mRNA_H-paniculata_contig26743.7315.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26743.7315.1 vs. uniprot
Match: D8LQE4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE4_ECTSI) HSP 1 Score: 176 bits (446), Expect = 6.860e-49 Identity = 89/112 (79.46%), Postives = 97/112 (86.61%), Query Frame = 1
Query: 7 QADALLDSGSGVPSWLTAMQGDDSWRRTLIELAREHRGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFNGVLKDTLARIPADDEVKIQEDVTDLKRMCCSTAYMFMYSQ 342
+ D LLDS +P+WLTAMQ D WRRTLIELAREHR SALLRFVLKQLSD G+HREIA+VISETDLFSVFNGVLKD LARIPADDEV+ E + DLKRMCCST+YMFMYSQ
Sbjct: 455 KVDTLLDSS--MPAWLTAMQDDTGWRRTLIELAREHRASALLRFVLKQLSDMGYHREIASVISETDLFSVFNGVLKDALARIPADDEVQATEALADLKRMCCSTSYMFMYSQ 564
BLAST of mRNA_H-paniculata_contig26743.7315.1 vs. uniprot
Match: A0A2D4C7R7_PYTIN (Negative elongation factor, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C7R7_PYTIN) HSP 1 Score: 85.5 bits (210), Expect = 4.550e-17 Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 19 LLDSGSGVPSWLTAMQGDDSWRRTLIELAREHRGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFNGVLKDTLARIPADDEVKIQEDVTDLKRMCCSTAYMFMYSQ 342
+L P WL+ M D R LIELA +H+ + ++++S GHH+E+A++ + FSVFNG+L D RIP + QED+ L+++CC +AY F+Y++
Sbjct: 392 VLSGSETEPQWLSDMLSDRKSRLMLIELAEKHK------YAVRRISGAGHHKELASIATANAFFSVFNGILLDAFCRIPFSSDDDAQEDLAALQKICCHSAYSFVYAE 493
BLAST of mRNA_H-paniculata_contig26743.7315.1 vs. uniprot
Match: A0A7S2XIX2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XIX2_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 2.170e-16 Identity = 46/121 (38.02%), Postives = 70/121 (57.85%), Query Frame = 1
Query: 13 DALLDSGSGVPSWLTAMQGDDSWRRTLIELAREHRGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFNGVLKDTLARIPA------------DDEVKIQEDVTDLKRMCCSTAYMFMYS 339
D +L+ ++L M D WRR LI+L+ H+ SALL + L+ +S +GHHREIA I+++D FSVFNG+L L+ I D V ++ + DL+R C ST+Y ++Y+
Sbjct: 405 DNILNLSKAEAAFLEEMIDSDEWRRLLIDLSATHKDSALLMYCLQSISKKGHHREIARRINQSDYFSVFNGMLASELSVIGKIAVSGMPGSSGIDTVVGMEGLIDDLRRTCTSTSYTYLYA 525
BLAST of mRNA_H-paniculata_contig26743.7315.1 vs. uniprot
Match: A0A1Z5JEL4_FISSO (Negative elongation factor C/D n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEL4_FISSO) HSP 1 Score: 82.0 bits (201), Expect = 7.450e-16 Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 1
Query: 13 DALLDSGSGVPSWLTAMQGDDSWRRTLIELAREHRGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFNGVLKDTL---------ARIPADDEVKIQEDVTDLKRMCCSTAYMFMYS 339
D +L+ ++L M WR+ LI+L+ H+ SA+L + L+ +S RGHHREIA ++++D F+VFN +L+ L A V++ + V DL R CCST+Y ++YS
Sbjct: 317 DRILNLSKAEAAFLEEMMDSSRWRKLLIDLSAVHKDSAVLIYCLQAISKRGHHREIAKRVNQSDHFAVFNAMLQSELTIVGNVSVSAESDISSAVELDDLVDDLVRACCSTSYTYLYS 434
BLAST of mRNA_H-paniculata_contig26743.7315.1 vs. uniprot
Match: A0A4D9DB12_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DB12_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.620e-15 Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = 1
Query: 7 QADALLDSGSGVPSWLTAMQGDDSWRRTLIELAREHRGSALLR-FVLKQLSDRGHHREIAAVISETDLFSVFNGVLKDTLARIPADDEVKIQEDVTDLKRMCCSTAYMFMYSQ 342
+ADALL ++ M G WRRTL+E+ +H+ S LL + ++ LS GH+ E+A ++S D +SV GV+ + LA +P D V + +LKR+CCSTAY+ +SQ
Sbjct: 506 KADALLFGRKQDMVFIDDMMGYKRWRRTLMEIFAQHKESKLLGGYCMQHLSRTGHNTEMADLVSVEDYWSVARGVVTELLAEVPWADHVHLSRLSANLKRICCSTAYLHAFSQ 618
BLAST of mRNA_H-paniculata_contig26743.7315.1 vs. uniprot
Match: W7U1T4_9STRA (Th1-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1T4_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 3.440e-15 Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = 1
Query: 7 QADALLDSGSGVPSWLTAMQGDDSWRRTLIELAREHRGSALLR-FVLKQLSDRGHHREIAAVISETDLFSVFNGVLKDTLARIPADDEVKIQEDVTDLKRMCCSTAYMFMYSQ 342
