mRNA_H-paniculata_contig2681.7333.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2681.7333.1 vs. uniprot
Match: A0A6H5L2A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A2_9PHAE) HSP 1 Score: 456 bits (1172), Expect = 3.280e-136 Identity = 378/818 (46.21%), Postives = 461/818 (56.36%), Query Frame = 1
Query: 1165 MRAVGGWAPALRXXXXXXXXXXXXXXXXYNVALSVIARSGRDDVALXXXXXXXXXXXXXXXXXXXXXXXXXXVSENWHEAVRLLEEDMVDAKIQPDVVTLTSVIHACSGPGGNWEKAYKLLDQMYQNESSALPNKSTYDXXXXXXXXXXXXXXXXXXXXDMADVGIALDTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERAKQVFDEARYVHRLIPTLHIYGALLSCLADCQQWSDVLLYLDRMAADGVAPDSAAIATGVLAAAQLGYGRRALSLLDGEKWIG--GGGNTDPLHGNSEEEDPVSDRKL-------PRGISACQKGAGG------------------------------KWDGVETVEEGKW------------------------DKEEGIKST-------TLATGGWEALTPTLLTTLLHALEHEKEDAIVLGTVRRAREAGVVLNSRIYRQVMQELGRQVCALKACGNLGDCSQANHLLSQMQEENLMPNIMHWNHALRTTTACAHWRQAHSHLRAMHAAGVTPDEFSYMMALKACSAGLWSGNSWDEIDGCGTQ-DRDTSAVAQPLDILGYM---GESPGANIPP-CRGRHALELLDEMKAFGIQLCERSLALAMAACLESHRDSHIG-----DRRSGPSENEHQLSEEALSLFDRLLETGVTPSSTTFALALKACARTANTSRASSLLLFMLDTHRAQASEPSFS--PSLWGAVQ--------------PHDGLPTLEVRPGHLASAIAAFDAAGDWGGAVGLWEEVLSRGVAPRSPGYAA 3330
M AV GW ALR YN ALSV+ARSGR+DVAL XXXXXXXXXXXX E W EAV LLE DM AK++ +GP GNWEKAY+LLD M+Q+ A P+K TYD DM D+GI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +RA ++FDEARYVHR+ P+L IYGALL LA+ ++W+DVL+Y+DRM ADGVA D+AA T VLAAA+LG GRRALSLL+G + GG + + EE SD +L R +A +G GG K G E+ + + E+G + T GGWE +TP LL ++L AL+ + ED+ VL V+R RE GV+LN IYR CALKACGNLGD QAN +L +M EE+L P+I+HWNHALR + ACA W++ L+ M +G TPDEFSY MALKACSAGLWSG+SW + G G + D+ + L+ G + G+ +P CRG++A+ELL EMK G++L + LAMAACLE HRD H D+ GP + +L+E AL LFDRL+ G TP++ +A ALKACARTAN RA++L FMLD A+ + S SL P P EVRP HLASAIAA+DAAGDW GA LW+E L RGV+PRSPGY A
Sbjct: 336 MTAVDGWGAALRLLEGVLPDVNT-----YNAALSVVARSGREDVALALLNRMRIDGXXXXXXXXXXXXDACASREKWQEAVELLEVDMPAAKVKXXXXXXXXXXXXXAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDEARYVHRIRPSLQIYGALLGALAEGERWADVLVYMDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQQRGGRQREMVRDAGGEEGGGSDNRLLWDGLQRRRRPAAVDEGDGGRGVVLGQGELEGETEALLGRRQRAATAAGEKRHGEESEVRARTRIRPCPEAARERQGVLGEQNCVDEESEDGTRRTGGDSDSVDDGVGGWEGVTPGLLISVLRALDEQDEDSAVLEAVKRGREKGVLLNPSIYR----------CALKACGNLGDYDQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLKEMETSGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDKSSCRRKNALNGEGQLDGSGDKKEPKVPQACRGKNAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEAALLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWFMLDAASPPAAVQTSSNLSSLRNGASGNYVADGQRRHSRPPSPPQPRPEVRPWHLASAIAAYDAAGDWTGAKQLWDEALRRGVSPRSPGYDA 1138
BLAST of mRNA_H-paniculata_contig2681.7333.1 vs. uniprot
Match: D7FQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ90_ECTSI) HSP 1 Score: 435 bits (1118), Expect = 6.720e-133 Identity = 341/736 (46.33%), Postives = 423/736 (57.47%), Query Frame = 1
