mRNA_H-paniculata_contig26783.7324.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE) HSP 1 Score: 145 bits (366), Expect = 9.720e-38 Identity = 72/215 (33.49%), Postives = 118/215 (54.88%), Query Frame = 1
Query: 7 MTTQYKGLVQTGTPNR-ENPPDNNRPIYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICIE-----------------DMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
M + G +TGT + + P+ + I S W++ WKT+ G++ K R++ARG Q+ G+D+ +F+ S A+IK AVA +G HW++ Q+ I KL+E+ C+ +YGL Q+ R W A L E +EQC DPC+FR+++D V +LI+I+VDD++++ + ++L+ +N+ F LGE WY G
Sbjct: 1 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATEMGKKLAHWDVKQAYIHAKLKEETCLRFPEGYGNMSGKVVKVERALYGLKQSGREWGFEAAGALIENGYEQCRVDPCVFRKVVDGEVVSLIVIYVDDILVVADEGEREELFASLNKKFPVESLGEYTWYDG 215
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5JJW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW4_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.800e-37 Identity = 76/198 (38.38%), Postives = 114/198 (57.58%), Query Frame = 1
Query: 7 MTTQYKGLVQTGTPNR-ENPPDNNRPIYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICIEDMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
M +++G + TGT + + P+ RP+ S W + WKT+ +G + K RLVARG Q+ +D + +P S A+IK AVAN G++ HW++ Q+ +YGL Q+ R W A+TL E FEQC DPC FR I+D+ V +I+I+VDD+++ GS E C+KL +N+ F +LGE W+ G
Sbjct: 204 MREEFEGHLGTGTFSFVDGAPEGRRPVSSQWCFSWKTNKEGKMDKFKARLVARGFLQIPNVDSFHSASPCPSSASIKLMFAVANEKGMNLNHWDVKQAE-----------RAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCCFREIVDEVVVMIIVIYVDDILVAGSDEDCEKLLASLNKQFPTKNLGECQWFDG 390
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5KEU9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU9_9PHAE) HSP 1 Score: 133 bits (334), Expect = 3.150e-34 Identity = 69/189 (36.51%), Postives = 105/189 (55.56%), Query Frame = 1
Query: 82 IYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICI-----------------EDMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
I S I+ WK D G T AK RLVARG+ Q + +D+ D +AP + ++++ AA+A L L H++I Q+ + +ED + + +YGL QASR W+ LL L FEQC+ D C+FR + V L+++HVDD++ +G+KE CD+ +D+ ++ LGEL WY G
Sbjct: 147 IKSKLIFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPNVASSSVRMLAALACELDLELCHFDIDQAFVRAPFKEDTFMRLPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRSVEGGEVVLLLVVHVDDIVAVGTKERCDQFGKDLGEYVPVKSLGELKWYSG 335
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE) HSP 1 Score: 137 bits (346), Expect = 4.900e-34 Identity = 72/217 (33.18%), Postives = 120/217 (55.30%), Query Frame = 1
Query: 1 KVMTTQYKGLVQTGTPNR-ENPPDNNRPIYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICIE-----------------DMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
+ + + G +TGT ++ E P+ + + + W++ +KTD G++T K RLVARG QV G DY + + ++++IK A A GL T H++I Q+ K++E++ + +YGL Q+ R W AN L + +EQC DPC+FR+I+D +V ++I+I+VDD+M +GS+E ++L + + LGE WY G
Sbjct: 753 EAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDG 969
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 137 bits (346), Expect = 5.080e-34 Identity = 72/217 (33.18%), Postives = 120/217 (55.30%), Query Frame = 1
Query: 1 KVMTTQYKGLVQTGTPNR-ENPPDNNRPIYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICIE-----------------DMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
+ + + G +TGT ++ E P+ + + + W++ +KTD G++T K RLVARG QV G DY + + ++++IK A A GL T H++I Q+ K++E++ + +YGL Q+ R W AN L + +EQC DPC+FR+I+D +V ++I+I+VDD+M +GS+E ++L + + LGE WY G
Sbjct: 1306 EAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDG 1522
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE) HSP 1 Score: 135 bits (340), Expect = 1.610e-33 Identity = 71/189 (37.57%), Postives = 106/189 (56.08%), Query Frame = 1
Query: 82 IYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICI-----------------EDMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
