mRNA_H-paniculata_contig26789.7325.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26789.7325.1
Unique NamemRNA_H-paniculata_contig26789.7325.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26789.7325.1 vs. uniprot
Match: D7FXK3_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK3_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.110e-41
Identity = 91/153 (59.48%), Postives = 107/153 (69.93%), Query Frame = 1 
Query:    1 QLRGLREKGVEAASFTSAAGSKAQAAKAMADLLDAGRGRRGGDELVDGEGVSSSGSRS-GKGTRT----KLLYVTPEMLARNGKLASALEALSDRGLVSLLAVDEAHCVSSWGHDFRPAYLELGEFRKRRLRGVPCLALTATATVAVSCSTFK 444
            QLRGL EKGVEAAS TS++ S+++AA  M D+L  G G   G    +G      G  S   G R     KLLYVTPE LA+ G+L +AL  L+ RGL+SLLAVDEAHCVS+WGHDFRPAYLELG FRK+ L+GVPCLALTATAT  V C+  K
Sbjct:   87 QLRGLYEKGVEAASLTSSSASRSRAAAVMDDILAYGGGSGSGHSTKEGVTSEKGGPNSRADGARAAPKIKLLYVTPEKLAKGGELTTALAGLAKRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATEEV-CADIK 238
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BLAST of mRNA_H-paniculata_contig26789.7325.1 vs. uniprot
Match: A0A8C9TLY1_SCLFO (ATP-dependent DNA helicase n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9TLY1_SCLFO)

HSP 1 Score: 101 bits (252), Expect = 3.060e-22
Identity = 55/80 (68.75%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:  187 RTKLLYVTPEMLARNGKLASALEALSDRGLVSLLAVDEAHCVSSWGHDFRPAYLELGEFRKRRLRGVPCLALTATATVAV 426
            R KLLYVTPEML+ +      L  LS RGLVS LAVDEAHCVS WGHDFRP YL+LGE R   L GVPCLALTATA   V
Sbjct:  110 RLKLLYVTPEMLS-SASFQPCLSGLSSRGLVSYLAVDEAHCVSQWGHDFRPDYLKLGELRGL-LSGVPCLALTATAPARV 187
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BLAST of mRNA_H-paniculata_contig26789.7325.1 vs. uniprot
Match: A0A0P7XS53_SCLFO (ATP-dependent DNA helicase (Fragment) n=3 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7XS53_SCLFO)

HSP 1 Score: 101 bits (252), Expect = 3.430e-22
Identity = 55/80 (68.75%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:  187 RTKLLYVTPEMLARNGKLASALEALSDRGLVSLLAVDEAHCVSSWGHDFRPAYLELGEFRKRRLRGVPCLALTATATVAV 426
            R KLLYVTPEML+ +      L  LS RGLVS LAVDEAHCVS WGHDFRP YL+LGE R   L GVPCLALTATA   V
Sbjct:  110 RLKLLYVTPEMLS-SASFQPCLSGLSSRGLVSYLAVDEAHCVSQWGHDFRPDYLKLGELRGL-LSGVPCLALTATAPARV 187
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BLAST of mRNA_H-paniculata_contig26789.7325.1 vs. uniprot
Match: A0A0S7GWJ5_9TELE (RECQ5 (Fragment) n=3 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7GWJ5_9TELE)

HSP 1 Score: 97.1 bits (240), Expect = 4.070e-22
Identity = 51/79 (64.56%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:  178 KGTRTKLLYVTPEMLARNGKLASALEALSDRGLVSLLAVDEAHCVSSWGHDFRPAYLELGEFRKRRLRGVPCLALTATA 414
            K  + KLLY+TPEM+A +      L  L  RGL+S LAVDEAHCVS WGHDFRP YL+LGE R R + GVPCLALTATA
Sbjct:  108 KRPKLKLLYITPEMVA-SPSFQPCLTDLCSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGELRAR-IPGVPCLALTATA 184
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BLAST of mRNA_H-paniculata_contig26789.7325.1 vs. uniprot
Match: UPI001A97F915 (ATP-dependent DNA helicase Q5 isoform X2 n=1 Tax=Gasterosteus aculeatus aculeatus TaxID=481459 RepID=UPI001A97F915)