Query: 1426 MVDAKIQPDVVTLTSVIHACSGPGGNWEKAYKLLDQMYQNESSALPNKSTYDXXXXXXXXXXXXXXXXXXXXDMADVGIALDTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERAKQVFDEARYVHRLIPTLHIYGALLSCLADCQQWSDVLLYLDRMAADGVAPDSAAIATGVLAAAQLGYGRRALSLLDG---EKWIGG-------------GGNTDPLHGNSEEEDPVSDRKLPRGIS----------------------------ACQKG----------------------AGGKWDGVETVEEGKWDK-EEGIKSTTLAT--------GGWEALTPTLLTTLLHALEHEKEDAIVLGTVRRAREAGVVLNSRIYRQVMQELGRQVCALKACGNLGDCSQANHLLSQMQEENLMPNIMHWNHALRTTTACAHWRQAHSHLRAMHAAGVTPDEFSYMMALKACSAGLWSGNSWDEIDGCGTQ-DRDTSAVAQPLDILGYM---GESPGANIPP-CRGRHALELLDEMKAFGIQLCERSLALAMAACLESHRDSHIG-----DRRSGPSENEHQLSEEALSLFDRLLETGVTPSSTTFALALKACARTANTSRASSLLLFMLDTHRAQAS--EPSFSPSLWGAVQ--------------PHDGLPTLEVRPGHLASAIAAFDAAGDWGGAVGLWEEVLSRGVAPRSPGYAA 3330
M AK++PDV++ TS IHAC+GP GNWEKAY+LLD M+Q+ A P+K TYD DM D+GI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +RA ++FD+ARYVHR+ P+L IYGALL LA+ ++W+DVL+YLDRM ADGVA D+AA T VLAAA+LG GRRALSLL+G + GG GG +D N + D + R+ P G+ A G A G+ GV E G ++ ++G + T + GGWE +TP LL ++L AL+ + ED+ VL V+R RE G++LN IYR CALKACGNLGD QAN +L +M EE+L P+I+HWNHALR + ACA W++ L+ M G TPDEFSY MALKACSAGLWSG+SW + G G + D +S L G + G+ +P CRG+ A+ELL EMK G++L + LAMAACLE HRD H D+ GP + +L+E L LFDRL+ G TP++ +A ALKACARTAN RA++L MLD A+ S + SL P P EVRP HLAS I A+DAAGDW GA LW+E L RGV+PRSPGY A
Sbjct: 1 MPAAKVKPDVISFTSAIHACAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDQARYVHRIRPSLQIYGALLGALAEGERWADVLVYLDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQQRGGRQRGVARDVVGEEGGGSD----NRQLCDGLQRRRRPAGVDEGDGIRGVVLGQGELEGEPEALLERRQRAATAGGEKRHGEESEVRARTRIRSSSEAAGERQGVVADENGVDEEAQDGTRRTERDSDSVDDGVGGGWEGVTPGLLNSVLRALDEQDEDSAVLEAVKRGREKGILLNQSIYR----------CALKACGNLGDYQQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLQEMETFGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDTSSSRRRNALSSEGQLDSSGDKQEPKVPQACRGKSAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEATLLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWVMLDDASPPAAVRTSSTASSLCNGASGDHVASGQRRHSPPPSPPQPRPEVRPWHLASTIVAYDAAGDWAGAKQLWDEALRRGVSPRSPGYDA 722
BLAST of mRNA_H-paniculata_contig2681.7333.1 vs. uniprot
Match: D7FQ89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ89_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 3.740e-5 Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1
Query: 418 IVAARNRRKWTEVLEVLDRWESQAEKLNAKTYNIALSALSKFG 546
++AA RR+WTEVLE+L WE A +L+AKTYN+ALSAL K G
Sbjct: 1 MMAAARRRRWTEVLEILGHWEENAGRLDAKTYNVALSALGKCG 43 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2681.7333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2681.7333.1 >prot_H-paniculata_contig2681.7333.1 ID=prot_H-paniculata_contig2681.7333.1|Name=mRNA_H-paniculata_contig2681.7333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1158bp MGQIDIVACAFCSTPPVLSSGLLFAPNLRGCHTRVRQRPRPTQTCSCFQQback to top mRNA from alignment at H-paniculata_contig2681:7088..15558+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2681.7333.1 ID=mRNA_H-paniculata_contig2681.7333.1|Name=mRNA_H-paniculata_contig2681.7333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8471bp|location=Sequence derived from alignment at H-paniculata_contig2681:7088..15558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2681:7088..15558+ >mRNA_H-paniculata_contig2681.7333.1 ID=mRNA_H-paniculata_contig2681.7333.1|Name=mRNA_H-paniculata_contig2681.7333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6948bp|location=Sequence derived from alignment at H-paniculata_contig2681:7088..15558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |