mRNA_H-paniculata_contig26777.7321.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26777.7321.1
Unique NamemRNA_H-paniculata_contig26777.7321.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26777.7321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26777contigH-paniculata_contig26777:4..2720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size202
Cds size102
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26777.7321.1prot_H-paniculata_contig26777.7321.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26777 4..2622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.530679-CDS-H-paniculata_contig26777:3..431622929803.530679-CDS-H-paniculata_contig26777:3..43Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26777 4..43 -
1691481017.9501426-CDS-H-paniculata_contig26777:3..431691481017.9501426-CDS-H-paniculata_contig26777:3..43Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26777 4..43 -
1622929803.5437844-CDS-H-paniculata_contig26777:2560..26221622929803.5437844-CDS-H-paniculata_contig26777:2560..2622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26777 2561..2622 -
1691481017.9613497-CDS-H-paniculata_contig26777:2560..26221691481017.9613497-CDS-H-paniculata_contig26777:2560..2622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26777 2561..2622 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.554376-UTR-H-paniculata_contig26777:2622..27201622929803.554376-UTR-H-paniculata_contig26777:2622..2720Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26777 2623..2720 -
1691481017.9720228-UTR-H-paniculata_contig26777:2622..27201691481017.9720228-UTR-H-paniculata_contig26777:2622..2720Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26777 2623..2720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26777.7321.1

>prot_H-paniculata_contig26777.7321.1 ID=prot_H-paniculata_contig26777.7321.1|Name=mRNA_H-paniculata_contig26777.7321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=34bp
MTMMLRAHSAWGRWRVTSDESFRVLARRRTDEGR
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mRNA from alignment at H-paniculata_contig26777:4..2720-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26777.7321.1 ID=mRNA_H-paniculata_contig26777.7321.1|Name=mRNA_H-paniculata_contig26777.7321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2717bp|location=Sequence derived from alignment at H-paniculata_contig26777:4..2720- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCGGGAAGCAAAACGGGTTTGCGAATCGACAGCAATTCCACCGCGT
TGACGACAACATCCACTGCGCAACCTGGCAGGAAAAACGTGTCGTTTGAT
GACGATGATGCTCAGAGCACATTCTGCGTGGGGCCGGTGGAGAGTCACAT
CAGATGAGAGGTAAATATGCAAACCGGAAGGTTTGTTCTGCCAAAGCGCG
AATGTATGGAAATCAATAAAAATATACAGCCCCGTACACCCCCTTGCTAG
TCATACTGCTTTGGAGTAGTACACAAAATATTAGGAAAAGAAGGGTTAAC
TTTCGATGGAAGTTTCGAATTTTATGTTGTTTCGTTTTTGTTTTTGTTTT
AAAAAATTCATGTATAAAGCGGAACGTGGTAATTTTCGACGTAATGTTCG
AATCTGCAGATGCTATTACGTTCCGATTTTTTATTTTTTTGTCGAGTGTC
TCGACCAAGCAGCTTTTTTGTCTTTAGCTTTTAGAGCAAGAAACTGATTC
GTCAGTTTAGATCGTTGTCTTGATCAATCGACCATATTTATATACACAAA
AAGCTCAGAGTTTTTTTTCATTATTAAAACAAATATTTTTTCAGCTCCCC
TAGCTACATGTAGCCAGTTGTATTCTCTGGATAATAACCAGTACGATATG
AATAAAAAGAAGGAAAAATCCCCAAAAGAATTGAAGGGCTCCAGGCCCTA
CACATCGCATCCGCATCACACGGACCATCAACAGCACGCGCGAAGCTCCC
TCGCCACCCGTCTTGAACATGGTGAAACGTGAAATCACTTTGGCAGTGAT
CCAAACTAGAATCTATATGCCCTCCTCGGCAGCAAGCAGCATACACCTGG
AGAGAATGTGTAGCACGCAAGGGTTCGAGCGCATGACGCATGACACACGT
TCTGTGAGCTGTCAGACAAGAGACTGAACGTCGAACATGGTTAGCGATCT
TACGAAAAGTGCCAACAGGGAACGGTTCGGAAGGGTTTCCCCTGTCGCAG
GCTGTTGTGCGCCCTTCACCCTACCCCGCCCCGTCCATCATGCAGATCCT
CTTTTCGGTTGAGTGGTGAAGTGACGTGTTGATTCATGCTACTGACACAT
CCAGATACGCACCATGTCTACAGTCGTACAGTGACAATATTCGTACGCTA
TAGTATTTTACAGCAAACTAGTAGTGTAAACATGGCTACGCCTGTGCAGT
TCGTGCATGACCTCAACCCGCGGACACGCTATGCTCGCGGTGGGGGCTTG
CGTAGCAAACGACACTGCTCGCCGCGCTTGCAGTATCTCGTTATGCTCGT
ACGGAGATTCGATATTCAGGAGTTACTTGAGAACAAAGTCGAAAATTTGG
TCCGAATCTACGGCGAGGATGACGATAACAACTGCCACCTTTTAGTTCTG
AATAACACAGAATTACGCGGAGCATTTGGGACGAAAACTAGAAGGAAAAG
ACTAAGCTTCGCGTGAGTTTCACAATGTACGGGCACATGAAATAGTGCAA
GAGATTGGTTTTTCAGGAGGTACTTGAGAACAGATTCGAAAATATGTTCC
GAATGTACGACGAGGATGATGATGATAGCCAACGCCTTTAGTAATGAATA
ACATATGATTACACGGGGCAGTTGTGATTTTTTTTCTTCGAAAAACCGAG
AAGAGCAGTCGCGTGAATTCCAGATGGTACGGATACATGAAAATAGTGAA
GTGTTGACTCCCTGTTTTTTCCTTTCATCATAATTTCATTTGGAACGGTC
GTAGATGGCCCGGGGCACACAGAAAACTGCTAAACATGCTCATCATGCTG
AGCCATCGAGTCAATTCATGTGTGTTTTTCTTCTGGTTTTTGTCACAAAT
GATCGAATCTAACAGGCACATTTATGTTTGTGTTTGTTGTGGTTCTGCTG
AGTGCTCGACGTATTATCTGGGCATATTTAAACTGTTGACGTATTCGAGC
CATCGAGCGATTTGATCGAATCCTGTCAACTAATAGACTGATCAAAGGAA
ACCGCATCACGTAGGCCATACTGTGTTGCATGGGGTCATGGGGACTAAGG
TGTTTTTTTTCGAGGCCAGAGAGCGGAAAACATACCAGAGTTTACACGGT
ATAATACAGAGCCGAAAATGCTTGGCCCCCGCTCCCGAATAAATCTCGAC
AGCGTGGACGGCATGACCTCCAAACGATACGGTTGTGCGAAGCGAGAGCT
TCCTTCGAAACGGTAAGCTAAGCTCTAGCTTCGCACAACCGTATCGTGTG
GAGGTTATGCTATCCACGTTGTCGAGATTTATTTGGAAGCAGGGGTCATG
CACTTTCGGCTCTGTATTATCCTGTGTAAACTATGGTAGGTGAGGGTACA
GCGAATGCTCGAGGCGTTGAACAGTGTGTTTTGATCATGTAGTGTTGTGT
AAGATCGATGTATACGATGGTGTTTTTGTCTTTTTGATGACCCAACGAGT
GTGAGATTCTTTGGGCATTTTTTTGTTGGGGGAAGACTATGTCATGCGTC
AGAAATTTCTGGAAGGCGATCAGCTAACGATGGCACAACTGCACCGCGCA
TACCAGCTCCTTGTTGGTGCTTGTGTCAGTAATGTGACGGCGTGTACAAC
CACGCTATTTTTGCTAGCGAATACCATGAACCTAATCCATGTACGGTTTC
CTCGTGTCTTCCCAACGCTGGCTATAGTTTCAGAGTTCTGGCGAGGAGGC
GGACTGATGAAGGGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig26777:4..2720-

>mRNA_H-paniculata_contig26777.7321.1 ID=mRNA_H-paniculata_contig26777.7321.1|Name=mRNA_H-paniculata_contig26777.7321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=204bp|location=Sequence derived from alignment at H-paniculata_contig26777:4..2720- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGATGATGCTCAGAGCACATTCTGCGTGGGGCCGGTGGAGAGTCAC
ATCAGATGAGAGATGACGATGATGCTCAGAGCACATTCTGCGTGGGGCCG
GTGGAGAGTCACATCAGATGAGAGTTTCAGAGTTCTGGCGAGGAGGCGGA
CTGATGAAGGGAGATTTCAGAGTTCTGGCGAGGAGGCGGACTGATGAAGG
GAGA
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