HSP 1 Score: 100 bits (250), Expect = 5.130e-22
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:  187 RTKLLYVTPEMLARNGKLASALEALSDRGLVSLLAVDEAHCVSSWGHDFRPAYLELGEFRKRRLRGVPCLALTATA 414
            + KLLY+TPEM+A +      L  L  RGL+S LAVDEAHCVS WGHDFRP YL+LGE R R LRGVPCLALTATA
Sbjct:  111 KLKLLYITPEMVA-SPSFQPCLSGLCSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGELRGR-LRGVPCLALTATA 184
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BLAST of mRNA_H-paniculata_contig26789.7325.1 vs. uniprot
Match: G3PIY1_GASAC (DNA helicase n=1 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3PIY1_GASAC)

HSP 1 Score: 100 bits (250), Expect = 6.340e-22
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:  187 RTKLLYVTPEMLARNGKLASALEALSDRGLVSLLAVDEAHCVSSWGHDFRPAYLELGEFRKRRLRGVPCLALTATA 414
            + KLLY+TPEM+A +      L  L  RGL+S LAVDEAHCVS WGHDFRP YL+LGE R R LRGVPCLALTATA
Sbjct:  107 KLKLLYITPEMVA-SPSFQPCLSGLCSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGELRGR-LRGVPCLALTATA 180
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BLAST of mRNA_H-paniculata_contig26789.7325.1 vs. uniprot
Match: UPI001A98D5B2 (ATP-dependent DNA helicase Q5 isoform X1 n=1 Tax=Gasterosteus aculeatus aculeatus TaxID=481459 RepID=UPI001A98D5B2)

HSP 1 Score: 100 bits (250), Expect = 6.370e-22
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:  187 RTKLLYVTPEMLARNGKLASALEALSDRGLVSLLAVDEAHCVSSWGHDFRPAYLELGEFRKRRLRGVPCLALTATA 414
            + KLLY+TPEM+A +      L  L  RGL+S LAVDEAHCVS WGHDFRP YL+LGE R R LRGVPCLALTATA
Sbjct:  111 KLKLLYITPEMVA-SPSFQPCLSGLCSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGELRGR-LRGVPCLALTATA 184
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BLAST of mRNA_H-paniculata_contig26789.7325.1 vs. uniprot
Match: UPI00188908D8 (ATP-dependent DNA helicase Q5 isoform X1 n=2 Tax=Pungitius pungitius TaxID=134920 RepID=UPI00188908D8)

HSP 1 Score: 100 bits (250), Expect = 6.390e-22
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:  187 RTKLLYVTPEMLARNGKLASALEALSDRGLVSLLAVDEAHCVSSWGHDFRPAYLELGEFRKRRLRGVPCLALTATA 414
            + KLLY+TPEM+A +      L  L  RGL+S LAVDEAHCVS WGHDFRP YL+LGE R R LRGVPCLALTATA
Sbjct:  134 KLKLLYITPEMVA-SPSFQPCLSGLCSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGELRGR-LRGVPCLALTATA 207
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BLAST of mRNA_H-paniculata_contig26789.7325.1 vs. uniprot
Match: A0A8C5EYA0_9TELE (ATP-dependent DNA helicase n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5EYA0_9TELE)

HSP 1 Score: 100 bits (249), Expect = 8.310e-22
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:  187 RTKLLYVTPEMLARNGKLASALEALSDRGLVSLLAVDEAHCVSSWGHDFRPAYLELGEFRKRRLRGVPCLALTATA 414
            R KLLY+TPEM+A +      L  L  RGL+S LAVDEAHCVS WGHDFRP YL+LGE R R L+GVPCLALTATA
Sbjct:  110 RLKLLYITPEMVA-SSSFQPCLTDLCSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGELRAR-LQGVPCLALTATA 183
[Close]
BLAST of mRNA_H-paniculata_contig26789.7325.1 vs. uniprot
Match: A0A8C5ENC6_9TELE (ATP-dependent DNA helicase n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5ENC6_9TELE)

HSP 1 Score: 100 bits (249), Expect = 8.690e-22
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:  187 RTKLLYVTPEMLARNGKLASALEALSDRGLVSLLAVDEAHCVSSWGHDFRPAYLELGEFRKRRLRGVPCLALTATA 414
            R KLLY+TPEM+A +      L  L  RGL+S LAVDEAHCVS WGHDFRP YL+LGE R R L+GVPCLALTATA
Sbjct:  110 RLKLLYITPEMVA-SSSFQPCLTDLCSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGELRAR-LQGVPCLALTATA 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26789.7325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXK3_ECTSI1.110e-4159.48ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A8C9TLY1_SCLFO3.060e-2268.75ATP-dependent DNA helicase n=2 Tax=Scleropages for... [more]
A0A0P7XS53_SCLFO3.430e-2268.75ATP-dependent DNA helicase (Fragment) n=3 Tax=Scle... [more]
A0A0S7GWJ5_9TELE4.070e-2264.56RECQ5 (Fragment) n=3 Tax=Poeciliopsis prolifica Ta... [more]
UPI001A97F9155.130e-2268.42ATP-dependent DNA helicase Q5 isoform X2 n=1 Tax=G... [more]
G3PIY1_GASAC6.340e-2268.42DNA helicase n=1 Tax=Gasterosteus aculeatus TaxID=... [more]
UPI001A98D5B26.370e-2268.42ATP-dependent DNA helicase Q5 isoform X1 n=1 Tax=G... [more]
UPI00188908D86.390e-2268.42ATP-dependent DNA helicase Q5 isoform X1 n=2 Tax=P... [more]
A0A8C5EYA0_9TELE8.310e-2268.42ATP-dependent DNA helicase n=1 Tax=Gouania willden... [more]
A0A8C5ENC6_9TELE8.690e-2268.42ATP-dependent DNA helicase n=1 Tax=Gouania willden... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26789contigH-paniculata_contig26789:165..2635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue9.5e-37
Seed eggNOG ortholog2880.D7FXK3
KEGG koko:K10901
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00295,M00414
Hectar predicted targeting categoryother localisation
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-28_002030.1
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons2
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.830803-CDS-H-paniculata_contig26789:164..4331622929803.830803-CDS-H-paniculata_contig26789:164..433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26789 165..433 +
1691481018.117389-CDS-H-paniculata_contig26789:164..4331691481018.117389-CDS-H-paniculata_contig26789:164..433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26789 165..433 +
1622929803.8440695-CDS-H-paniculata_contig26789:2460..26351622929803.8440695-CDS-H-paniculata_contig26789:2460..2635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26789 2461..2635 +
1691481018.1371722-CDS-H-paniculata_contig26789:2460..26351691481018.1371722-CDS-H-paniculata_contig26789:2460..2635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26789 2461..2635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26789.7325.1prot_H-paniculata_contig26789.7325.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26789 165..2635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26789.7325.1

