prot_H-paniculata_contig26831.7338.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig26831.7338.1
Unique Nameprot_H-paniculata_contig26831.7338.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length165
Homology
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5JRC6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC6_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 9.730e-17
Identity = 54/151 (35.76%), Postives = 84/151 (55.63%), Query Frame = 0
Query:    4 PKDKLVVRTKMLHKGKVRKDGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 150
            P+ +  V +K     K  K+GK++K+K RLVA+GL +I  + Y   +SP   + SI++++  A+ K   L H+DV QA   A  D+E ++++P      S  + K  +AI  L  +GR W     D +    FEQ +A  C+FRK+VD VV
Sbjct:  410 PEGRRPVGSKWCFSWKTNKEGKIEKFKARLVARGLWQIPNVDYFHSFSPCPLSVSIKLMLAVASKKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKHSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVV 560          
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5KVP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP5_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.090e-16
Identity = 56/151 (37.09%), Postives = 84/151 (55.63%), Query Frame = 0
Query:    4 PKDKLVVRTKMLHKGKVRKDGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 150
            PK++  V +K     K  K+GK+DK+K RLVA+G  +I  + Y    SP  ++ASI++++  A  K   L H+DV QA   A  D+E ++ +P      S  + +  +AI  L Q+GR W     D +    FEQ +A  C+FRK+VD VV
Sbjct:  117 PKERRPVSSKWCFCWKTNKEGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLHHWDVKQAYTHATLDEEIFLRLPAGCGEKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVV 267          
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5KFJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ3_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 4.010e-16
Identity = 55/151 (36.42%), Postives = 84/151 (55.63%), Query Frame = 0
Query:    4 PKDKLVVRTKMLHKGKVRKDGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 150
            P+ +  V +K     K  KDGK++K+K RLVA+G  +I  + Y    SP  ++ASI++++  A  K+ +L H+DV QA   A  D++ ++ +P      S  V K  +AI  L Q+GR W     D +    FEQ +A  C+FRK+ D VV
Sbjct:  157 PEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVV 307          
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.560e-16
Identity = 55/151 (36.42%), Postives = 81/151 (53.64%), Query Frame = 0
Query:    4 PKDKLVVRTKMLHKGKVRKDGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 150
            P+ +  V  K     K   +GK+ K+K RLVA+G  +I  + Y    SP  ++ASI++++  A  K   L H+DV QA   A  D+E ++ +P      S  +GK  +AI  L Q+GR W     D +    FEQ +A  C+FRK+VD VV
Sbjct:  201 PEGRRPVSPKWCFSWKTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVV 351          
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 7.680e-16
Identity = 51/132 (38.64%), Postives = 76/132 (57.58%), Query Frame = 0
Query:   23 DGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 150
            +GK+DK+K RLVA+G  +I  + Y    SP  ++ASI++++  A  K   L H+DV QA   A  D+E ++++P      S  + K  +AI  L Q+GR W     D +    FEQ +A  C+FRK+VD VV
Sbjct:   95 EGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVV 226          
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5JJY0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY0_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 9.220e-16
Identity = 54/145 (37.24%), Postives = 82/145 (56.55%), Query Frame = 0
Query:   10 VRTKMLHKGKVRKDGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 150
            V +K     KV K+G++DK+K RLVA+G  +I  + Y    SP  ++ASI++++  A  K   L H+DV QA+  A  D+E ++++P      S  + K   AI  L Q+ R W     D +    FE+ +A RC+FRK+VD VV
Sbjct:  668 VSSKWCFSWKVNKEGRIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAHTHATLDEEVFLKLPAGCGDRSYKIVKAEPAIYGLKQSERQWGYLAADTLVENGFEECKADRCVFRKMVDEVV 812          
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.530e-15
Identity = 55/151 (36.42%), Postives = 84/151 (55.63%), Query Frame = 0
Query:    4 PKDKLVVRTKMLHKGKVRKDGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 150
            P+ +  V +K     K  KDGK++K+K RLVA+G  +I  + Y    SP  ++ASI++++  A  K+ +L H+DV QA   A  D++ ++ +P      S  V K  +AI  L Q+GR W     D +    FEQ +A  C+FRK+ D VV
Sbjct:   39 PEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVV 189          
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5K4Y9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Y9_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.720e-15
Identity = 51/133 (38.35%), Postives = 75/133 (56.39%), Query Frame = 0
Query:   22 KDGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 150
            K+GK+D +K RLV +G  +I  + Y    SP  ++ASI++++  A  K   L H+DV QA   A  D+E ++ +P      S  + K  +AI  L Q+GR W     D +    FEQ +A RC+FRK+VD VV
Sbjct:  862 KEGKIDTFKARLVVRGFSQIPNVDYLHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRLPAGCREKSQKIVKAERAIYGLKQSGRQWGYHAADSLVENGFEQCKADRCVFRKMVDEVV 994          
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.320e-15
Identity = 52/136 (38.24%), Postives = 78/136 (57.35%), Query Frame = 0
Query:   19 KVRKDGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 150
            K  KDGK++K+K RLVA+G  +I  + Y    SP  ++ASI++++  A  K+ +L H+DV QA   A  D++ ++ +P      S  V K  +AI  L Q+GR W     D +    FEQ +A  C+FRK+ D VV
Sbjct: 1443 KTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVV 1578          
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.380e-15
Identity = 54/151 (35.76%), Postives = 82/151 (54.30%), Query Frame = 0
Query:    4 PKDKLVVRTKMLHKGKVRKDGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 150
            P+ +  V +K     K  K+GK+DK+K R+VA+G  ++  + Y    SP  ++ASI +++  A  K   L H+DV QA+  A  D+E +  +P      S  + K  +AI  L Q+GR W     D +    FEQ +A  C+FRK+VD VV
Sbjct:  885 PEGRRPVSSKWCFSWKTNKEGKIDKFKARVVARGFSQLPNVDYFRSSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVV 1035          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRC6_9PHAE9.730e-1735.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KVP5_9PHAE1.090e-1637.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ3_9PHAE4.010e-1636.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLS1_9PHAE4.560e-1636.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFN5_9PHAE7.680e-1638.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJY0_9PHAE9.220e-1637.24CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5JCG0_9PHAE1.530e-1536.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4Y9_9PHAE1.720e-1538.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LGF7_9PHAE3.320e-1538.24Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQW4_9PHAE4.380e-1535.76Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..145
e-value: 3.4E-18
score: 66.2
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 9..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26831contigH-paniculata_contig26831:1494..1988 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26831.7338.1mRNA_H-paniculata_contig26831.7338.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig26831 1239..2657 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig26831.7338.1 ID=prot_H-paniculata_contig26831.7338.1|Name=mRNA_H-paniculata_contig26831.7338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp
MARPKDKLVVRTKMLHKGKVRKDGKVDKYKCRLVAQGLRIGGLHYTEKYS
PTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEVPFS
GVVGKLNKAIQSLVQAGRCWNIKFCDMTTTKFEQSRAHRCMFRKVVDGVV
RNPARGKVQIKGLQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2