mRNA_H-paniculata_contig26738.7311.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26738.7311.1
Unique NamemRNA_H-paniculata_contig26738.7311.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig26738.7311.1 vs. uniprot
Match: A0A8F0F7E6_9PHAE (Ribosomal protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7E6_9PHAE)

HSP 1 Score: 355 bits (912), Expect = 2.220e-122
Identity = 178/206 (86.41%), Postives = 192/206 (93.20%), Query Frame = 3 
Query:   81 SNAKFTESIEAHISLSIDPKYSDQQLRSTLILPKGTGKIKRIAVLMPLEGIVXXXXXXIPQKYKDLADIVGSDDLIELITKGNLDFDILISTPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDIILTLEEFKKGKLEYRADKTGIVHLLIGKSDFTNLDLLDNLNAVYTSIENNKPPGVKGQYFKTFHLCSTMGPSVEIDINDLKN 698
            +NA+F ESIEAHISLSIDPKYSDQQLRSTLILPKGTGKIKRIAVLMPL+GI         Q+YK+LADI+GSDDLIELI KGN+DFDILISTPDMMPKLAKLGR+LGPKGLMPSPKAGTVTTDI LTLEEFK+GKLEYRADKTGIVHLLIGKSDFTN DLLDNL A+YTSIENNKPPGVKGQYFKTFHLCSTMGPS+EIDI++LK+
Sbjct:   33 ANARFVESIEAHISLSIDPKYSDQQLRSTLILPKGTGKIKRIAVLMPLDGIT--------QEYKELADIIGSDDLIELIAKGNIDFDILISTPDMMPKLAKLGRVLGPKGLMPSPKAGTVTTDIRLTLEEFKRGKLEYRADKTGIVHLLIGKSDFTNSDLLDNLTAIYTSIENNKPPGVKGQYFKTFHLCSTMGPSIEIDISELKS 230
[Close]
BLAST of mRNA_H-paniculata_contig26738.7311.1 vs. uniprot
Match: A0A0R6MAX7_UNDPI (50S ribosomal protein L1, chloroplastic n=33 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6MAX7_UNDPI)

HSP 1 Score: 340 bits (871), Expect = 3.890e-116
Identity = 171/205 (83.41%), Postives = 188/205 (91.71%), Query Frame = 3 
Query:   81 SNAKFTESIEAHISLSIDPKYSDQQLRSTLILPKGTGKIKRIAVLMPLEGIVXXXXXXIPQKYKDLADIVGSDDLIELITKGNLDFDILISTPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDIILTLEEFKKGKLEYRADKTGIVHLLIGKSDFTNLDLLDNLNAVYTSIENNKPPGVKGQYFKTFHLCSTMGPSVEIDINDLK 695
            +NAKF ES+EAHISLSIDPKYSDQQLRSTLILPKGTGK KRIAVLMPLE I          +YK+LADI+GSDDLIE+ITKG+++FDILI+TPDMMPKLAKLGRILGPKGLMPSPKAGTVTTD+ LTLEEFKKGKLEYRADKTGIVHLLIGKSDFT+ DLL+NL AVYTSIENNKPPGVKG+YFKTFH+CSTMGPS+EIDI+ LK
Sbjct:   33 ANAKFIESVEAHISLSIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLESITP--------EYKELADIIGSDDLIEIITKGDINFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVKLTLEEFKKGKLEYRADKTGIVHLLIGKSDFTDSDLLENLIAVYTSIENNKPPGVKGRYFKTFHICSTMGPSIEIDISTLK 229
[Close]
BLAST of mRNA_H-paniculata_contig26738.7311.1 vs. uniprot
Match: D1J715_ECTSI (50S ribosomal protein L1, chloroplastic n=3 Tax=Ectocarpales TaxID=2877 RepID=D1J715_ECTSI)

HSP 1 Score: 338 bits (866), Expect = 2.240e-115
Identity = 170/205 (82.93%), Postives = 187/205 (91.22%), Query Frame = 3 
Query:   81 SNAKFTESIEAHISLSIDPKYSDQQLRSTLILPKGTGKIKRIAVLMPLEGIVXXXXXXIPQKYKDLADIVGSDDLIELITKGNLDFDILISTPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDIILTLEEFKKGKLEYRADKTGIVHLLIGKSDFTNLDLLDNLNAVYTSIENNKPPGVKGQYFKTFHLCSTMGPSVEIDINDLK 695
            +NA F ES+EAHISL+IDPKYSDQQLRSTLILPKGTGK KRIAVLMPLE I          +YKDLADI+GSDDLIE ITKG+L+FDILI+TPDMMPKLAKLGRILGPKGLMPSPKAGTVTTD++LTLEEFKKGKLEYRADKTGIVHLLIGKS+FT+ DLL+NL AVY SIENNKPPGVKG+YFKTFH+CSTMGPS+EIDI+DLK
Sbjct:   33 ANANFIESVEAHISLAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLETIT--------SEYKDLADIIGSDDLIETITKGDLNFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVMLTLEEFKKGKLEYRADKTGIVHLLIGKSNFTDSDLLENLVAVYNSIENNKPPGVKGRYFKTFHICSTMGPSIEIDISDLK 229
[Close]
BLAST of mRNA_H-paniculata_contig26738.7311.1 vs. uniprot
Match: A0A8F0F9R0_9PHAE (Ribosomal protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9R0_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 5.260e-114
Identity = 170/205 (82.93%), Postives = 186/205 (90.73%), Query Frame = 3 
Query:   81 SNAKFTESIEAHISLSIDPKYSDQQLRSTLILPKGTGKIKRIAVLMPLEGIVXXXXXXIPQKYKDLADIVGSDDLIELITKGNLDFDILISTPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDIILTLEEFKKGKLEYRADKTGIVHLLIGKSDFTNLDLLDNLNAVYTSIENNKPPGVKGQYFKTFHLCSTMGPSVEIDINDLK 695
            +NA F ES+EAHISLSIDPKYSDQQLRSTLILPKGTGK KRIAVLMPLE I          +YK+LADIVGSDDLIE+ITKG+L+FDILI+TPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDI LTLEEFKKGKLEYRADKTGIVHLLIGKS+F + DLL+NL AVYTSIENNKPPGVKG+YFKTFH+CSTMGPS+EID++ LK
Sbjct:   33 ANANFVESVEAHISLSIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLETITP--------EYKELADIVGSDDLIEMITKGDLNFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDIKLTLEEFKKGKLEYRADKTGIVHLLIGKSNFADSDLLENLVAVYTSIENNKPPGVKGRYFKTFHICSTMGPSIEIDLSTLK 229
[Close]
BLAST of mRNA_H-paniculata_contig26738.7311.1 vs. uniprot
Match: A0A8F0F916_9PHAE (Ribosomal protein n=1 Tax=Postelsia palmaeformis TaxID=105414 RepID=A0A8F0F916_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 3.530e-112
Identity = 166/205 (80.98%), Postives = 184/205 (89.76%), Query Frame = 3 
Query:   81 SNAKFTESIEAHISLSIDPKYSDQQLRSTLILPKGTGKIKRIAVLMPLEGIVXXXXXXIPQKYKDLADIVGSDDLIELITKGNLDFDILISTPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDIILTLEEFKKGKLEYRADKTGIVHLLIGKSDFTNLDLLDNLNAVYTSIENNKPPGVKGQYFKTFHLCSTMGPSVEIDINDLK 695
            +NAKF ES+EAHISLSIDPKYSDQQLRSTLILPKGTG  KRIAVLMPLE I          +YK+LAD++GSDDLIE ITKG+++FDILI+TPDMMPKLAKLGRILGPKGLMPSPKAGTVTTD+ LTLEEFKKGKLEYRADKTGIVHLLIGKS+F + DLL+NL AVYTSIENNKPPGVKG+YFKTFH+CSTMGP++EIDI  LK
Sbjct:   33 ANAKFVESVEAHISLSIDPKYSDQQLRSTLILPKGTGNTKRIAVLMPLESITP--------EYKELADLIGSDDLIETITKGDINFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVKLTLEEFKKGKLEYRADKTGIVHLLIGKSNFADSDLLENLFAVYTSIENNKPPGVKGRYFKTFHICSTMGPAIEIDIAALK 229
[Close]
BLAST of mRNA_H-paniculata_contig26738.7311.1 vs. uniprot
Match: A0A6B7EV19_9PHAE (Ribosomal protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EV19_9PHAE)

HSP 1 Score: 327 bits (838), Expect = 3.960e-111
Identity = 163/205 (79.51%), Postives = 183/205 (89.27%), Query Frame = 3 
Query:   81 SNAKFTESIEAHISLSIDPKYSDQQLRSTLILPKGTGKIKRIAVLMPLEGIVXXXXXXIPQKYKDLADIVGSDDLIELITKGNLDFDILISTPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDIILTLEEFKKGKLEYRADKTGIVHLLIGKSDFTNLDLLDNLNAVYTSIENNKPPGVKGQYFKTFHLCSTMGPSVEIDINDLK 695
            +NA F ES+EAH+SLSIDPKYSDQQLRSTLILPKGTG  KRIAVLMPLE I          +Y++LAD++GSDDLIE ITKG LDFDILI+TPDMMPKLAKLGRILGPKGLMPSPKAGTVTTD+ +TLEEFKKGKLEYRADKTGIVHL+IGKS+FT+ DLL+NL AVY SIENNKPPGVKG+YFKTFH+CSTMGPS+E+DI+ LK
Sbjct:   33 ANANFIESVEAHVSLSIDPKYSDQQLRSTLILPKGTGTTKRIAVLMPLEAITP--------EYQNLADVIGSDDLIETITKGGLDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVKVTLEEFKKGKLEYRADKTGIVHLMIGKSNFTDSDLLENLLAVYKSIENNKPPGVKGRYFKTFHICSTMGPSIELDISTLK 229
[Close]
BLAST of mRNA_H-paniculata_contig26738.7311.1 vs. uniprot
Match: A0A8F0JZW3_9PHAE (Ribosomal protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZW3_9PHAE)

HSP 1 Score: 322 bits (826), Expect = 2.750e-109
Identity = 162/205 (79.02%), Postives = 179/205 (87.32%), Query Frame = 3 
Query:   81 SNAKFTESIEAHISLSIDPKYSDQQLRSTLILPKGTGKIKRIAVLMPLEGIVXXXXXXIPQKYKDLADIVGSDDLIELITKGNLDFDILISTPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDIILTLEEFKKGKLEYRADKTGIVHLLIGKSDFTNLDLLDNLNAVYTSIENNKPPGVKGQYFKTFHLCSTMGPSVEIDINDLK 695
            +NA F ES+EAHISLSIDPKYSDQQLRSTLILPKGTGK KRIAVLMPLE I          +YK LADI+GSDDLIE ITKG ++FDILI+TPDMMPKLAKLGRILGPKGLMPSPKAGTVTTD+ LTLEEFKKGK+EYRADKTGIVHLL+GKSDF   DLL+NL  VY SIENNKPPGVKG+YFKTF++CSTMGP++EIDI+  K
Sbjct:   33 ANANFVESVEAHISLSIDPKYSDQQLRSTLILPKGTGKKKRIAVLMPLESITP--------EYKQLADIIGSDDLIETITKGQINFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVKLTLEEFKKGKVEYRADKTGIVHLLLGKSDFPEEDLLENLETVYNSIENNKPPGVKGRYFKTFYICSTMGPAIEIDISAFK 229
[Close]
BLAST of mRNA_H-paniculata_contig26738.7311.1 vs. uniprot
Match: A0A6P0NJL1_9CYAN (50S ribosomal protein L1 n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NJL1_9CYAN)

HSP 1 Score: 316 bits (809), Expect = 1.030e-106
Identity = 155/205 (75.61%), Postives = 181/205 (88.29%), Query Frame = 3 
Query:   81 SNAKFTESIEAHISLSIDPKYSDQQLRSTLILPKGTGKIKRIAVLMPLEGIVXXXXXXIPQKYKDLADIVGSDDLIELITKGNLDFDILISTPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDIILTLEEFKKGKLEYRADKTGIVHLLIGKSDFTNLDLLDNLNAVYTSIENNKPPGVKGQYFKTFHLCSTMGPSVEIDINDLK 695
            +NAKF ESIE H++L+IDPKYSDQQLRSTLILPKGTGK KRIAVLMP E I          +YK LAD+VGS+DLI+LI +GNLDFDIL+STPDMMPKLAK+GRILGP+GLMPSPKAGTVT DI +TLEEFKKGKLEYRADKTGIVHLLIGKS+FTN DLL+NL ++YTS+ENN+P GVKG+YFKTFH+CSTMGPS+++D++  K