>prot_H-paniculata_contig26789.7325.1 ID=prot_H-paniculata_contig26789.7325.1|Name=mRNA_H-paniculata_contig26789.7325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
QLRGLREKGVEAASFTSAAGSKAQAAKAMADLLDAGRGRRGGDELVDGEG
VSSSGSRSGKGTRTKLLYVTPEMLARNGKLASALEALSDRGLVSLLAVDE
AHCVSSWGHDFRPAYLELGEFRKRRLRGVPCLALTATATVAVSCSTFK
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mRNA from alignment at H-paniculata_contig26789:165..2635+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26789.7325.1 ID=mRNA_H-paniculata_contig26789.7325.1|Name=mRNA_H-paniculata_contig26789.7325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2471bp|location=Sequence derived from alignment at H-paniculata_contig26789:165..2635+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTGCGGGGCCTGCGCGAAAAGGGGGTGGAAGCAGCATCTTTTACCTC
TGCCGCTGGTTCCAAGGCCCAAGCGGCCAAGGCCATGGCAGATCTCCTTG
ACGCCGGCAGGGGACGAAGAGGGGGTGATGAACTGGTCGATGGAGAGGGG
GTTAGCAGTAGTGGGAGCAGGAGTGGCAAGGGCACTCGAACGAAGCTGCT
GTACGTCACGCCGGAGATGCTGGCGAGAAACGGCAAGCTGGCTTCCGCGC
TTGAGGCTTTGTCCGACAGGTTAGGTGGCAACGGGGGGTAGGACGGAAGG
GGACACAGTTAGCTGATTTATAACTCTGAGCCTCATGTCATACATTTCGT
TGTACCCGCGTTGAGATTATGCGGGTGACTTTAGTCTGCAGTTGTGTACA
ACATGGAATCCACAAGAGGGAGGGGGGGGGGTCCTCATCTACAAGCCAAC
CCCCTGCTTTTCACCTTAACGAAGTACATGGTACTATCAGTACCGTTAAT
CCGTTTGTACACATGATGCAGTAATGCTACTCACTGCGGTTTATCAGGGT
GATACCAGCCACTAGAGTAGTCAATCCTTTGCGATGCTAAGCTTCGCCAA
CGCGATTCTGCCATTTTTTTTTTTTTGGCGGGCGGGGGGGGGGGCATACT
GGCTAAACCGAATGTTGCATATTTGGCAGGCGGGATTGTATACTCTTTAA
CAAAGTACATGGTACTATCAGTACCGTTAATCCGTTTGTATGCATGATGT
AGTAATGCTGCTTACTGCGGTTTACCAGGGTGACGCCAGCCACTAGAGTA
GTCAATCCTTTGCGATGCTAAGCTTGGCCAACCCGATTCTGCCACTTTTT
TTTTTTTTTTTTGGTGGGGGCATGCTCGCCGAACCGAATGTTGCACATTT
GGCAGGCGGGATTGTATATTCCAAGTACCGCACAGGAGTTTAATGTTTCT
CGCCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GATGGGATACACTTGAGAGTATAATCTGCTCATGTACGAACGAACTCCTG
ATGGAGTATGGTCAGGTCATGAGTGTTGATCGTTGTTCTTGAGAAATAAC
AACTCTTCATCAGTTCAGCAGCAGACCTCCCGTAGGGTGTGACATCTCCG
ACCTAGGTCAGCAGGCTCACAGGATATACCATACTAGTGGACAGGTCACG
TCTACGCGCCCGTCACAGCGACTACGTCGACGATGTTGCGGTATCTGAAA
TAGCCCACGCACGCACGGACTCGCTGCGCTCGCCGTGACTCGCTTCCGCT
CTTTGCTTACAATCAATAGTATAATCCCTCGCTGTTTTTACGCACAGACT
CACTGCGCCCTAGCCGTGACTCGCATGTAGACACATTGCCGAGGAACAGC
GTTGCAAGCTTCGACAGATGTCGTGTGACGGCAGAAATGCGTGCAGGAAA
CGTTCAACATTGATCCACAGACACATTTTTTTTTTTTCTTCTGGAAACGA
AACTTTCGGGGATACCTATCATCATGGGAGATGCAGTTGTGGGGAACTTA
GAAGCTCGGAGGAATCGTGAGCGCTGATATATGCAACTATTCTGGATGGG
AGGCTACATGTACCAACGGTTTTTTAATGGTGCGCTTGTTCACGGGGTTA
TGCTCTACCAACATGTATTCACACGCTATTTATTCAGCGCCAGGCTGGCA
TCTCCCACATAATACCCTCGTGCAGCAGCACCTTCTTATGTACAAAACGT
TGTGCCTACTCCAGTATGCATGCTGCGTGTGGACGGTAGCCTCTATGATA
GCCGCCACGATCTATTCATCGGTTACTCGCACGGAAGTGATGAAATACTA
CCAAGCACACCCACTGTTGGGATGTAATAAAAAAAAAAAAAAAACGCAGA
GAAAATCCATCGCAATTTTATATCCGCGAGGGCCTTCTGAGACCCATCTA
ATTCACTGAACGGGTATTACAGAGTGATTAGATGTCGTTGGGTGTATGAA
AGATTCGTTTTTCAGAAATTACTTCGATATAGACTCGAAAATATGTTCCA
GAATGACGGTAACGATGACGGTGATGACGCCCCCCCCCCCCCTCGAGGTT
TGTTTAAAACTCGATTTGCTCGGGAGGTTTGACTCTGCAACTGTCGAAGA
GCGCGTCTAAATAATGACAGATATATCTCGATGATATCTTTCTTACTATT
AATACGCACTTTCGGGGCCACCAGCACTATGCGTCATCAGAGGGTTTTTA
CTGTAATTGATAGGGGTGGTTTATGTATGTCTTGGTGTATGGACAGGGGC
TTGGTGAGTCTACTTGCCGTTGACGAGGCGCACTGCGTTAGCTCGTGGGG
TCACGACTTTCGCCCGGCGTACTTGGAGCTGGGGGAGTTCCGCAAGAGGC
GTCTGCGTGGGGTGCCGTGCTTGGCGCTCACGGCTACAGCTACTGTTGCT
GTGAGTTGTTCTACTTTTAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig26789:165..2635+

