCGGCGGCGATGTCCAAGTCTGAGAAG
GCGGCCGCCGCTGGAGAGTCGGGCCTGACAGTCCGATATTCAAAACGCCA
GGCGCCTTCGCCCACCGAAGCGTCGGCGAAGAAGACCTCGCCGGAATCCA
TCTCAGCCGCGGCCGCAGCAGCGGCGGCGATGAATGCATCGGCGTCTTGT
TCATCGGTGACTGCCGCGAGCCTGGTAGCCGGGCTGTCCACCGCGTTGAA
AGAGAAGAAGGCGGCGGCGATGTCCAAGTCTGAGAAGGCGGCCGCCGCTG
GAGAGTCGGGCCTGACAGTCCGATATTTCTCTACCCTTGACATGAAATCC
GATGAGGATGGCAGTACTCAAGACAACGGTGAGCGGCCGCCAGCAAAGGT
GAAGGAAGGCAAAGAAGGGAAAGAAGGTACCAGAAGCAGCAGCAGCACGG
GCACTGGCGTTGGAGGTGTGGCCGATCACAACGGGGTGCGTGGGGGCGTT
CAGGACTCGGCGCTATTGTTGATGTCCTTGGTAAGTGAGTTGTTTATTTG
ATTCTCTACCCTTGACATGAAATCCGATGAGGATGGCAGTACTCAAGACA
ACGGTGAGCGGCCGCCAGCAAAGGTGAAGGAAGGCAAAGAAGGGAAAGAA
GGTACCAGAAGCAGCAGCAGCACGGGCACTGGCGTTGGAGGTGTGGCCGA
TCACAACGGGGTGCGTGGGGGCGTTCAGGACTCGGCGCTATTGTTGATGT
CCTTGGTAAGTGAGTTGTTTATTTGA
back to top