Sbjct:   33 ANAKFVESIEVHVALAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPAESITP--------EYKLLADLVGSEDLIDLINQGNLDFDILLSTPDMMPKLAKVGRILGPRGLMPSPKAGTVTNDIKITLEEFKKGKLEYRADKTGIVHLLIGKSNFTNSDLLENLISIYTSLENNRPSGVKGKYFKTFHICSTMGPSIQLDLSTFK 229
[Close]
BLAST of mRNA_H-paniculata_contig26738.7311.1 vs. uniprot
Match: A0A141BSK4_9PHAE (50S ribosomal protein L1, chloroplastic n=15 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSK4_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 1.690e-105
Identity = 159/205 (77.56%), Postives = 179/205 (87.32%), Query Frame = 3 
Query:   81 SNAKFTESIEAHISLSIDPKYSDQQLRSTLILPKGTGKIKRIAVLMPLEGIVXXXXXXIPQKYKDLADIVGSDDLIELITKGNLDFDILISTPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDIILTLEEFKKGKLEYRADKTGIVHLLIGKSDFTNLDLLDNLNAVYTSIENNKPPGVKGQYFKTFHLCSTMGPSVEIDINDLK 695
            +NAKF ESIE H++LSIDPKYSDQQLRSTLILPKGTGK KRIAVL+  E I          +Y +LADI+GSDDLIE IT+G LDFDILI+TPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDI LTL+EFKKGK+EYRADKTGIVHLLIGKS+FT  DLL+NL A+YTSIENNKP GVKG+YFKTFH+ STMGPS+++DI+ LK
Sbjct:   33 ANAKFVESIEVHVALSIDPKYSDQQLRSTLILPKGTGKTKRIAVLISSEAI--------KPEYLELADIIGSDDLIETITRGELDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDIGLTLQEFKKGKVEYRADKTGIVHLLIGKSNFTESDLLENLVAIYTSIENNKPVGVKGRYFKTFHVSSTMGPSIQLDISTLK 229
[Close]
BLAST of mRNA_H-paniculata_contig26738.7311.1 vs. uniprot
Match: A0A2I4Q2L5_9PHAE (50S ribosomal protein L1, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2L5_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 2.880e-104
Identity = 155/205 (75.61%), Postives = 179/205 (87.32%), Query Frame = 3 
Query:   81 SNAKFTESIEAHISLSIDPKYSDQQLRSTLILPKGTGKIKRIAVLMPLEGIVXXXXXXIPQKYKDLADIVGSDDLIELITKGNLDFDILISTPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDIILTLEEFKKGKLEYRADKTGIVHLLIGKSDFTNLDLLDNLNAVYTSIENNKPPGVKGQYFKTFHLCSTMGPSVEIDINDLK 695
            +NAKF ESIE HI+L+IDPKYSDQQLRSTLILPKGTGK KRIA+LMP E I          +YK L DIVGS+DLIELI+KG L+FDIL+STPDMMPKLAK+GRILGPKGLMPSPKAGT+T+DI +TLEEFKKGKLEYRADKTGIVHL+IGKS+FTN DLL+NL A+YTS+E N+P GVKG+YFKTF+LCSTMGPS+ +DI+  K
Sbjct:   33 TNAKFIESIEVHIALAIDPKYSDQQLRSTLILPKGTGKTKRIALLMPFESITP--------EYKTLTDIVGSEDLIELISKGILNFDILLSTPDMMPKLAKVGRILGPKGLMPSPKAGTITSDIKVTLEEFKKGKLEYRADKTGIVHLIIGKSNFTNSDLLENLMAIYTSLEMNRPSGVKGRYFKTFYLCSTMGPSIPLDISTFK 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26738.7311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7E6_9PHAE2.220e-12286.41Ribosomal protein n=1 Tax=Protohalopteris sp. TaxI... [more]
A0A0R6MAX7_UNDPI3.890e-11683.4150S ribosomal protein L1, chloroplastic n=33 Tax=P... [more]
D1J715_ECTSI2.240e-11582.9350S ribosomal protein L1, chloroplastic n=3 Tax=Ec... [more]
A0A8F0F9R0_9PHAE5.260e-11482.93Ribosomal protein n=1 Tax=Chorda asiatica TaxID=12... [more]
A0A8F0F916_9PHAE3.530e-11280.98Ribosomal protein n=1 Tax=Postelsia palmaeformis T... [more]
A0A6B7EV19_9PHAE3.960e-11179.51Ribosomal protein n=1 Tax=Cladosiphon okamuranus T... [more]
A0A8F0JZW3_9PHAE2.750e-10979.02Ribosomal protein n=1 Tax=Desmarestia aculeata Tax... [more]
A0A6P0NJL1_9CYAN1.030e-10675.6150S ribosomal protein L1 n=1 Tax=Moorena sp. SIO3C... [more]
A0A141BSK4_9PHAE1.690e-10577.5650S ribosomal protein L1, chloroplastic n=15 Tax=S... [more]
A0A2I4Q2L5_9PHAE2.880e-10475.6150S ribosomal protein L1, chloroplastic n=1 Tax=Di... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26738contigH-paniculata_contig26738:2223..2923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score276.9
Seed ortholog evalue5.8e-72
Seed eggNOG ortholog2880.D1J715
Preferred namerpl1
KEGG koko:K00465,ko:K02863
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031984,GO:0032543,GO:0032991,GO:0034357,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0042651,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0055035,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098798,GO:0140053,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0081@1,KOG1569@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Exons1
Model size701
Cds size486
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.6716995-UTR-H-paniculata_contig26738:2222..24371622929802.6716995-UTR-H-paniculata_contig26738:2222..2437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26738 2223..2437 +
1691481017.514288-UTR-H-paniculata_contig26738:2222..24371691481017.514288-UTR-H-paniculata_contig26738:2222..2437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26738 2223..2437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.6892166-CDS-H-paniculata_contig26738:2437..29231622929802.6892166-CDS-H-paniculata_contig26738:2437..2923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26738 2438..2923 +
1691481017.5276513-CDS-H-paniculata_contig26738:2437..29231691481017.5276513-CDS-H-paniculata_contig26738:2437..2923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26738 2438..2923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26738.7311.1prot_H-paniculata_contig26738.7311.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26738 2438..2923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26738.7311.1

>prot_H-paniculata_contig26738.7311.1 ID=prot_H-paniculata_contig26738.7311.1|Name=mRNA_H-paniculata_contig26738.7311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MPLEGIVLMPLEGIPQKYKDLADIVGSDDLIELITKGNLDFDILISTPDM
