mRNA_H-paniculata_contig26803.7331.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26803.7331.1
Unique NamemRNA_H-paniculata_contig26803.7331.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26803.7331.1 vs. uniprot
Match: A0A6H5KMF3_9PHAE (Hist_deacetyl domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMF3_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.130e-43
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1 
Query:    7 QPLVLDVGMPLPENDDTPGASRHRWRDVYRREILPKLAAFDPDLILVSAGFDAHKKDSINFGYIGLLEEDYEWVTQQLVQVHYGSC 264
            +PLVLDVGMPLPE  DTPGASRHRWRDVYR++ILPKL AFDPD+ILVSAGFDAHKKD IN+GYIGLLEEDYEWVTQQLVQV    C
Sbjct:  868 EPLVLDVGMPLPEIGDTPGASRHRWRDVYRKDILPKLVAFDPDIILVSAGFDAHKKDVINYGYIGLLEEDYEWVTQQLVQVANRCC 953
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BLAST of mRNA_H-paniculata_contig26803.7331.1 vs. uniprot
Match: A0A835YM84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM84_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.770e-32
Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:   10 PLVLDVGMPLPENDDTPGASRHRWRDVY---------RREILPKLAAFDPDLILVSAGFDAHKKDSINFGYIGLLEEDYEWVTQQLVQVHYGSC 264
            P++LDVG+PLP+  DTPG SR +WR+ Y         R+E+LP L  F+PD+IL+SAGFDAH+KD INFGYIGLL+EDYEWVT QLVQV    C
Sbjct:  805 PMILDVGLPLPQPHDTPGRSRLQWRNAYSXXXXXXXHRKEVLPALVEFNPDIILISAGFDAHRKDVINFGYIGLLDEDYEWVTAQLVQVANRCC 898
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BLAST of mRNA_H-paniculata_contig26803.7331.1 vs. uniprot
Match: A0A7S2FDC1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDC1_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.020e-31
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 SAQPLVLDVGMPLPENDDTPGASRHRWRDVYRREILPKLAAFDPDLILVSAGFDAHKKDSINFGYIGLLEEDYEWVTQQLVQVHYGSC 264
            + +P +++ G  L   D TPG +R  WRD YRR ILPKLA F+PDLIL+SAGFDAHKKD++  G+IGLLE+DY WVTQQLV+V    C
Sbjct:    2 AGEPKIINFGFALLSPDATPGTARLEWRDAYRRTILPKLAEFNPDLILISAGFDAHKKDTMACGFIGLLEDDYTWVTQQLVKVANKCC 89
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BLAST of mRNA_H-paniculata_contig26803.7331.1 vs. uniprot
Match: A0A7S1E613_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E613_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.710e-29
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:   16 VLDVGMPLPENDDTPGASRHRWRDVYRREILPKLAAFDPDLILVSAGFDAHKKDSINFGYIGLLEEDYEWVTQQLVQVHYGSC 264
            +L+ G+ LP  D  PG  R   RD YR+ +LP+L  FDPD+I +SAGFDAH+KD++NFGY+G++E+DYEWVT+Q+V+V    C
Sbjct:   56 ILNCGLGLPPRDAIPGMQRLELRDTYRKSVLPRLREFDPDIIFISAGFDAHRKDTMNFGYVGMVEDDYEWVTEQIVKVANSCC 138
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BLAST of mRNA_H-paniculata_contig26803.7331.1 vs. uniprot
Match: A0A7S2QZ77_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2QZ77_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.110e-29
Identity = 49/83 (59.04%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:   16 VLDVGMPLPENDDTPGASRHRWRDVYRREILPKLAAFDPDLILVSAGFDAHKKDSINFGYIGLLEEDYEWVTQQLVQVHYGSC 264
            ++++G+ LP+ DD PG  R   RD YR+EILP L  FDPD+I +SAGFDAHK+DS+NFGY+G++E+DYEWVT+QLV+V    C
Sbjct:  518 IINMGLSLPKPDDIPGMQRIEVRDSYRKEILPHLMDFDPDIIFISAGFDAHKRDSMNFGYVGMVEDDYEWVTEQLVKVANACC 600
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BLAST of mRNA_H-paniculata_contig26803.7331.1 vs. uniprot
Match: A0A7R9UCK2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCK2_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.090e-29
