mRNA_H-paniculata_contig26738.7312.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26738.7312.1
Unique NamemRNA_H-paniculata_contig26738.7312.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A1I9LVX1_9PHAE (50S ribosomal protein L12, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX1_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.770e-59
Identity = 109/131 (83.21%), Postives = 119/131 (90.84%), Query Frame = 1 
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 393
            MT KISTLIDELKTLTLLEAA+LVKAIEETF+VD+S  GG +MM  AGA  SED+V  EEKTEFD+SLDEVPKDKKISILK++RS+TELGLKEAKEVVENTPKV+KEGLSK AAEE KKLLEEAGAVVTLK
Sbjct:    1 MTKKISTLIDELKTLTLLEAAELVKAIEETFDVDASPAGGGVMMMNAGATISEDNVSDEEKTEFDVSLDEVPKDKKISILKIIRSITELGLKEAKEVVENTPKVIKEGLSKTAAEETKKLLEEAGAVVTLK 131
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BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A8F0F840_9PHAE (Ribosomal protein L12 n=1 Tax=Postelsia palmaeformis TaxID=105414 RepID=A0A8F0F840_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 3.300e-57
Identity = 106/131 (80.92%), Postives = 121/131 (92.37%), Query Frame = 1 
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 393
            MT+KISTLID LKTLTLLEAA+LVKAIEETF+VD+STGGG+MMMS  G+V S++   AEEKTEFD+SLDEVPKDKKI ILK+VRS+TELGLKEAKE+VENTPKV+KEGL+KAAAEE KK LE+AGAVVTLK
Sbjct:    1 MTEKISTLIDGLKTLTLLEAAELVKAIEETFDVDASTGGGVMMMSQGGSV-SDNGETAEEKTEFDISLDEVPKDKKIPILKIVRSLTELGLKEAKELVENTPKVIKEGLTKAAAEETKKTLEDAGAVVTLK 130
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BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: D1GJP6_FUCVE (50S ribosomal protein L12, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJP6_FUCVE)

HSP 1 Score: 177 bits (448), Expect = 6.770e-55
Identity = 105/133 (78.95%), Postives = 121/133 (90.98%), Query Frame = 1 
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGG--GMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 393
            MT+KISTLI+ELKTLTLLEAA+LVK+IEETF+VD+ TGG  G+MMM+  GA+ +ED+   EEKTEFD+SL+EVPKDKKI+ILKVVRSVTELGLKEAKEVVENTPKV+KEGL K AAEEAKKLLE+AGAVV LK
Sbjct:    1 MTEKISTLIEELKTLTLLEAAELVKSIEETFDVDAPTGGASGVMMMN-PGAISTEDNNTVEEKTEFDVSLEEVPKDKKIAILKVVRSVTELGLKEAKEVVENTPKVIKEGLPKVAAEEAKKLLEDAGAVVILK 132
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BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A8E5XRI1_9PHAE (50S ribosomal protein L12, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI1_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 5.210e-54
Identity = 104/131 (79.39%), Postives = 114/131 (87.02%), Query Frame = 1 
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 393
            M +KIS LI+ELK LTLLEAADLV AIEETFNVD+S GGG+MMM G     SED+   EEKTEFD+SLDEVPKDKKISILKVVR+VT+LGLKEAKEVVENTPK++KEGL K AAEEAK LLEEAGAVVTLK
Sbjct:    1 MNEKISPLIEELKNLTLLEAADLVTAIEETFNVDASAGGGVMMM-GTTTSPSEDAKPTEEKTEFDISLDEVPKDKKISILKVVRTVTQLGLKEAKEVVENTPKIVKEGLLKEAAEEAKTLLEEAGAVVTLK 130
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BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A8F0JYI3_9PHAE (Ribosomal protein L12 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYI3_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 3.310e-53
Identity = 106/133 (79.70%), Postives = 113/133 (84.96%), Query Frame = 1 
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSED--SVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 393
            MT+KI TLIDELKTLTLLEAADLVKAIEETFNVD+STG G+M              S V EEKTEFDLSLDEVPKDKKISILKVVR+VTELGLKEAKEVVENTP++LKEGLSKAAAEEAK LLE+AGA VTLK
Sbjct:    1 MTEKILTLIDELKTLTLLEAADLVKAIEETFNVDASTGSGVMXXXXXXXXXXXXXXSEVVEEKTEFDLSLDEVPKDKKISILKVVRTVTELGLKEAKEVVENTPRILKEGLSKAAAEEAKTLLEDAGAKVTLK 133
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BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A8F0FB01_9PHAE (Ribosomal protein L12 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB01_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 4.730e-50
Identity = 101/131 (77.10%), Postives = 111/131 (84.73%), Query Frame = 1 
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 393
            MT+KISTLI+ELKTLTLLEAA+LVKAIEETF+VD+S GG                  AEEKTEFD+SLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKV+K GL+K+AAEEAKKLLE+AGAVVTLK
Sbjct:    1 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGGXXXXXXXXXXXXXXX-XXAEEKTEFDVSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVIKAGLTKSAAEEAKKLLEDAGAVVTLK 130
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BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A6B7EZL5_9PHAE (50S ribosomal protein L12 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EZL5_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.980e-49
Identity = 98/131 (74.81%), Postives = 109/131 (83.21%), Query Frame = 1 
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 393
            MT+KISTLIDELKTLTLLEAA+LVKAIEETF+VD+S G                    EEKTEF++SLDEVPKDKKISILKVVR+VTELGLKEAKEVVENTPKV++EGL+KAAAEE KKLLE+AGAVVTLK
Sbjct:    1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXXGEEKTEFNVSLDEVPKDKKISILKVVRAVTELGLKEAKEVVENTPKVIQEGLTKAAAEETKKLLEDAGAVVTLK 131
[Close]
BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A6G6D787_ECTSI (50S ribosomal protein L12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A6G6D787_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 3.870e-49
Identity = 98/131 (74.81%), Postives = 113/131 (86.26%), Query Frame = 1 
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 393
            MT+KISTLIDELKTLTLLEAA+LVKAIEETF+VD+S+G               ++   EEKTEFD+SLDEVPKDKKISILK+VRS+TELGLKEAKEVVENTPKV++EGL+K+AAEEAKK+LEEAGAVVTLK
Sbjct:    1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASSGXXXXXXXXXXXXXXXNAS-GEEKTEFDVSLDEVPKDKKISILKIVRSLTELGLKEAKEVVENTPKVIQEGLTKSAAEEAKKVLEEAGAVVTLK 130
[Close]
BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: D1J716_ECTSI (50S ribosomal protein L12, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=D1J716_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 5.500e-49
Identity = 98/131 (74.81%), Postives = 112/131 (85.50%), Query Frame = 1 
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 393
            MT+KISTLIDELKTLTLLEAA+LVKAIEETF+VD+S G               ++   EEKTEFD+SLDEVPKDKKISILK+VRS+TELGLKEAKEVVENTPKV++EGL+K+AAEEAKK+LEEAGAVVTLK
Sbjct:    1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXNAS-GEEKTEFDVSLDEVPKDKKISILKIVRSLTELGLKEAKEVVENTPKVIQEGLTKSAAEEAKKVLEEAGAVVTLK 130
[Close]
BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Match: A0A5B9RE57_9PHAE (50S ribosomal protein L12, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A5B9RE57_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.570e-48
Identity = 99/131 (75.57%), Postives = 108/131 (82.44%), Query Frame = 1 
Query:    1 MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAVKSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK 393
            MT+KISTLIDELKTLTLLEAA+LVKAIEETF+VD+S G                   AEEKTEFD+SLDEVPKDKKI ILKVVRSVTELGLKEAKE+VENTPKV+KEGL+KAAAEE KK LE+AGAVVTLK
Sbjct:    1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXGEA-AEEKTEFDVSLDEVPKDKKIPILKVVRSVTELGLKEAKELVENTPKVIKEGLTKAAAEETKKTLEDAGAVVTLK 130
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26738.7312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I9LVX1_9PHAE1.770e-5983.2150S ribosomal protein L12, chloroplastic n=1 Tax=P... [more]
A0A8F0F840_9PHAE3.300e-5780.92Ribosomal protein L12 n=1 Tax=Postelsia palmaeform... [more]
D1GJP6_FUCVE6.770e-5578.9550S ribosomal protein L12, chloroplastic n=3 Tax=F... [more]
A0A8E5XRI1_9PHAE5.210e-5479.3950S ribosomal protein L12, chloroplastic n=1 Tax=I... [more]
A0A8F0JYI3_9PHAE3.310e-5379.70Ribosomal protein L12 n=1 Tax=Protohalopteris sp. ... [more]
A0A8F0FB01_9PHAE4.730e-5077.10Ribosomal protein L12 n=1 Tax=Desmarestia aculeata... [more]
A0A6B7EZL5_9PHAE1.980e-4974.8150S ribosomal protein L12 n=1 Tax=Cladosiphon okam... [more]
A0A6G6D787_ECTSI3.870e-4974.8150S ribosomal protein L12 n=1 Tax=Ectocarpus silic... [more]