>mRNA_H-paniculata_contig26789.7325.1 ID=mRNA_H-paniculata_contig26789.7325.1|Name=mRNA_H-paniculata_contig26789.7325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig26789:165..2635+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTGCGGGGCCTGCGCGAAAAGGGGGTGGAAGCAGCATCTTTTACCTC
TGCCGCTGGTTCCAAGGCCCAAGCGGCCAAGGCCATGGCAGATCTCCTTG
ACGCCGGCAGGGGACGAAGAGGGGGTGATGAACTGGTCGATGGAGAGGGG
GTTAGCAGTAGTGGGAGCAGGAGTGGCAAGGGCACTCGAACGAAGCTGCT
GTACGTCACGCCGGAGATGCTGGCGAGAAACGGCAAGCTGGCTTCCGCGC
TTGAGGCTTTGTCCGACAGCAGCTGCGGGGCCTGCGCGAAAAGGGGGTGG
AAGCAGCATCTTTTACCTCTGCCGCTGGTTCCAAGGCCCAAGCGGCCAAG
GCCATGGCAGATCTCCTTGACGCCGGCAGGGGACGAAGAGGGGGTGATGA
ACTGGTCGATGGAGAGGGGGTTAGCAGTAGTGGGAGCAGGAGTGGCAAGG
GCACTCGAACGAAGCTGCTGTACGTCACGCCGGAGATGCTGGCGAGAAAC
GGCAAGCTGGCTTCCGCGCTTGAGGCTTTGTCCGACAGGGGCTTGGTGAG
TCTACTTGCCGTTGACGAGGCGCACTGCGTTAGCTCGTGGGGTCACGACT
TTCGCCCGGCGTACTTGGAGCTGGGGGAGTTCCGCAAGAGGCGTCTGCGT
GGGGTGCCGTGCTTGGCGCTCACGGCTACAGCTACTGTTGCTGTGAGTTG
TTCTACTTTTAAAGGGCTTGGTGAGTCTACTTGCCGTTGACGAGGCGCAC
TGCGTTAGCTCGTGGGGTCACGACTTTCGCCCGGCGTACTTGGAGCTGGG
GGAGTTCCGCAAGAGGCGTCTGCGTGGGGTGCCGTGCTTGGCGCTCACGG
CTACAGCTACTGTTGCTGTGAGTTGTTCTACTTTTAAA
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