mRNA_H-paniculata_contig26708.7304.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26708.7304.1
Unique NamemRNA_H-paniculata_contig26708.7304.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26708.7304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26708contigH-paniculata_contig26708:2537..3133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size597
Cds size540
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929801.9888513-UTR-H-paniculata_contig26708:2536..25931622929801.9888513-UTR-H-paniculata_contig26708:2536..2593Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26708 2537..2593 +
1691481017.1894324-UTR-H-paniculata_contig26708:2536..25931691481017.1894324-UTR-H-paniculata_contig26708:2536..2593Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26708 2537..2593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.0027885-CDS-H-paniculata_contig26708:2593..31331622929802.0027885-CDS-H-paniculata_contig26708:2593..3133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26708 2594..3133 +
1691481017.1982832-CDS-H-paniculata_contig26708:2593..31331691481017.1982832-CDS-H-paniculata_contig26708:2593..3133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26708 2594..3133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26708.7304.1prot_H-paniculata_contig26708.7304.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26708 2594..3133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26708.7304.1

>prot_H-paniculata_contig26708.7304.1 ID=prot_H-paniculata_contig26708.7304.1|Name=mRNA_H-paniculata_contig26708.7304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
MVVMPAPESSTVPTVSGAASSPPPGSKTSAVVWNLSASTSTVPTTSSSST
VPTSASATSPASFSSVPVHTRLLWACGPAPGAASPEPLADIAPSALSLIS
TIFSTYSVSSAGTCMYFPFVLLFVCGVAPLSTATARLAVPCCPACDRVPV
YGPCHLAVAGAGVRGPTVTVGLEPCCPAPE
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mRNA from alignment at H-paniculata_contig26708:2537..3133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26708.7304.1 ID=mRNA_H-paniculata_contig26708.7304.1|Name=mRNA_H-paniculata_contig26708.7304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=597bp|location=Sequence derived from alignment at H-paniculata_contig26708:2537..3133+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACACGATCCGTTGTCCGGGAAACTGAGCTTCCAGTTGCGGGACCAGGCT
CTCCGAGATGGTTGTGATGCCGGCGCCAGAGTCCAGCACGGTCCCTACGG
TCAGCGGTGCAGCATCGTCGCCGCCACCAGGCAGTAAGACATCGGCGGTG
GTGTGGAACTTGAGCGCCTCGACATCCACTGTGCCCACCACGTCGTCGTC
GTCGACCGTCCCAACCTCAGCATCCGCCACTTCACCCGCATCCTTCTCGT
CAGTGCCTGTCCACACTCGGTTACTATGGGCTTGCGGGCCTGCACCAGGC
GCCGCCTCGCCTGAGCCGCTCGCCGACATTGCCCCTTCGGCGCTCAGCTT
GATTTCCACCATCTTCTCCACATATTCCGTTAGCTCAGCTGGAACATGCA
TGTATTTCCCCTTCGTCTTATTGTTCGTCTGCGGCGTCGCGCCGCTCTCA
ACAGCAACGGCGCGACTCGCCGTCCCGTGCTGTCCCGCCTGCGATCGGGT
CCCGGTGTACGGGCCTTGCCACCTGGCCGTTGCCGGTGCTGGCGTCCGTG
GCCCGACCGTCACAGTCGGTCTCGAACCCTGCTGCCCTGCCCCAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig26708:2537..3133+

>mRNA_H-paniculata_contig26708.7304.1 ID=mRNA_H-paniculata_contig26708.7304.1|Name=mRNA_H-paniculata_contig26708.7304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig26708:2537..3133+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGTGATGCCGGCGCCAGAGTCCAGCACGGTCCCTACGGTCAGCGG
TGCAGCATCGTCGCCGCCACCAGGCAGTAAGACATCGGCGGTGGTGTGGA
ACTTGAGCGCCTCGACATCCACTGTGCCCACCACGTCGTCGTCGTCGACC
GTCCCAACCTCAGCATCCGCCACTTCACCCGCATCCTTCTCGTCAGTGCC
TGTCCACACTCGGTTACTATGGGCTTGCGGGCCTGCACCAGGCGCCGCCT
CGCCTGAGCCGCTCGCCGACATTGCCCCTTCGGCGCTCAGCTTGATTTCC
ACCATCTTCTCCACATATTCCGTTAGCTCAGCTGGAACATGCATGTATTT
CCCCTTCGTCTTATTGTTCGTCTGCGGCGTCGCGCCGCTCTCAACAGCAA
CGGCGCGACTCGCCGTCCCGTGCTGTCCCGCCTGCGATCGGGTCCCGGTG
TACGGGCCTTGCCACCTGGCCGTTGCCGGTGCTGGCGTCCGTGGCCCGAC
CGTCACAGTCGGTCTCGAACCCTGCTGCCCTGCCCCAGAAATGGTTGTGA
TGCCGGCGCCAGAGTCCAGCACGGTCCCTACGGTCAGCGGTGCAGCATCG
TCGCCGCCACCAGGCAGTAAGACATCGGCGGTGGTGTGGAACTTGAGCGC
CTCGACATCCACTGTGCCCACCACGTCGTCGTCGTCGACCGTCCCAACCT
CAGCATCCGCCACTTCACCCGCATCCTTCTCGTCAGTGCCTGTCCACACT
CGGTTACTATGGGCTTGCGGGCCTGCACCAGGCGCCGCCTCGCCTGAGCC
GCTCGCCGACATTGCCCCTTCGGCGCTCAGCTTGATTTCCACCATCTTCT
CCACATATTCCGTTAGCTCAGCTGGAACATGCATGTATTTCCCCTTCGTC
TTATTGTTCGTCTGCGGCGTCGCGCCGCTCTCAACAGCAACGGCGCGACT
CGCCGTCCCGTGCTGTCCCGCCTGCGATCGGGTCCCGGTGTACGGGCCTT
GCCACCTGGCCGTTGCCGGTGCTGGCGTCCGTGGCCCGACCGTCACAGTC
GGTCTCGAACCCTGCTGCCCTGCCCCAGAA
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