+ADALL ++ M G WRRTL+E+ +H+ S LL + ++ LS GH+ E+A ++S D +SV GV+ + LA +P D V + +LKR+CCSTAY+ +SQ
Sbjct: 46 KADALLFGRKQDMVFIDDMMGYRRWRRTLMEIFAQHKESKLLGGYCMQHLSRTGHNTEMADLVSVEDYWSVARGVVTELLAEVPWADHVHLSRLSANLKRICCSTAYLHAFSQ 158
BLAST of mRNA_H-paniculata_contig26743.7315.1 vs. uniprot
Match: A0A7R9VET2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VET2_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 9.890e-15 Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 1
Query: 73 DSWRRTLIELAREHRGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFNGVLKDTLARIP-------------ADDEVKIQEDVTDLKRMCCSTAY 324
D WRR LI+L+ H+ SA+L + L+ +S RGHHREIA I+++D F VFN +L L + + V I + VTDL+R C ST+Y
Sbjct: 4 DRWRRLLIDLSASHKDSAVLMYCLRSISKRGHHREIARRINQSDYFGVFNSMLASELTFLGKMAVGGDGSEDAGSGGSVGIDDVVTDLRRTCTSTSY 100
BLAST of mRNA_H-paniculata_contig26743.7315.1 vs. uniprot
Match: A0A7S1ZHF4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZHF4_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 4.100e-14 Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 1
Query: 13 DALLDSGSGVPSWLTAMQGDDSWRRTLIELAREHRGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFNGVLKDTLARIPA--------------DDEVKIQEDVTDLKRMCCSTAYMFMYS 339
D++L ++L M + WR+ LI+L+ H+ SALL + L+++S RGHHREIA I+++D F VFN +L L + D I + DLKR C ST+Y ++Y+
Sbjct: 256 DSILSLSKAEVAFLEEMFESNRWRKLLIDLSATHKDSALLMYCLQKISKRGHHREIAKRINQSDYFGVFNSMLAAELTVVGKLAVGGNGESGAKSDDGSTGIDSILADLKRTCSSTSYTYLYA 378
BLAST of mRNA_H-paniculata_contig26743.7315.1 vs. uniprot
Match: A0A7S1ZHQ3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZHQ3_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 4.220e-14 Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 1
Query: 13 DALLDSGSGVPSWLTAMQGDDSWRRTLIELAREHRGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFNGVLKDTLARIPA--------------DDEVKIQEDVTDLKRMCCSTAYMFMYS 339
D++L ++L M + WR+ LI+L+ H+ SALL + L+++S RGHHREIA I+++D F VFN +L L + D I + DLKR C ST+Y ++Y+
Sbjct: 256 DSILSLSKAEVAFLEEMFESNRWRKLLIDLSATHKDSALLMYCLQKISKRGHHREIAKRINQSDYFGVFNSMLAAELTVVGKLAVGGNGESGAKSDDGSTGIDSILADLKRTCSSTSYTYLYA 378
BLAST of mRNA_H-paniculata_contig26743.7315.1 vs. uniprot
Match: A0A7S4EQP7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EQP7_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 8.050e-14 Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 1
Query: 49 WLTAMQGDDSWRRTLIELAREHRGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFNGVLKDTLARIPA---------DDEVKIQEDVTDLKRMCCSTAYMFMY 336
+L M + WR+ LI+L+ + SALL + L+ +S RGHHREIA I++++ F VFN +L LA I D + + E V DL+R+C ST+Y ++Y
Sbjct: 671 FLEDMMNSNRWRKLLIDLSASKKDSALLMYCLQSISKRGHHREIARRINQSEHFPVFNAMLASELAVIGKISVSSCHDHDTSISLNELVGDLRRICTSTSYTYLY 775 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26743.7315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26743.7315.1 >prot_H-paniculata_contig26743.7315.1 ID=prot_H-paniculata_contig26743.7315.1|Name=mRNA_H-paniculata_contig26743.7315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp SSQADALLDSGSGVPSWLTAMQGDDSWRRTLIELAREHRGSALLRFVLKQback to top mRNA from alignment at H-paniculata_contig26743:1459..3250- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26743.7315.1 ID=mRNA_H-paniculata_contig26743.7315.1|Name=mRNA_H-paniculata_contig26743.7315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1792bp|location=Sequence derived from alignment at H-paniculata_contig26743:1459..3250- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26743:1459..3250- >mRNA_H-paniculata_contig26743.7315.1 ID=mRNA_H-paniculata_contig26743.7315.1|Name=mRNA_H-paniculata_contig26743.7315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig26743:1459..3250- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |