prot_H-paniculata_contig26738.7312.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig26738.7312.1
Unique Nameprot_H-paniculata_contig26738.7312.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length132
Homology
BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A1I9LVX1_9PHAE (50S ribosomal protein L12, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX1_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.770e-59
Identity = 109/131 (83.21%), Postives = 119/131 (90.84%), Query Frame = 0
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 131
            MT KISTLIDELKTLTLLEAA+LVKAIEETF+VD+S  GG +MM  AGA  SED+V  EEKTEFD+SLDEVPKDKKISILK++RS+TELGLKEAKEVVENTPKV+KEGLSK AAEE KKLLEEAGAVVTLK
Sbjct:    1 MTKKISTLIDELKTLTLLEAAELVKAIEETFDVDASPAGGGVMMMNAGATISEDNVSDEEKTEFDVSLDEVPKDKKISILKIIRSITELGLKEAKEVVENTPKVIKEGLSKTAAEETKKLLEEAGAVVTLK 131          
BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A8F0F840_9PHAE (Ribosomal protein L12 n=1 Tax=Postelsia palmaeformis TaxID=105414 RepID=A0A8F0F840_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 3.300e-57
Identity = 106/131 (80.92%), Postives = 121/131 (92.37%), Query Frame = 0
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 131
            MT+KISTLID LKTLTLLEAA+LVKAIEETF+VD+STGGG+MMMS  G+V S++   AEEKTEFD+SLDEVPKDKKI ILK+VRS+TELGLKEAKE+VENTPKV+KEGL+KAAAEE KK LE+AGAVVTLK
Sbjct:    1 MTEKISTLIDGLKTLTLLEAAELVKAIEETFDVDASTGGGVMMMSQGGSV-SDNGETAEEKTEFDISLDEVPKDKKIPILKIVRSLTELGLKEAKELVENTPKVIKEGLTKAAAEETKKTLEDAGAVVTLK 130          
BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: D1GJP6_FUCVE (50S ribosomal protein L12, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJP6_FUCVE)

HSP 1 Score: 177 bits (448), Expect = 6.770e-55
Identity = 105/133 (78.95%), Postives = 121/133 (90.98%), Query Frame = 0
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGG--GMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 131
            MT+KISTLI+ELKTLTLLEAA+LVK+IEETF+VD+ TGG  G+MMM+  GA+ +ED+   EEKTEFD+SL+EVPKDKKI+ILKVVRSVTELGLKEAKEVVENTPKV+KEGL K AAEEAKKLLE+AGAVV LK
Sbjct:    1 MTEKISTLIEELKTLTLLEAAELVKSIEETFDVDAPTGGASGVMMMN-PGAISTEDNNTVEEKTEFDVSLEEVPKDKKIAILKVVRSVTELGLKEAKEVVENTPKVIKEGLPKVAAEEAKKLLEDAGAVVILK 132          
BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A8E5XRI1_9PHAE (50S ribosomal protein L12, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI1_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 5.210e-54
Identity = 104/131 (79.39%), Postives = 114/131 (87.02%), Query Frame = 0
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 131
            M +KIS LI+ELK LTLLEAADLV AIEETFNVD+S GGG+MMM G     SED+   EEKTEFD+SLDEVPKDKKISILKVVR+VT+LGLKEAKEVVENTPK++KEGL K AAEEAK LLEEAGAVVTLK
Sbjct:    1 MNEKISPLIEELKNLTLLEAADLVTAIEETFNVDASAGGGVMMM-GTTTSPSEDAKPTEEKTEFDISLDEVPKDKKISILKVVRTVTQLGLKEAKEVVENTPKIVKEGLLKEAAEEAKTLLEEAGAVVTLK 130          
BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A8F0JYI3_9PHAE (Ribosomal protein L12 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYI3_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 3.310e-53
Identity = 106/133 (79.70%), Postives = 113/133 (84.96%), Query Frame = 0
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSED--SVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 131
            MT+KI TLIDELKTLTLLEAADLVKAIEETFNVD+STG G+M              S V EEKTEFDLSLDEVPKDKKISILKVVR+VTELGLKEAKEVVENTP++LKEGLSKAAAEEAK LLE+AGA VTLK
Sbjct:    1 MTEKILTLIDELKTLTLLEAADLVKAIEETFNVDASTGSGVMXXXXXXXXXXXXXXSEVVEEKTEFDLSLDEVPKDKKISILKVVRTVTELGLKEAKEVVENTPRILKEGLSKAAAEEAKTLLEDAGAKVTLK 133          
BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A8F0FB01_9PHAE (Ribosomal protein L12 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB01_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 4.730e-50
Identity = 101/131 (77.10%), Postives = 111/131 (84.73%), Query Frame = 0
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 131
            MT+KISTLI+ELKTLTLLEAA+LVKAIEETF+VD+S GG                  AEEKTEFD+SLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKV+K GL+K+AAEEAKKLLE+AGAVVTLK
Sbjct:    1 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGGXXXXXXXXXXXXXXX-XXAEEKTEFDVSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVIKAGLTKSAAEEAKKLLEDAGAVVTLK 130          
BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A6B7EZL5_9PHAE (50S ribosomal protein L12 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EZL5_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.980e-49
Identity = 98/131 (74.81%), Postives = 109/131 (83.21%), Query Frame = 0
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 131
            MT+KISTLIDELKTLTLLEAA+LVKAIEETF+VD+S G                    EEKTEF++SLDEVPKDKKISILKVVR+VTELGLKEAKEVVENTPKV++EGL+KAAAEE KKLLE+AGAVVTLK
Sbjct:    1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXXGEEKTEFNVSLDEVPKDKKISILKVVRAVTELGLKEAKEVVENTPKVIQEGLTKAAAEETKKLLEDAGAVVTLK 131          
BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A6G6D787_ECTSI (50S ribosomal protein L12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A6G6D787_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 3.870e-49
Identity = 98/131 (74.81%), Postives = 113/131 (86.26%), Query Frame = 0
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 131
            MT+KISTLIDELKTLTLLEAA+LVKAIEETF+VD+S+G               ++   EEKTEFD+SLDEVPKDKKISILK+VRS+TELGLKEAKEVVENTPKV++EGL+K+AAEEAKK+LEEAGAVVTLK
Sbjct:    1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASSGXXXXXXXXXXXXXXXNAS-GEEKTEFDVSLDEVPKDKKISILKIVRSLTELGLKEAKEVVENTPKVIQEGLTKSAAEEAKKVLEEAGAVVTLK 130          
BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: D1J716_ECTSI (50S ribosomal protein L12, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=D1J716_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 5.500e-49
Identity = 98/131 (74.81%), Postives = 112/131 (85.50%), Query Frame = 0
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 131
            MT+KISTLIDELKTLTLLEAA+LVKAIEETF+VD+S G               ++   EEKTEFD+SLDEVPKDKKISILK+VRS+TELGLKEAKEVVENTPKV++EGL+K+AAEEAKK+LEEAGAVVTLK
Sbjct:    1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXNAS-GEEKTEFDVSLDEVPKDKKISILKIVRSLTELGLKEAKEVVENTPKVIQEGLTKSAAEEAKKVLEEAGAVVTLK 130          
BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A5B9RE57_9PHAE (50S ribosomal protein L12, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A5B9RE57_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.570e-48
Identity = 99/131 (75.57%), Postives = 108/131 (82.44%), Query Frame = 0
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 131
            MT+KISTLIDELKTLTLLEAA+LVKAIEETF+VD+S G                   AEEKTEFD+SLDEVPKDKKI ILKVVRSVTELGLKEAKE+VENTPKV+KEGL+KAAAEE KK LE+AGAVVTLK
Sbjct:    1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXGEA-AEEKTEFDVSLDEVPKDKKIPILKVVRSVTELGLKEAKELVENTPKVIKEGLTKAAAEETKKTLEDAGAVVTLK 130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I9LVX1_9PHAE1.770e-5983.2150S ribosomal protein L12, chloroplastic n=1 Tax=P... [more]
A0A8F0F840_9PHAE3.300e-5780.92Ribosomal protein L12 n=1 Tax=Postelsia palmaeform... [more]
D1GJP6_FUCVE6.770e-5578.9550S ribosomal protein L12, chloroplastic n=3 Tax=F... [more]
A0A8E5XRI1_9PHAE5.210e-5479.3950S ribosomal protein L12, chloroplastic n=1 Tax=I... [more]
A0A8F0JYI3_9PHAE3.310e-5379.70Ribosomal protein L12 n=1 Tax=Protohalopteris sp. ... [more]
A0A8F0FB01_9PHAE4.730e-5077.10Ribosomal protein L12 n=1 Tax=Desmarestia aculeata... [more]
A0A6B7EZL5_9PHAE1.980e-4974.8150S ribosomal protein L12 n=1 Tax=Cladosiphon okam... [more]
A0A6G6D787_ECTSI3.870e-4974.8150S ribosomal protein L12 n=1 Tax=Ectocarpus silic... [more]
D1J716_ECTSI5.500e-4974.8150S ribosomal protein L12, chloroplastic n=6 Tax=P... [more]
A0A5B9RE57_9PHAE1.570e-4875.5750S ribosomal protein L12, chloroplastic n=28 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000206Ribosomal protein L7/L12TIGRFAMTIGR00855TIGR00855coord: 4..131
e-value: 3.1E-34
score: 116.1
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 1..131
score: 22.449
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 60..131
e-value: 1.3E-24
score: 88.0
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 59..131
IPR008932Ribosomal protein L7/L12, oligomerisationPFAMPF16320Ribosomal_L12_Ncoord: 4..49
e-value: 7.2E-14
score: 51.2
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 64..131
e-value: 1.1E-23
score: 83.3
IPR036235Ribosomal protein L7/L12, oligomerisation domain superfamilyGENE3D1.20.5.710coord: 4..59
e-value: 4.6E-10
score: 41.1
IPR036235Ribosomal protein L7/L12, oligomerisation domain superfamilySUPERFAMILY48300Ribosomal protein L7/12, oligomerisation (N-terminal) domaincoord: 4..65
NoneNo IPR availablePANTHERPTHR45987FAMILY NOT NAMEDcoord: 3..131
NoneNo IPR availablePRODOMPD001326coord: 65..103
e-value: 2.0E-9
score: 144.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26738contigH-paniculata_contig26738:2996..3391 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26738.7312.1mRNA_H-paniculata_contig26738.7312.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig26738 2996..3391 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig26738.7312.1 ID=prot_H-paniculata_contig26738.7312.1|Name=mRNA_H-paniculata_contig26738.7312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAV
KSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVEN
TPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000206Ribosomal_L7/12
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR008932Ribosomal_L7/L12_oligo
IPR013823Ribosomal_L7/L12_C
IPR036235Ribosomal_L7/L12_oligo_N_sf