mRNA_H-paniculata_contig2678.7322.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2678.7322.1
Unique NamemRNA_H-paniculata_contig2678.7322.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2678.7322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2678contigH-paniculata_contig2678:8156..9096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size244
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2678.7322.1prot_H-paniculata_contig2678.7322.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2678 8233..9096 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.5868287-UTR-H-paniculata_contig2678:8155..82321622929803.5868287-UTR-H-paniculata_contig2678:8155..8232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2678 8156..8232 +
1691481017.9827182-UTR-H-paniculata_contig2678:8155..82321691481017.9827182-UTR-H-paniculata_contig2678:8155..8232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2678 8156..8232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.601168-CDS-H-paniculata_contig2678:8232..83351622929803.601168-CDS-H-paniculata_contig2678:8232..8335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2678 8233..8335 +
1691481017.9933412-CDS-H-paniculata_contig2678:8232..83351691481017.9933412-CDS-H-paniculata_contig2678:8232..8335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2678 8233..8335 +
1622929803.614508-CDS-H-paniculata_contig2678:9034..90961622929803.614508-CDS-H-paniculata_contig2678:9034..9096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2678 9035..9096 +
1691481018.0036032-CDS-H-paniculata_contig2678:9034..90961691481018.0036032-CDS-H-paniculata_contig2678:9034..9096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2678 9035..9096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2678.7322.1

>prot_H-paniculata_contig2678.7322.1 ID=prot_H-paniculata_contig2678.7322.1|Name=mRNA_H-paniculata_contig2678.7322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MMVCGRPRLGACLFYFLLAVSVVVAPNMAGLVPPRTTVNFFYAHLSTREK
SLVFD
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mRNA from alignment at H-paniculata_contig2678:8156..9096+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2678.7322.1 ID=mRNA_H-paniculata_contig2678.7322.1|Name=mRNA_H-paniculata_contig2678.7322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=941bp|location=Sequence derived from alignment at H-paniculata_contig2678:8156..9096+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCCTCTAGGTGAGAGGTGTGTCTAGCACTCTGCGGCATCCACAATCAT
TGATGTTTACACACTCGCTGAACACAGATGATGGTTTGCGGGCGGCCGAG
GTTGGGTGCTTGTTTATTTTATTTCTTGTTAGCCGTCAGTGTCGTCGTCG
CTCCAAACATGGCGGGGTTGGTCCCACCACGTACGTCGTGCATTTTCGTT
GTTGTATGTATTTCGATGTACTTTGCTCAGTTGGGCTAATAGTGGTGGAT
CCAATGGCTCAGGTCACCACAAGTACCCTGTCTGTGGGTCTGGGATTTTT
CGCATGACAAGGTAGCTGTACTGGTGGTACTTGGCCTTGTTGTGAGAATA
GTACGTCAGAGTGATCGAATCCTTTATTTCAGGCGCGGATAATTAGCCAG
GTACCACGGTAACTGGTGTTTGCTCGCTTGAAATTTGACTTCGTCTGTCT
TGATCGGTGTGGTGGATGGCTGCGCGGTCGAGATTTATTTTTGTTTCAAT
GGCACGGCGTCGTCGCCTCCTCTCTTTGAGTCGAGAGCAGGCAACACATC
ATACTAGAAGTGGACGTCTCTTTGTGGTGGCTTGAGCCCATAGTAGATAT
ATGAGTTGTCTTCTTGAAGGTTATGTTGTGTTCTCGATGAGATGGGGTTT
TTGTGCCGAAGATCCCACGCATGCCACGGATGACAGGCGGGGTTTCAGTC
CATGTATATTCAATATATATAGACTCATCTCTGTTCCGTTCACCTGTTAT
CGCTTGTCAAATCCCTGCCCACTTGATAAAAATTTTAGTCAGTCCTGATT
CCTGATCTCATATTGCATACTGGTGGACTCAAACGTACGAACACGTCCCT
TCGTAAAACAAATAATCAACTTGCGACAGGCACCACCGTTAACTTCTTCT
ACGCACACCTCTCAACACGGGAGAAGAGCCTGGTTTTTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2678:8156..9096+

>mRNA_H-paniculata_contig2678.7322.1 ID=mRNA_H-paniculata_contig2678.7322.1|Name=mRNA_H-paniculata_contig2678.7322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig2678:8156..9096+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGTTTGCGGGCGGCCGAGGTTGGGTGCTTGTTTATTTTATTTCTT
GTTAGCCGTCAGTGTCGTCGTCGCTCCAAACATGGCGGGGTTGGTCCCAC
CACATGATGGTTTGCGGGCGGCCGAGGTTGGGTGCTTGTTTATTTTATTT
CTTGTTAGCCGTCAGTGTCGTCGTCGCTCCAAACATGGCGGGGTTGGTCC
CACCACGCACCACCGTTAACTTCTTCTACGCACACCTCTCAACACGGGAG
AAGAGCCTGGTTTTTGACGCACCACCGTTAACTTCTTCTACGCACACCTC
TCAACACGGGAGAAGAGCCTGGTTTTTGAC
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