MPKLAKLGRILGPKGLMPSPKAGTVTTDIILTLEEFKKGKLEYRADKTGI
VHLLIGKSDFTNLDLLDNLNAVYTSIENNKPPGVKGQYFKTFHLCSTMGP
SVEIDINDLKN*
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mRNA from alignment at H-paniculata_contig26738:2223..2923+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26738.7311.1 ID=mRNA_H-paniculata_contig26738.7311.1|Name=mRNA_H-paniculata_contig26738.7311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=701bp|location=Sequence derived from alignment at H-paniculata_contig26738:2223..2923+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAAATTAAATAAAAGAACGAGAAATAATATAGAAAAGATAGAAAA
TCGTTTATATCTAAAAGAAGAAGCTATATCTCTAATGCTAAATTTACTGA
ATCTATTGAGGCTCATATATCATTATCTATTGATCCGAAATATAGTGACC
AACAATTAAGAAGTACCTTAATTTTACCAAAAGGTACAGGAAAAATAAAA
CGAATAGCAGTATTAATGCCTTTAGAAGGTATAGTATTAATGCCTTTAGA
AGGTATTCCACAAAAATATAAAGATTTAGCAGATATAGTTGGTTCAGATG
ATTTAATAGAATTGATTACTAAGGGGAATCTAGATTTTGATATCTTAATT
TCTACTCCAGATATGATGCCAAAATTAGCTAAATTAGGAAGAATTTTAGG
TCCAAAAGGACTAATGCCATCACCAAAAGCTGGTACAGTAACAACTGATA
TAATACTAACTTTAGAAGAATTTAAAAAAGGAAAATTAGAGTATAGAGCA
GATAAAACTGGTATTGTTCATTTATTAATTGGAAAAAGTGATTTTACTAA
TTTAGATTTATTAGATAACCTTAATGCTGTTTATACTTCAATAGAAAATA
ATAAGCCTCCCGGTGTAAAAGGTCAATATTTTAAAACTTTCCATCTCTGT
AGTACTATGGGACCATCTGTTGAAATTGATATAAATGACTTAAAAAATTA
A
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Coding sequence (CDS) from alignment at H-paniculata_contig26738:2223..2923+

>mRNA_H-paniculata_contig26738.7311.1 ID=mRNA_H-paniculata_contig26738.7311.1|Name=mRNA_H-paniculata_contig26738.7311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig26738:2223..2923+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTTTAGAAGGTATAGTATTAATGCCTTTAGAAGGTATTCCACAAAA
ATATAAAGATTTAGCAGATATAGTTGGTTCAGATGATTTAATAGAATTGA
TTACTAAGGGGAATCTAGATTTTGATATCTTAATTTCTACTCCAGATATG
ATGCCAAAATTAGCTAAATTAGGAAGAATTTTAGGTCCAAAAGGACTAAT
GCCATCACCAAAAGCTGGTACAGTAACAACTGATATAATACTAACTTTAG
AAGAATTTAAAAAAGGAAAATTAGAGTATAGAGCAGATAAAACTGGTATT
GTTCATTTATTAATTGGAAAAAGTGATTTTACTAATTTAGATTTATTAGA
TAACCTTAATGCTGTTTATACTTCAATAGAAAATAATAAGCCTCCCGGTG
TAAAAGGTCAATATTTTAAAACTTTCCATCTCTGTAGTACTATGGGACCA
TCTGTTGAAATTGATATAAATGACTTAAAAAATTAAATGCCTTTAGAAGG
TATAGTATTAATGCCTTTAGAAGGTATTCCACAAAAATATAAAGATTTAG
CAGATATAGTTGGTTCAGATGATTTAATAGAATTGATTACTAAGGGGAAT
CTAGATTTTGATATCTTAATTTCTACTCCAGATATGATGCCAAAATTAGC
TAAATTAGGAAGAATTTTAGGTCCAAAAGGACTAATGCCATCACCAAAAG
CTGGTACAGTAACAACTGATATAATACTAACTTTAGAAGAATTTAAAAAA
GGAAAATTAGAGTATAGAGCAGATAAAACTGGTATTGTTCATTTATTAAT
TGGAAAAAGTGATTTTACTAATTTAGATTTATTAGATAACCTTAATGCTG
TTTATACTTCAATAGAAAATAATAAGCCTCCCGGTGTAAAAGGTCAATAT
TTTAAAACTTTCCATCTCTGTAGTACTATGGGACCATCTGTTGAAATTGA
TATAAATGACTTAAAAAATTAA
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