Identity = 51/83 (61.45%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:   16 VLDVGMPLPENDDTPGASRHRWRDVYRREILPKLAAFDPDLILVSAGFDAHKKDSINFGYIGLLEEDYEWVTQQLVQVHYGSC 264
            +LD+G+ LP N + PG SR+R+RD YR+ ILP+L AF PDLIL+SAGFD HKKD INFG++GL+EED+EWVT +L++V    C
Sbjct:  328 ILDLGLALP-NMEVPGTSRYRFRDGYRKVILPRLMAFKPDLILISAGFDGHKKDDINFGFLGLVEEDFEWVTDELIKVANSCC 409
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BLAST of mRNA_H-paniculata_contig26803.7331.1 vs. uniprot
Match: A0A7S4IZS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IZS9_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.510e-28
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:   16 VLDVGMPLPENDDTPGASRHRWRDVYRREILPKLAAFDPDLILVSAGFDAHKKDSINFGYIGLLEEDYEWVTQQLVQVHYGSC 264
            +++VG+ LP   D PG  R   RD YR+ ILP L  FDPD+I VSAGFDAHKKDS+NFGY+G++E+DYEWVT+QL++V    C
Sbjct:  385 IINVGLDLPRPHDVPGMQRVELRDSYRKNILPHLLDFDPDMIFVSAGFDAHKKDSMNFGYVGMVEDDYEWVTEQLIKVANSCC 467
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BLAST of mRNA_H-paniculata_contig26803.7331.1 vs. uniprot
Match: A0A7R9Z845_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z845_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.890e-28
Identity = 47/83 (56.63%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:   16 VLDVGMPLPENDDTPGASRHRWRDVYRREILPKLAAFDPDLILVSAGFDAHKKDSINFGYIGLLEEDYEWVTQQLVQVHYGSC 264
            ++++G+ LP   D PG  R   RD YR+ ILP L  FDPD+I +SAGFDAHKKD++NFGY+G++E+DYEWVT+QLV+V    C
Sbjct:  178 IINIGLDLPRPHDVPGMQRVELRDSYRKNILPHLLDFDPDMIFISAGFDAHKKDTMNFGYVGMVEDDYEWVTEQLVKVANSCC 260
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BLAST of mRNA_H-paniculata_contig26803.7331.1 vs. uniprot
Match: A0A7R9WSY4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WSY4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 5.840e-28
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:   16 VLDVGMPLPENDDTPGASRHRWRDVYRREILPKLAAFDPDLILVSAGFDAHKKDSINFGYIGLLEEDYEWVTQQLVQVHYGSC 264
            +++  + LP  D   G  R   RD YR++ILPKL  FDPD+I +SAGFDAHKKD++NFGY+G++E+DYEWVT+QLV++    C
Sbjct:   13 IMNCALGLPRPDAVAGMQRLELRDTYRQKILPKLREFDPDIIFISAGFDAHKKDTMNFGYVGMVEDDYEWVTEQLVKIANTCC 95
[Close]
BLAST of mRNA_H-paniculata_contig26803.7331.1 vs. uniprot
Match: A0A7S2UJ04_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ04_9STRA)

HSP 1 Score: 114 bits (286), Expect = 9.410e-28
Identity = 48/83 (57.83%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:   16 VLDVGMPLPENDDTPGASRHRWRDVYRREILPKLAAFDPDLILVSAGFDAHKKDSINFGYIGLLEEDYEWVTQQLVQVHYGSC 264
            +++ G+ +P  DD PG  R   RD YR++ILP L  FDPDLI +SAGFDAHKKD++NFGY+G++E+DYEWVT+QLV+V    C
Sbjct:  887 IINCGLDIPGPDDIPGMQRVELRDSYRKKILPYLMDFDPDLIFISAGFDAHKKDTMNFGYVGMIEDDYEWVTEQLVKVANTCC 969
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26803.7331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMF3_9PHAE1.130e-4384.88Hist_deacetyl domain-containing protein n=2 Tax=Ec... [more]
A0A835YM84_9STRA1.770e-3261.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FDC1_9STRA4.020e-3160.23Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1E613_9STRA3.710e-2954.22Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
A0A7S2QZ77_9STRA4.110e-2959.04Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7R9UCK2_9STRA7.090e-2961.45Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S4IZS9_9STRA1.510e-2859.04Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7R9Z845_9STRA1.890e-2856.63Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7R9WSY4_9STRA5.840e-2854.22Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2UJ04_9STRA9.410e-2857.83Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26803contigH-paniculata_contig26803:178..444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue1.9e-31
Seed eggNOG ortholog2880.D8LR52
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG1343@2759,KOG4177@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size267
Cds size237
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.6563234-CDS-H-paniculata_contig26803:177..4141622929804.6563234-CDS-H-paniculata_contig26803:177..414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26803 178..414 -
1691481018.508896-CDS-H-paniculata_contig26803:177..4141691481018.508896-CDS-H-paniculata_contig26803:177..414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26803 178..414 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.6787913-UTR-H-paniculata_contig26803:414..4441622929804.6787913-UTR-H-paniculata_contig26803:414..444Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26803 415..444 -
1691481018.519771-UTR-H-paniculata_contig26803:414..4441691481018.519771-UTR-H-paniculata_contig26803:414..444Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26803 415..444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26803.7331.1prot_H-paniculata_contig26803.7331.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26803 178..414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26803.7331.1

>prot_H-paniculata_contig26803.7331.1 ID=prot_H-paniculata_contig26803.7331.1|Name=mRNA_H-paniculata_contig26803.7331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MPLPENDDTPGASRHRWRDVYRREILPKLAAFDPDLILVSAGFDAHKKDS
INFGYIGLLEEDYEWVTQQLVQVHYGSC*
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mRNA from alignment at H-paniculata_contig26803:178..444-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26803.7331.1 ID=mRNA_H-paniculata_contig26803.7331.1|Name=mRNA_H-paniculata_contig26803.7331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig26803:178..444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGCGCAGCCCCTCGTGCTGGATGTGGGCATGCCCTTGCCAGAGAACGA
TGACACCCCGGGAGCGTCCAGGCACCGCTGGCGTGATGTGTACCGCAGAG
AGATCCTACCCAAGCTGGCGGCGTTCGACCCGGATCTGATACTGGTGAGC
GCTGGGTTCGACGCGCACAAGAAGGACTCGATCAACTTCGGGTACATCGG
CCTCTTGGAGGAGGATTACGAGTGGGTGACCCAGCAGCTCGTGCAGGTAC
ATTATGGCAGCTGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig26803:178..444-

>mRNA_H-paniculata_contig26803.7331.1 ID=mRNA_H-paniculata_contig26803.7331.1|Name=mRNA_H-paniculata_contig26803.7331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig26803:178..444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCTTGCCAGAGAACGATGACACCCCGGGAGCGTCCAGGCACCGCTG
GCGTGATGTGTACCGCAGAGAGATCCTACCCAAGCTGGCGGCGTTCGACC
CGGATCTGATACTGGTGAGCGCTGGGTTCGACGCGCACAAGAAGGACTCG
ATCAACTTCGGGTACATCGGCCTCTTGGAGGAGGATTACGAGTGGGTGAC
CCAGCAGCTCGTGCAGGTACATTATGGCAGCTGTTGAATGCCCTTGCCAG
AGAACGATGACACCCCGGGAGCGTCCAGGCACCGCTGGCGTGATGTGTAC
CGCAGAGAGATCCTACCCAAGCTGGCGGCGTTCGACCCGGATCTGATACT
GGTGAGCGCTGGGTTCGACGCGCACAAGAAGGACTCGATCAACTTCGGGT
ACATCGGCCTCTTGGAGGAGGATTACGAGTGGGTGACCCAGCAGCTCGTG
CAGGTACATTATGGCAGCTGTTGA
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