D1J716_ECTSI5.500e-4974.8150S ribosomal protein L12, chloroplastic n=6 Tax=P... [more]
A0A5B9RE57_9PHAE1.570e-4875.5750S ribosomal protein L12, chloroplastic n=28 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26738contigH-paniculata_contig26738:2996..3391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.1
Seed ortholog evalue1.4e-39
Seed eggNOG ortholog2880.D1J716
Preferred namerpl12
KEGG koko:K02863,ko:K02935
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000311,GO:0000313,GO:0000315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009506,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009547,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0030054,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0034641,GO:0034645,GO:0042221,GO:0042651,GO:0042742,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055044,GO:0071704,GO:0098542,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0222@1,KOG1715@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size396
Cds size396
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.734988-CDS-H-paniculata_contig26738:2995..33911622929802.734988-CDS-H-paniculata_contig26738:2995..3391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26738 2996..3391 +
1691481017.5378933-CDS-H-paniculata_contig26738:2995..33911691481017.5378933-CDS-H-paniculata_contig26738:2995..3391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26738 2996..3391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26738.7312.1prot_H-paniculata_contig26738.7312.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26738 2996..3391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26738.7312.1

>prot_H-paniculata_contig26738.7312.1 ID=prot_H-paniculata_contig26738.7312.1|Name=mRNA_H-paniculata_contig26738.7312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MTDKISTLIDELKTLTLLEAADLVKAIEETFNVDSSTGGGMMMMSGAGAV
KSEDSVVAEEKTEFDLSLDEVPKDKKISILKVVRSVTELGLKEAKEVVEN
TPKVLKEGLSKAAAEEAKKLLEEAGAVVTLK*
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mRNA from alignment at H-paniculata_contig26738:2996..3391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26738.7312.1 ID=mRNA_H-paniculata_contig26738.7312.1|Name=mRNA_H-paniculata_contig26738.7312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at H-paniculata_contig26738:2996..3391+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGATAAAATCTCAACATTAATCGACGAATTAAAAACTTTAACATT
ATTAGAAGCGGCTGACTTAGTTAAAGCCATAGAAGAAACATTTAATGTTG
ATTCTTCAACTGGAGGTGGAATGATGATGATGAGTGGTGCTGGAGCTGTA
AAATCTGAAGATTCTGTTGTAGCAGAAGAAAAAACAGAATTTGATTTAAG
TTTAGATGAAGTTCCAAAAGATAAAAAGATCTCTATTCTAAAAGTCGTTA
GATCTGTAACTGAATTGGGATTAAAAGAAGCAAAAGAAGTTGTTGAAAAT
ACCCCTAAAGTCTTAAAGGAAGGATTAAGTAAAGCTGCTGCTGAAGAAGC
AAAAAAATTATTAGAAGAAGCAGGTGCAGTAGTAACTCTTAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig26738:2996..3391+

>mRNA_H-paniculata_contig26738.7312.1 ID=mRNA_H-paniculata_contig26738.7312.1|Name=mRNA_H-paniculata_contig26738.7312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig26738:2996..3391+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGATAAAATCTCAACATTAATCGACGAATTAAAAACTTTAACATT
ATTAGAAGCGGCTGACTTAGTTAAAGCCATAGAAGAAACATTTAATGTTG
ATTCTTCAACTGGAGGTGGAATGATGATGATGAGTGGTGCTGGAGCTGTA
AAATCTGAAGATTCTGTTGTAGCAGAAGAAAAAACAGAATTTGATTTAAG
TTTAGATGAAGTTCCAAAAGATAAAAAGATCTCTATTCTAAAAGTCGTTA
GATCTGTAACTGAATTGGGATTAAAAGAAGCAAAAGAAGTTGTTGAAAAT
ACCCCTAAAGTCTTAAAGGAAGGATTAAGTAAAGCTGCTGCTGAAGAAGC
AAAAAAATTATTAGAAGAAGCAGGTGCAGTAGTAACTCTTAAATAAATGA
CTGATAAAATCTCAACATTAATCGACGAATTAAAAACTTTAACATTATTA
GAAGCGGCTGACTTAGTTAAAGCCATAGAAGAAACATTTAATGTTGATTC
TTCAACTGGAGGTGGAATGATGATGATGAGTGGTGCTGGAGCTGTAAAAT
CTGAAGATTCTGTTGTAGCAGAAGAAAAAACAGAATTTGATTTAAGTTTA
GATGAAGTTCCAAAAGATAAAAAGATCTCTATTCTAAAAGTCGTTAGATC
TGTAACTGAATTGGGATTAAAAGAAGCAAAAGAAGTTGTTGAAAATACCC
CTAAAGTCTTAAAGGAAGGATTAAGTAAAGCTGCTGCTGAAGAAGCAAAA
AAATTATTAGAAGAAGCAGGTGCAGTAGTAACTCTTAAATAA
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