I S ++ WK D G T AK RLVARG+ Q + +D+ D +APT + ++++ AA+A L L H++I Q+ + L E+I + + +YGL QASR W+ LL L FEQC+ D CLFR + V L+++HVDD+ +G+KE CD+ +D+ ++ LGEL WY G
Sbjct: 151 IKSKLLFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFAVGTKERCDQFGKDLGEYVPVKSLGELKWYSG 339
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE) HSP 1 Score: 135 bits (339), Expect = 4.420e-33 Identity = 76/211 (36.02%), Postives = 110/211 (52.13%), Query Frame = 1
Query: 16 QYKGLVQTGTPNRENPPDNNRPIYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICIE-----------------DMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
++ GL GT + I + W+Y WK D G AK RLVARG Q +G+D+ +TF+P SI +I+ AA+A L + H+ Q+ ++ +L+E + I +YGL QASRTWH L +K FE C D C+ R I V +++IHVDD+ IG K CD+ D+N++ ++LGEL WY G
Sbjct: 1391 EFFGLNAVGTFEEQR---GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDSCHFYAEQAFVQSELDEVVFIRLPPACGARSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAG 1598
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE) HSP 1 Score: 134 bits (336), Expect = 1.050e-32 Identity = 72/189 (38.10%), Postives = 103/189 (54.50%), Query Frame = 1
Query: 82 IYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICIE-----------------DMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
I + W+Y WK D G AK RLVARG Q +G+D+ +TF+P SI +I+ AA+A L H++ Q+ ++ +L+E + I +YGL QASRTWH L +K FE C D C+ R I V +++IHVDD+ IG K CD+ D+N++ ++LGEL WY G
Sbjct: 824 ISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRGLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPVSNLGELRWYAG 1012
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5K7Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y0_9PHAE) HSP 1 Score: 131 bits (330), Expect = 7.090e-32 Identity = 69/186 (37.10%), Postives = 104/186 (55.91%), Query Frame = 1
Query: 82 IYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICI-----------------EDMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNW 588
I S I+ WK D G T AK RLVARG+ Q + +D+ D +APT + ++++ AA+A L L H++I Q+ + L+EDI + + +YGL QASR W+ LL L FEQC+ D C+F + V L+++HVDD+ +G+KE CD+ +D+ ++ LGEL W
Sbjct: 1461 IKSKLIFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLKEDIFMRLPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFHLVEGGEVVLLLVVHVDDIFAVGTKERCDQFGKDLGEYVPVKSLGELKW 1646
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE) HSP 1 Score: 128 bits (322), Expect = 8.290e-31 Identity = 74/209 (35.41%), Postives = 107/209 (51.20%), Query Frame = 1
Query: 16 QYKGLVQTGTPNRENPPDNNRPIYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICIE-----------------DMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWY 591
++ GL GT I + W+Y WK D G AK RLVARG Q +G+D+ +TF+P SI +I+ AA+A L ++ Q+ ++ +L+E + I +YGL QASRTWH L +K FE C D C+ R I V +++IHVDD+ IG K CD+ D+N++ ++LGEL WY
Sbjct: 1273 EFFGLNAVGTFEERG----TNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCPFDAQQAFVQSELDEIVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWY 1477 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26783.7324.1 >prot_H-paniculata_contig26783.7324.1 ID=prot_H-paniculata_contig26783.7324.1|Name=mRNA_H-paniculata_contig26783.7324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp MTTQYKGLVQTGTPNRENPPDNNRPIYSMWIYKWKTDLDGVVTGAKVRLVback to top mRNA from alignment at H-paniculata_contig26783:2099..2775- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26783.7324.1 ID=mRNA_H-paniculata_contig26783.7324.1|Name=mRNA_H-paniculata_contig26783.7324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=677bp|location=Sequence derived from alignment at H-paniculata_contig26783:2099..2775- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26783:2099..2775- >mRNA_H-paniculata_contig26783.7324.1 ID=mRNA_H-paniculata_contig26783.7324.1|Name=mRNA_H-paniculata_contig26783.7324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig26783:2099..2775- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |