mRNA_H-paniculata_contig26718.7307.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26718.7307.1
Unique NamemRNA_H-paniculata_contig26718.7307.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig26718.7307.1 vs. uniprot
Match: D8LNP1_ECTSI (Acyl-CoA dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP1_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 4.760e-117
Identity = 175/193 (90.67%), Postives = 184/193 (95.34%), Query Frame = 1 
Query:    1 SLYCAPVEKFGTSEQKQEHLVPFASGAKLGCFALSEPGNGSDAGAARTTARLDGDEWVLDGTKAWITNAYDAQSSVVFATTDSSKKHKGISAFIVPLDAPGMSLGKKEDKLGIRASSTANLIMEGCRVPKANLLGEVGMGFKVAMGTLDAGRIGIAGQALGIAAASLDCAVKYSMERKSFGKPISDLYAIQVK 579
            SLYCAP+EKFG+ EQK EHL PFASGA LGCFALSEPGNGSDAGAARTTARL+GD+WVLDGTKAWITNA+DAQSS+VFATTDSSKKHKGISAFIVPL+ PGMSLGKKEDKLGIRASSTANLIMEGCRVPKANLLGE GMGFK+AMGTLDAGRIGIAGQALGIAAASLDCAVKYSMERKSFG+PI  LYAIQ K
Sbjct:  122 SLYCAPIEKFGSPEQKDEHLKPFASGASLGCFALSEPGNGSDAGAARTTARLEGDQWVLDGTKAWITNAHDAQSSIVFATTDSSKKHKGISAFIVPLETPGMSLGKKEDKLGIRASSTANLIMEGCRVPKANLLGEEGMGFKIAMGTLDAGRIGIAGQALGIAAASLDCAVKYSMERKSFGQPICGLYAIQSK 314
[Close]
BLAST of mRNA_H-paniculata_contig26718.7307.1 vs. uniprot
Match: A0A7S1NP91_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NP91_9EUGL)

HSP 1 Score: 293 bits (750), Expect = 1.280e-95
Identity = 148/193 (76.68%), Postives = 163/193 (84.46%), Query Frame = 1 
Query:    1 SLYCAPVEKFGTSEQKQEHLVPFASGAKLGCFALSEPGNGSDAGAARTTARLDGDEWVLDGTKAWITNAYDAQSSVVFATTDSSKKHKGISAFIVPLDAPGMSLGKKEDKLGIRASSTANLIMEGCRVPKANLLGEVGMGFKVAMGTLDAGRIGIAGQALGIAAASLDCAVKYSMERKSFGKPISDLYAIQVK 579
            SLYCAPV  FGT  QK E L PFASG KLGCF LSEPGNGSDAGAA TTA +DGD WVL+GTKAWITNA+DA +++VFATT+ S KHKGISAFIVP D  G S+G KEDKLGIRASST NLIME CRVPKANLLG+ G GFK+AM TLD GRIGIAGQALGIA AS+DCA KY++ERK+FG PIS LYAIQ+K
Sbjct:  126 SLYCAPVAAFGTDAQKAEFLTPFASGEKLGCFGLSEPGNGSDAGAASTTATVDGDSWVLNGTKAWITNAHDAHAAIVFATTNKSLKHKGISAFIVPTDTTGFSVGAKEDKLGIRASSTGNLIMEDCRVPKANLLGQEGEGFKIAMWTLDGGRIGIAGQALGIAQASVDCAAKYALERKAFGAPISKLYAIQLK 318
[Close]
BLAST of mRNA_H-paniculata_contig26718.7307.1 vs. uniprot
Match: U3J8W0_ANAPP (Acyl-CoA dehydrogenase short chain n=6 Tax=Aves TaxID=8782 RepID=U3J8W0_ANAPP)

HSP 1 Score: 288 bits (737), Expect = 2.280e-94
Identity = 143/193 (74.09%), Postives = 165/193 (85.49%), Query Frame = 1 
Query:    1 SLYCAPVEKFGTSEQKQEHLVPFASGAKLGCFALSEPGNGSDAGAARTTARLDGDEWVLDGTKAWITNAYDAQSSVVFATTDSSKKHKGISAFIVPLDAPGMSLGKKEDKLGIRASSTANLIMEGCRVPKANLLGEVGMGFKVAMGTLDAGRIGIAGQALGIAAASLDCAVKYSMERKSFGKPISDLYAIQVK 579
            SLY  P+ KFG+ EQK + + PF SG K+GCFALSEPGNGSDAGAA T ARLDGDEWVL+GTKAWITNA+DA ++VVFATTD + KHKGISAF+VP+  PG+SLGKKEDKLGIRASSTANLI E CR+PKANLLG++GMGFK+AM TLDAGRIGIA QALGIA A+LDCAV Y+ +R +FG PI+ L AIQ K
Sbjct:   84 SLYLGPILKFGSEEQKHQWIAPFTSGEKIGCFALSEPGNGSDAGAATTVARLDGDEWVLNGTKAWITNAWDASAAVVFATTDKALKHKGISAFLVPMPTPGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQLGMGFKIAMQTLDAGRIGIASQALGIAQAALDCAVDYAEKRTAFGSPITKLQAIQFK 276
[Close]
BLAST of mRNA_H-paniculata_contig26718.7307.1 vs. uniprot
Match: A0A093HYG1_STRCA (Uncharacterized protein (Fragment) n=3 Tax=Sauria TaxID=32561 RepID=A0A093HYG1_STRCA)

HSP 1 Score: 286 bits (732), Expect = 4.620e-94
Identity = 143/193 (74.09%), Postives = 164/193 (84.97%), Query Frame = 1 
Query:    1 SLYCAPVEKFGTSEQKQEHLVPFASGAKLGCFALSEPGNGSDAGAARTTARLDGDEWVLDGTKAWITNAYDAQSSVVFATTDSSKKHKGISAFIVPLDAPGMSLGKKEDKLGIRASSTANLIMEGCRVPKANLLGEVGMGFKVAMGTLDAGRIGIAGQALGIAAASLDCAVKYSMERKSFGKPISDLYAIQVK 579
            SLY  P+ KFG+ EQKQ+ + PF  G K+GCFALSEPGNGSDAGAA TTARLDGDEWVL+GTKAWITNA+DA ++VVFATTD S KHKGISAF+VP+   G+SLGKKEDKLGIRASSTANLI E CR+PKANLLG+ GMGFK+AM TLDAGRIGIA QALGIA A+LDCAV Y+ +R +FG PI+ L A+Q K
Sbjct:   51 SLYLGPILKFGSEEQKQKWIAPFTGGDKIGCFALSEPGNGSDAGAASTTARLDGDEWVLNGTKAWITNAWDASATVVFATTDKSLKHKGISAFLVPMPTAGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQQGMGFKIAMQTLDAGRIGIASQALGIAQAALDCAVDYAEKRMAFGSPITKLQAVQFK 243
[Close]
BLAST of mRNA_H-paniculata_contig26718.7307.1 vs. uniprot
Match: A0A8C0VHV1_CYACU (Acyl-CoA dehydrogenase short chain n=1 Tax=Cyanistes caeruleus TaxID=156563 RepID=A0A8C0VHV1_CYACU)

HSP 1 Score: 286 bits (732), Expect = 6.550e-94
Identity = 142/193 (73.58%), Postives = 163/193 (84.46%), Query Frame = 1 
Query:    1 SLYCAPVEKFGTSEQKQEHLVPFASGAKLGCFALSEPGNGSDAGAARTTARLDGDEWVLDGTKAWITNAYDAQSSVVFATTDSSKKHKGISAFIVPLDAPGMSLGKKEDKLGIRASSTANLIMEGCRVPKANLLGEVGMGFKVAMGTLDAGRIGIAGQALGIAAASLDCAVKYSMERKSFGKPISDLYAIQVK 579
            SLY  P+ KFG+ EQK + + PF SG K+GCFALSEPGNGSDAGAA T ARLDGDEWVL+GTKAWITNA+DA ++VVFATTD S KHKGISAF+VP+  PG+SLGKKEDKLGIRASSTANLI E CR+PKANLLG+ GMGFK+AM TLD GRIGIA QALGIA A+LDCAV Y+ +R +FG PI+ L A+Q K
Sbjct:   82 SLYLGPILKFGSEEQKHQWIAPFTSGEKIGCFALSEPGNGSDAGAASTVARLDGDEWVLNGTKAWITNAWDASATVVFATTDKSLKHKGISAFLVPMPTPGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQPGMGFKIAMQTLDGGRIGIASQALGIAQAALDCAVDYAEKRMAFGSPITKLQAVQFK 274
[Close]
BLAST of mRNA_H-paniculata_contig26718.7307.1 vs. uniprot
Match: UPI00093AE384 (short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X2 n=1 Tax=Crocodylus porosus TaxID=8502 RepID=UPI00093AE384)

HSP 1 Score: 283 bits (725), Expect = 9.300e-94
Identity = 142/193 (73.58%), Postives = 163/193 (84.46%), Query Frame = 1 
Query:    1 SLYCAPVEKFGTSEQKQEHLVPFASGAKLGCFALSEPGNGSDAGAARTTARLDGDEWVLDGTKAWITNAYDAQSSVVFATTDSSKKHKGISAFIVPLDAPGMSLGKKEDKLGIRASSTANLIMEGCRVPKANLLGEVGMGFKVAMGTLDAGRIGIAGQALGIAAASLDCAVKYSMERKSFGKPISDLYAIQVK 579
            SLY  PV KFG+ EQK + + PF SG K+GCFALSEPGNGSDAGAA T A LDGDEWVL+GTKAWITNA+DA + VVFATTD S+KHKGISAF+VP+  PG+SLGKKEDKLGIRASSTANLI E CR+PKANLLG++GMGFK+AM TLD GRIGIA QALGIA A+LDCAV Y+ +R +FG PI+ L AIQ +
Sbjct:    6 SLYLGPVLKFGSEEQKHKWIAPFTSGDKIGCFALSEPGNGSDAGAASTVASLDGDEWVLNGTKAWITNAWDASAVVVFATTDKSQKHKGISAFLVPMPTPGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQLGMGFKIAMQTLDTGRIGIASQALGIAQAALDCAVDYAEKRVAFGSPITKLQAIQAE 198
[Close]
BLAST of mRNA_H-paniculata_contig26718.7307.1 vs. uniprot
Match: UPI00163B9025 (short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X2 n=1 Tax=Egretta garzetta TaxID=188379 RepID=UPI00163B9025)

HSP 1 Score: 284 bits (726), Expect = 9.720e-94
Identity = 141/191 (73.82%), Postives = 163/191 (85.34%), Query Frame = 1 
Query:    1 SLYCAPVEKFGTSEQKQEHLVPFASGAKLGCFALSEPGNGSDAGAARTTARLDGDEWVLDGTKAWITNAYDAQSSVVFATTDSSKKHKGISAFIVPLDAPGMSLGKKEDKLGIRASSTANLIMEGCRVPKANLLGEVGMGFKVAMGTLDAGRIGIAGQALGIAAASLDCAVKYSMERKSFGKPISDLYAIQ 573
            SLY  P+ KFG+ EQK + + PF SG K+GCFALSEPGNGSDAGAA T ARLDGDEWVL+GTKAWITNA+DA ++VVFATTD S KHKGISAF+VP+   G+SLGKKEDKLGIRASSTANLI E CR+PKANLLG++GMGFK+AM TLDAGRIGIA QALGIA A+LDCAV Y+ +R +FG PI+ L A+Q
Sbjct:   82 SLYLGPILKFGSEEQKHKWIAPFTSGEKIGCFALSEPGNGSDAGAASTVARLDGDEWVLNGTKAWITNAWDASATVVFATTDKSLKHKGISAFLVPMPTAGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQLGMGFKIAMQTLDAGRIGIASQALGIAQAALDCAVDYAEKRMAFGSPITKLQAVQ 272
[Close]
BLAST of mRNA_H-paniculata_contig26718.7307.1 vs. uniprot
Match: UPI00071A9C02 (short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X2 n=1 Tax=Sturnus vulgaris TaxID=9172 RepID=UPI00071A9C02)

HSP 1 Score: 286 bits (731), Expect = 1.270e-93
Identity = 142/193 (73.58%), Postives = 163/193 (84.46%), Query Frame = 1 
Query:    1 SLYCAPVEKFGTSEQKQEHLVPFASGAKLGCFALSEPGNGSDAGAARTTARLDGDEWVLDGTKAWITNAYDAQSSVVFATTDSSKKHKGISAFIVPLDAPGMSLGKKEDKLGIRASSTANLIMEGCRVPKANLLGEVGMGFKVAMGTLDAGRIGIAGQALGIAAASLDCAVKYSMERKSFGKPISDLYAIQVK 579
            SLY  P+ KFG+ EQK + + PF SG K+GCFALSEPGNGSDAGAA T ARLDGDEWVL+GTKAWITNA+DA ++VVFATTD S KHKGISAF+VP+  PG+SLGKKEDKLGIRASSTANLI E CR+PKANLLG+ GMGFK+AM TLD GRIGIA QALGIA A+LDCAV Y+ +R +FG PI+ L A+Q K
Sbjct:  119 SLYLGPILKFGSEEQKHQWIAPFTSGEKIGCFALSEPGNGSDAGAASTMARLDGDEWVLNGTKAWITNAWDASATVVFATTDKSLKHKGISAFLVPMPTPGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQPGMGFKIAMQTLDGGRIGIASQALGIAQAALDCAVDYAEKRMAFGSPITKLQAVQFK 311
[Close]
BLAST of mRNA_H-paniculata_contig26718.7307.1 vs. uniprot
Match: A0A6J3DW88_AYTFU (short-chain specific acyl-CoA dehydrogenase, mitochondrial n=4 Tax=Neognathae TaxID=8825 RepID=A0A6J3DW88_AYTFU)

HSP 1 Score: 287 bits (734), Expect = 1.950e-93
Identity = 142/193 (73.58%), Postives = 165/193 (85.49%), Query Frame = 1 
Query:    1 SLYCAPVEKFGTSEQKQEHLVPFASGAKLGCFALSEPGNGSDAGAARTTARLDGDEWVLDGTKAWITNAYDAQSSVVFATTDSSKKHKGISAFIVPLDAPGMSLGKKEDKLGIRASSTANLIMEGCRVPKANLLGEVGMGFKVAMGTLDAGRIGIAGQALGIAAASLDCAVKYSMERKSFGKPISDLYAIQVK 579
            SLY  P+ KFG+ EQK + + PF SG K+GCFALSEPGNGSDAGAA T ARLDGDEWVL+GTKAWITNA+DA ++VVFATTD + KH+GISAF+VP+  PG+SLGKKEDKLGIRASSTANLI E CR+PKANLLG++GMGFK+AM TLDAGRIGIA QALGIA A+LDCAV Y+ +R +FG PI+ L AIQ K
Sbjct:  120 SLYLGPILKFGSEEQKHQWIAPFTSGEKIGCFALSEPGNGSDAGAATTVARLDGDEWVLNGTKAWITNAWDASAAVVFATTDKALKHRGISAFLVPMPTPGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQLGMGFKIAMQTLDAGRIGIASQALGIAQAALDCAVDYAEKRTAFGSPITKLQAIQFK 312
[Close]
BLAST of mRNA_H-paniculata_contig26718.7307.1 vs. uniprot
Match: A0A7K4TWM6_9SYLV (ACADS protein (Fragment) n=11 Tax=Archelosauria TaxID=1329799 RepID=A0A7K4TWM6_9SYLV)

HSP 1 Score: 286 bits (732), Expect = 2.000e-93
Identity = 142/193 (73.58%), Postives = 163/193 (84.46%), Query Frame = 1 
Query:    1 SLYCAPVEKFGTSEQKQEHLVPFASGAKLGCFALSEPGNGSDAGAARTTARLDGDEWVLDGTKAWITNAYDAQSSVVFATTDSSKKHKGISAFIVPLDAPGMSLGKKEDKLGIRASSTANLIMEGCRVPKANLLGEVGMGFKVAMGTLDAGRIGIAGQALGIAAASLDCAVKYSMERKSFGKPISDLYAIQVK 579
            SLY  P+ KFG+ EQK + + PF SG K+GCFALSEPGNGSDAGAA T ARLDGDEWVL+GTKAWITNA+DA ++VVFATTD S KHKGISAF+VP+  PG+SLGKKEDKLGIRASSTANLI E CR+PKANLLG+ GMGFK+AM TLD GRIGIA QALGIA A+LDCAV Y+ +R +FG PI+ L A+Q K
Sbjct:   99 SLYLGPILKFGSEEQKHQWIAPFTSGEKIGCFALSEPGNGSDAGAASTVARLDGDEWVLNGTKAWITNAWDASATVVFATTDKSLKHKGISAFLVPMPTPGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQPGMGFKIAMQTLDGGRIGIASQALGIAQAALDCAVDYAEKRMAFGSPITKLQAVQFK 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26718.7307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNP1_ECTSI4.760e-11790.67Acyl-CoA dehydrogenase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7S1NP91_9EUGL1.280e-9576.68Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
U3J8W0_ANAPP2.280e-9474.09Acyl-CoA dehydrogenase short chain n=6 Tax=Aves Ta... [more]
A0A093HYG1_STRCA4.620e-9474.09Uncharacterized protein (Fragment) n=3 Tax=Sauria ... [more]
A0A8C0VHV1_CYACU6.550e-9473.58Acyl-CoA dehydrogenase short chain n=1 Tax=Cyanist... [more]
UPI00093AE3849.300e-9473.58short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
UPI00163B90259.720e-9473.82short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
UPI00071A9C021.270e-9373.58short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
A0A6J3DW88_AYTFU1.950e-9373.58short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
A0A7K4TWM6_9SYLV2.000e-9373.58ACADS protein (Fragment) n=11 Tax=Archelosauria Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26718contigH-paniculata_contig26718:543..3184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score349.7
Seed ortholog evalue8.4e-94
Seed eggNOG ortholog2880.D8LNP1
Preferred nameACADS
KEGG rclassRC00052,RC00068,RC00076,RC00120,RC00148
KEGG koko:K00248
KEGG ReactionR01175,R01178,R02661,R03172,R04751
KEGG Pathwayko00071,ko00280,ko00650,ko01100,ko01110,ko01120,ko01200,ko01212,map00071,map00280,map00650,map01100,map01110,map01120,map01200,map01212
Hectar predicted targeting categoryother localisation
GOsGO:0000062,GO:0000166,GO:0003674,GO:0003824,GO:0003995,GO:0004085,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005759,GO:0006082,GO:0006139,GO:0006351,GO:0006352,GO:0006366,GO:0006367,GO:0006629,GO:0006631,GO:0006635,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009062,GO:0009605,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0010467,GO:0014070,GO:0016020,GO:0016042,GO:0016043,GO:0016054,GO:0016070,GO:0016491,GO:0016592,GO:0016627,GO:0017076,GO:0018130,GO:0019395,GO:0019438,GO:0019605,GO:0019626,GO:0019752,GO:0022607,GO:0030258,GO:0030554,GO:0031090,GO:0031667,GO:0031960,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032787,GO:0032991,GO:0033218,GO:0033539,GO:0033993,GO:0034440,GO:0034641,GO:0034645,GO:0034654,GO:0036094,GO:0042221,GO:0042594,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044271,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046359,GO:0046395,GO:0046459,GO:0046483,GO:0048037,GO:0048545,GO:0050660,GO:0050662,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051384,GO:0052890,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0072329,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901567,GO:1901575,GO:1901576,GO:1901681
EggNOG free text desc.oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
EggNOG OGsCOG1960@1,KOG0139@2759
EC1.3.8.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size579
Cds size579
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26718.7307.1prot_H-paniculata_contig26718.7307.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26718 543..3184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.2309468-CDS-H-paniculata_contig26718:542..6471622929802.2309468-CDS-H-paniculata_contig26718:542..647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26718 543..647 -
1691481017.2810988-CDS-H-paniculata_contig26718:542..6471691481017.2810988-CDS-H-paniculata_contig26718:542..647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26718 543..647 -
1622929802.2461715-CDS-H-paniculata_contig26718:1151..13621622929802.2461715-CDS-H-paniculata_contig26718:1151..1362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26718 1152..1362 -
1691481017.294347-CDS-H-paniculata_contig26718:1151..13621691481017.294347-CDS-H-paniculata_contig26718:1151..1362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26718 1152..1362 -
1622929802.2639415-CDS-H-paniculata_contig26718:2111..22441622929802.2639415-CDS-H-paniculata_contig26718:2111..2244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26718 2112..2244 -
1691481017.3070982-CDS-H-paniculata_contig26718:2111..22441691481017.3070982-CDS-H-paniculata_contig26718:2111..2244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26718 2112..2244 -
1622929802.2790556-CDS-H-paniculata_contig26718:3054..31841622929802.2790556-CDS-H-paniculata_contig26718:3054..3184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26718 3055..3184 -
1691481017.3195734-CDS-H-paniculata_contig26718:3054..31841691481017.3195734-CDS-H-paniculata_contig26718:3054..3184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26718 3055..3184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26718.7307.1

>prot_H-paniculata_contig26718.7307.1 ID=prot_H-paniculata_contig26718.7307.1|Name=mRNA_H-paniculata_contig26718.7307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp
SLYCAPVEKFGTSEQKQEHLVPFASGAKLGCFALSEPGNGSDAGAARTTA
RLDGDEWVLDGTKAWITNAYDAQSSVVFATTDSSKKHKGISAFIVPLDAP
GMSLGKKEDKLGIRASSTANLIMEGCRVPKANLLGEVGMGFKVAMGTLDA
GRIGIAGQALGIAAASLDCAVKYSMERKSFGKPISDLYAIQVK
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mRNA from alignment at H-paniculata_contig26718:543..3184-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26718.7307.1 ID=mRNA_H-paniculata_contig26718.7307.1|Name=mRNA_H-paniculata_contig26718.7307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2642bp|location=Sequence derived from alignment at H-paniculata_contig26718:543..3184- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACTATATTGCGCCCCAGTCGAGAAATTCGGCACCTCTGAGCAGAAGCA
GGAGCATCTGGTTCCGTTCGCCTCCGGCGCCAAGTTAGGGTGCTTTGCGC
TCTCGGAACCTGGCAACGGTAGCGATGCAGGTGCGCTTTGCTGAACATAC
CGATTGGTTGATAGATTGGTCGCTCGCTTGCTTGTTGTACGTCTTCAGTT
TTTAACGTGCTGTGGTCTGAAAGCCTCTAAGCCTCAAAAAGAGTTTCTCG
TACTTGGCTAAGTAAACGCACAATATTTTTGCTGAGAGTAAAGCTGAGGG
TACAGCGTTTTGTGTTCGGAGGCGTTTTCCGTGCAGGATTTTGATGAACA
GGAGCGTTTGTAGGGGCTCACGTGTTTCGTGTTGATGAGGAAAAAACGCA
ATTTTTAGTGGAGGAATTTGAGGGCTCATGGTCTGGACTTCAACGTTGCC
TGTCATCCATTATGACAGGGTTTTGTAATGTAATTTGGTGTACATGTACA
TATGTGTGCTCCCGCGTTTTGCAGTCGCATACCAACATCGTCGGAAACAT
CGTAGCAACAATGAGAGAGGTATACAATTATGCCATATCCTACTGTCGTG
GAGCCTGTGTTGAACGCTCGTGAGCGGACCGATATTTTCGTTTATGTAAG
CAAACAAAGTTATCATTGAACTGCACGTTGCACGCACTCACCTCTCTAAT
TGCAGCATCACCAACGCGGACGCTTCACAAATCTAGATGTGTACGCGACT
GCCACTTATCCCCCAAAACTCGTATGGGGAAGTCCTGCAGGGAACTGGCG
ACGTGATTCCTTTGTTTTTCTTTATTAGTGGATAACAAAAGTATTACAAC
CAGCAGAATTTTCGCAATGGTACGAGCAAGAAGCTCAAGGTATATGCCAT
TTTTTGCTGTAAATATATTTCAATTCTTACACCTTGGAAGGTGCTGCGCG
AACGACCGCCCGATTGGATGGCGATGAGTGGGTGTTGGACGGGACAAAGG
CATGGATCACCAACGCGTACGATGCGCAATCTTCGGTAGTCTTCGCCACC
ACTGACAGTTCCAAGAAGCACAAGTGAGAACGAGAAGCTCCTATGAGAGA
CACCAGTATCTCATCAGTATCAGTATCAGTATGAGATGAAGTGCGAGATG
AAGCACATGCAACATGAAACGTGCGGAATTCGTCTGTAGGGAGCACCGAT
CAGTGTGAAGCATCCGTGAAGAAGCACGAAGCACTATGATGCACAAGCAT
GAAGCATTGTTCAGAAGCGCAAGTAAAGGGTCACACGTAAACGTCGAGAA
CCACGGGTAAAAAAAGAAGACTAACACAGTTACAGGTATTACACAAGAAG
AAGCCTGTGGCCTGTCAGGTTCCGGCGCGACAGCACTACAGCACTACAAC
ACCACGTTAGACTGAGTAGAGGCTAATTTCTGTCGAGCGTAGCAGGGGTA
GGCAAAGAGTGGACTGTATACCGAAGTTGCCATTGGTGATGTGCTAGCAA
TATGATGTAGAGGCGATGTTTGGAGACTCCACATGCAGAGCGATTTGTTG
TGAGCTCCTCGTAGCAGGCAGTACGAGACCCCCCGCCCCCTCCCAGGCGA
CCGGAAAAGAGTGGACACCCGCGATCGCTTGATTAGCCACAGCGGTGCCT
CGCCGATACCACGTCAAGACAAGTTAAAACATGCTTTGAGGGAAAATGAT
GAGCTCCTATTAAAAAGAAATCCAAAGCAACAGGCGTTTCCCGATACAAT
CTTTCGATAGCACTAATTCACTAAGGGATTTTGTACTCATTATCGCTGCG
TGGTATGATGTGGAAATCGCAGGGGGATTAGCGCGTTTATTGTGCCTTTG
GATGCTCCAGGAATGTCGCTTGGCAAGAAGGAGGACAAGCTCGGCATCAG
GGCCTCCTCCACGGCCAATCTTATCATGGAGGGGTGCAGAGTGCCTAAGG
CCAACCTACTGGGGGAGGTTGGTATGGGATTTAAGGTTGCGATGGGCACG
TTGGACGCCGGGCGGATTGGTATCGCGGGTCAGGTCAGTGCATTTTTGTA
TGTTTGACTGTTTGCTCGGGTATTGTTATTGTCATGACCCATTGCTATTG
CTGATTGTTTTTTGGTGGTGGTAGTGGTGATTTGCATGGTTTGCATGGTT
TGCATGGTTTGCCTGGTGTTGAAGATGTGAGAACATCGCGATCAAGGCCT
TTTTTAAGCACCTTCGTCAGATGCCATCGTTAATCATGACTCGCCAAGAC
GTACGCCAATTTAACCTTGTCATCTCGGTTTTGACTGGTCTGAGGTAACT
GCATGAATCGCTCGAGGACGCTTTATGCTGCAGTCATCGACAGTACGACA
TGTAGAATGCACTACGCGATAGTGCTTGCTGGCAGGACGGTCGAATGGAG
GTGCAGATCTGGCACGGCGATGGTAGGGTGCAGAGTGCAGCAACCCAACA
TGGGGGTGGACACAGACCAATCCGTTTGTTAACAATACAAGCGTGAAGTG
TGTTGCCTTGTGTTTGCTTGACCTTTCCTGGCAACAGGCGCTCGGAATTG
CCGCTGCGAGCTTGGATTGTGCCGTCAAGTATTCCATGGAGAGGAAATCT
TTTGGCAAACCCATCAGCGACCTTTATGCTATCCAGGTGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig26718:543..3184-

>mRNA_H-paniculata_contig26718.7307.1 ID=mRNA_H-paniculata_contig26718.7307.1|Name=mRNA_H-paniculata_contig26718.7307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig26718:543..3184- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACTATATTGCGCCCCAGTCGAGAAATTCGGCACCTCTGAGCAGAAGCA
GGAGCATCTGGTTCCGTTCGCCTCCGGCGCCAAGTTAGGGTGCTTTGCGC
TCTCGGAACCTGGCAACGGTAGCGATGCAGTCACTATATTGCGCCCCAGT
CGAGAAATTCGGCACCTCTGAGCAGAAGCAGGAGCATCTGGTTCCGTTCG
CCTCCGGCGCCAAGTTAGGGTGCTTTGCGCTCTCGGAACCTGGCAACGGT
AGCGATGCAGGTGCTGCGCGAACGACCGCCCGATTGGATGGCGATGAGTG
GGTGTTGGACGGGACAAAGGCATGGATCACCAACGCGTACGATGCGCAAT
CTTCGGTAGTCTTCGCCACCACTGACAGTTCCAAGAAGCACAAGTGCTGC
GCGAACGACCGCCCGATTGGATGGCGATGAGTGGGTGTTGGACGGGACAA
AGGCATGGATCACCAACGCGTACGATGCGCAATCTTCGGTAGTCTTCGCC
ACCACTGACAGTTCCAAGAAGCACAAGGGGATTAGCGCGTTTATTGTGCC
TTTGGATGCTCCAGGAATGTCGCTTGGCAAGAAGGAGGACAAGCTCGGCA
TCAGGGCCTCCTCCACGGCCAATCTTATCATGGAGGGGTGCAGAGTGCCT
AAGGCCAACCTACTGGGGGAGGTTGGTATGGGATTTAAGGTTGCGATGGG
CACGTTGGACGCCGGGCGGATTGGTATCGCGGGTCAGGGGGATTAGCGCG
TTTATTGTGCCTTTGGATGCTCCAGGAATGTCGCTTGGCAAGAAGGAGGA
CAAGCTCGGCATCAGGGCCTCCTCCACGGCCAATCTTATCATGGAGGGGT
GCAGAGTGCCTAAGGCCAACCTACTGGGGGAGGTTGGTATGGGATTTAAG
GTTGCGATGGGCACGTTGGACGCCGGGCGGATTGGTATCGCGGGTCAGGC
GCTCGGAATTGCCGCTGCGAGCTTGGATTGTGCCGTCAAGTATTCCATGG
AGAGGAAATCTTTTGGCAAACCCATCAGCGACCTTTATGCTATCCAGGTG
AAGGCGCTCGGAATTGCCGCTGCGAGCTTGGATTGTGCCGTCAAGTATTC
CATGGAGAGGAAATCTTTTGGCAAACCCATCAGCGACCTTTATGCTATCC
AGGTGAAG
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