mRNA_H-paniculata_contig2677.7318.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2677.7318.1
Unique NamemRNA_H-paniculata_contig2677.7318.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2677.7318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2677contigH-paniculata_contig2677:7513..8646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size410
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2677.7318.1prot_H-paniculata_contig2677.7318.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2677 7513..7991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.3338108-CDS-H-paniculata_contig2677:7512..77421622929803.3338108-CDS-H-paniculata_contig2677:7512..7742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2677 7513..7742 -
1691481017.816497-CDS-H-paniculata_contig2677:7512..77421691481017.816497-CDS-H-paniculata_contig2677:7512..7742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2677 7513..7742 -
1622929803.3459058-CDS-H-paniculata_contig2677:7942..79911622929803.3459058-CDS-H-paniculata_contig2677:7942..7991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2677 7943..7991 -
1691481017.8259776-CDS-H-paniculata_contig2677:7942..79911691481017.8259776-CDS-H-paniculata_contig2677:7942..7991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2677 7943..7991 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.3590083-UTR-H-paniculata_contig2677:7991..80851622929803.3590083-UTR-H-paniculata_contig2677:7991..8085Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2677 7992..8085 -
1691481017.8357358-UTR-H-paniculata_contig2677:7991..80851691481017.8357358-UTR-H-paniculata_contig2677:7991..8085Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2677 7992..8085 -
1622929803.3714294-UTR-H-paniculata_contig2677:8611..86461622929803.3714294-UTR-H-paniculata_contig2677:8611..8646Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2677 8612..8646 -
1691481017.844854-UTR-H-paniculata_contig2677:8611..86461691481017.844854-UTR-H-paniculata_contig2677:8611..8646Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2677 8612..8646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2677.7318.1

>prot_H-paniculata_contig2677.7318.1 ID=prot_H-paniculata_contig2677.7318.1|Name=mRNA_H-paniculata_contig2677.7318.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MTRRERRGRDRKSQVEEPDAAPSMPTTARGERVQPIVDARLGSRTRQASR
TVASSTDHALAVSRVVCSQGASSPPSPPRGGEGAGVTSPRHSS
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mRNA from alignment at H-paniculata_contig2677:7513..8646-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2677.7318.1 ID=mRNA_H-paniculata_contig2677.7318.1|Name=mRNA_H-paniculata_contig2677.7318.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1134bp|location=Sequence derived from alignment at H-paniculata_contig2677:7513..8646- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGTGGGCACAGTACCCAGGCAACAAGAACTCAGGTGTGTTAGGAGTGA
ATATGGGTATGTATTGGTAAAAATTTGGCGCGGAAAAATGGGTGGGAGAC
GAAAAATTTAGAAGTTTGTCGCGGCTTGAGTTGCTCGTCAGCAAGGTCGC
CAACTCGCTGCACTGGCGCTGCAGAGAGTGCTGCGCTCGCTGTATGGCAT
GAACCAAAAAAATAAGGGGATAGCTGCACTGTGGGAATTATGAGCTTTGC
GTTGCAAAAGGTTCTGGTCCATTGCATGTATTGGCCTAAATTAGCGAGTC
ACATGAAGTGAAATGTTTTTGAATTAGCGGAGTAACTGAAGCAGCTGTGT
ACCTTACTATCTGTAAAGCCCATCCCAACCAACAACCTGTAGAGCTGGAG
AGTACAATATAATACTGCACTTTGCTGTACCACTAACTGCCGAAGCAGTA
CAGATCGCAGGGGGTGGGTTACACTGGGTAGACAAACGCCATTCTCATCG
CATCAAATGTTAGCGCTAATAACTTACAGACCAGCGCTTCAAACCATAAT
CCTCACGACAGGGTTAGGGTTAGACAACTGTGGTAAAATTAGATCACCAG
AACTGCGGGAGATTCATGCCCCGCCACATCTCAGTGAGTCAGCGACGGCT
AGATTATGACGCGCAGGGAACGCCGAGGGCGAGACCGCAAAAGTCAAGTT
GAAGGTGAGGACTGAATGCATAGTAATTTCGTGTGGCTAGGAATTGTCCT
CGCACGACTCTTGGAAATTTTGTGGCAAGGCTGCCTGCATGTAGCCTGGG
CTTGACCCGATCGACGGAGATACCCACAGTTGTTCAGAGTTTCACGACTG
ACGCGGTGGGCCGCTATTCACACCCGCCTATCGTTGCTCTGACATTTTCC
GCAGAACCCGATGCTGCTCCATCGATGCCAACAACAGCTCGCGGCGAGCG
GGTCCAACCGATAGTCGATGCCCGACTAGGCTCGCGGACGAGGCAAGCTT
CGCGGACAGTGGCATCCTCGACGGATCATGCTCTGGCTGTGTCGAGGGTG
GTGTGCAGTCAAGGGGCATCATCTCCTCCGTCGCCGCCCAGGGGGGGGGA
AGGGGCAGGGGTAACTTCGCCTAGACACAGCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2677:7513..8646-

>mRNA_H-paniculata_contig2677.7318.1 ID=mRNA_H-paniculata_contig2677.7318.1|Name=mRNA_H-paniculata_contig2677.7318.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig2677:7513..8646- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCGCAGGGAACGCCGAGGGCGAGACCGCAAAAGTCAAGTTGAAGA
TGACGCGCAGGGAACGCCGAGGGCGAGACCGCAAAAGTCAAGTTGAAGAA
CCCGATGCTGCTCCATCGATGCCAACAACAGCTCGCGGCGAGCGGGTCCA
ACCGATAGTCGATGCCCGACTAGGCTCGCGGACGAGGCAAGCTTCGCGGA
CAGTGGCATCCTCGACGGATCATGCTCTGGCTGTGTCGAGGGTGGTGTGC
AGTCAAGGGGCATCATCTCCTCCGTCGCCGCCCAGGGGGGGGGAAGGGGC
AGGGGTAACTTCGCCTAGACACAGCAGCAACCCGATGCTGCTCCATCGAT
GCCAACAACAGCTCGCGGCGAGCGGGTCCAACCGATAGTCGATGCCCGAC
TAGGCTCGCGGACGAGGCAAGCTTCGCGGACAGTGGCATCCTCGACGGAT
CATGCTCTGGCTGTGTCGAGGGTGGTGTGCAGTCAAGGGGCATCATCTCC
TCCGTCGCCGCCCAGGGGGGGGGAAGGGGCAGGGGTAACTTCGCCTAGAC
ACAGCAGC
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