mRNA_H-paniculata_contig2684.7341.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2684.7341.1 vs. uniprot
Match: G4YKY0_PHYSP (DNA topoisomerase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YKY0_PHYSP) HSP 1 Score: 62.0 bits (149), Expect = 1.670e-8 Identity = 26/49 (53.06%), Postives = 29/49 (59.18%), Query Frame = 1
Query: 232 VPRCQGHNNECALRTVRKEGANQGRQFYCCGGTEADQCNTFIWADEVGS 378
P C GHN C LRT R+ G NQ R+FY C AD C F W DE+GS
Sbjct: 804 APLCSGHNVSCILRTTRRPGPNQNREFYSCSFQGADSCGYFEWKDEMGS 852
BLAST of mRNA_H-paniculata_contig2684.7341.1 vs. uniprot
Match: A0A2V0NPE8_9CHLO (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NPE8_9CHLO) HSP 1 Score: 60.8 bits (146), Expect = 4.150e-8 Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1
Query: 235 PRCQGHNNECALRTVRKEGANQGRQFYCC----GGTEADQCNTFIWA 363
PRC+GHN EC +RTV+K+G +GRQFYCC G +C+ F+W+
Sbjct: 704 PRCKGHNEECVVRTVKKDGPTKGRQFYCCARASGPPGVGRCDYFLWS 750
BLAST of mRNA_H-paniculata_contig2684.7341.1 vs. uniprot
Match: A0A8C2YA87_COTJA (DNA-(apurinic or apyrimidinic site) lyase n=3 Tax=Phasianidae TaxID=9005 RepID=A0A8C2YA87_COTJA) HSP 1 Score: 60.1 bits (144), Expect = 7.410e-8 Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 1
Query: 235 PRCQGHNNECALRTVRKEGANQGRQFYCCGGTEADQCNTFIWAD 366
PRC H + C LRTVRK+G N+GR FYCC +CN F WAD
Sbjct: 488 PRCSKHGHLCKLRTVRKDGENKGRMFYCCPLPTETRCNYFQWAD 531
BLAST of mRNA_H-paniculata_contig2684.7341.1 vs. uniprot
Match: A0A7J7F354_DICBM (DNA-(apurinic or apyrimidinic site) lyase n=2 Tax=Rhinocerotidae TaxID=9803 RepID=A0A7J7F354_DICBM) HSP 1 Score: 59.7 bits (143), Expect = 1.000e-7 Identity = 26/44 (59.09%), Postives = 29/44 (65.91%), Query Frame = 1
Query: 235 PRCQGHNNECALRTVRKEGANQGRQFYCCGGTEADQCNTFIWAD 366
PRC H+ CALR VRK+GAN+GRQFY C QC F WAD
Sbjct: 470 PRCSKHHRLCALRVVRKDGANKGRQFYACPLPREAQCGFFQWAD 513
BLAST of mRNA_H-paniculata_contig2684.7341.1 vs. uniprot
Match: A0A7S2S3I4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3I4_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.350e-7 Identity = 31/49 (63.27%), Postives = 32/49 (65.31%), Query Frame = 1
Query: 223 DGDVPRCQGHNNECALRTVRKEGANQGRQFYCCGGTEADQCNTFIWADE 369
DG+ P C H A TVRKEGANQGRQFY C EA CNTF WADE
Sbjct: 99 DGNDPTCPVHKGALAKLTVRKEGANQGRQFYKC--KEAG-CNTFQWADE 144
BLAST of mRNA_H-paniculata_contig2684.7341.1 vs. uniprot
Match: F6WTV1_HORSE (DNA-(apurinic or apyrimidinic site) lyase n=8 Tax=Equus TaxID=9789 RepID=F6WTV1_HORSE) HSP 1 Score: 58.9 bits (141), Expect = 1.880e-7 Identity = 26/49 (53.06%), Postives = 30/49 (61.22%), Query Frame = 1
Query: 220 GDGDVPRCQGHNNECALRTVRKEGANQGRQFYCCGGTEADQCNTFIWAD 366
G+ PRC H+ CALR VRK+G N+GRQFY C QC F WAD
Sbjct: 501 GNASSPRCSQHHRLCALRVVRKDGENKGRQFYACPLPREAQCGFFQWAD 549
BLAST of mRNA_H-paniculata_contig2684.7341.1 vs. uniprot
Match: UPI0009A44B54 (endonuclease 8-like 3 n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A44B54) HSP 1 Score: 57.0 bits (136), Expect = 8.590e-7 Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1
Query: 229 DVPRCQGHNNECALRTVRKEGANQGRQFYCCGGTEADQCNTFIWAD 366
+ P C+ H+ C LR V+KEG N+GRQFY C + QC+ F WAD
Sbjct: 410 ETPCCKKHSRPCTLRLVKKEGDNEGRQFYVCSLPQESQCDYFQWAD 455
BLAST of mRNA_H-paniculata_contig2684.7341.1 vs. uniprot
Match: A0A822CY91_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822CY91_9NEOB) HSP 1 Score: 55.8 bits (133), Expect = 1.840e-6 Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 1
Query: 235 PRCQGHNNECALRTVRKEGANQGRQFYCCGGTEADQCNTFIWAD 366
P C HN ALR VRK+G N+GRQFY C + QC+ F WAD
Sbjct: 224 PHCSKHNRPSALRVVRKDGENKGRQFYSCALPKERQCDYFQWAD 267
BLAST of mRNA_H-paniculata_contig2684.7341.1 vs. uniprot
Match: A0A0P7WVC2_SCLFO (Uncharacterized protein (Fragment) n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7WVC2_SCLFO) HSP 1 Score: 55.8 bits (133), Expect = 2.030e-6 Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 1
Query: 235 PRCQGHNNECALRTVRKEGANQGRQFYCCGGTEADQCNTFIWAD 366
P C H CALR VRKEG N+GRQFY C + +C+ F WAD
Sbjct: 265 PCCAVHRRPCALRVVRKEGDNKGRQFYACSLPQETRCDFFKWAD 308
BLAST of mRNA_H-paniculata_contig2684.7341.1 vs. uniprot
Match: UPI0018F31E14 (DNA-(apurinic or apyrimidinic site) lyase 2 n=1 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F31E14) HSP 1 Score: 55.8 bits (133), Expect = 2.160e-6 Identity = 26/50 (52.00%), Postives = 29/50 (58.00%), Query Frame = 1
Query: 235 PRCQGHNNECALRTVRKEGANQGRQFYCCGGTE------ADQCNTFIWAD 366
P C GH C LRTVRK G +QGRQFY C E A +CN F WA+
Sbjct: 427 PNCSGHQEPCLLRTVRKPGPSQGRQFYICAHPEGSVSNPASRCNFFRWAN 476 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2684.7341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2684.7341.1 >prot_H-paniculata_contig2684.7341.1 ID=prot_H-paniculata_contig2684.7341.1|Name=mRNA_H-paniculata_contig2684.7341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp VVDDEEDAYGAAIKGIAPKKKRGGGTGGGSSGVGANKRVATSRLGQATGRback to top mRNA from alignment at H-paniculata_contig2684:6970..10799- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2684.7341.1 ID=mRNA_H-paniculata_contig2684.7341.1|Name=mRNA_H-paniculata_contig2684.7341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3830bp|location=Sequence derived from alignment at H-paniculata_contig2684:6970..10799- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2684:6970..10799- >mRNA_H-paniculata_contig2684.7341.1 ID=mRNA_H-paniculata_contig2684.7341.1|Name=mRNA_H-paniculata_contig2684.7341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig2684:6970..10799- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |