mRNA_H-paniculata_contig26701.7303.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26701.7303.1
Unique NamemRNA_H-paniculata_contig26701.7303.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26701.7303.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 7.670e-15
Identity = 50/128 (39.06%), Postives = 71/128 (55.47%), Query Frame = 1 
Query:  181 RSLCMDALDIVLTKSCSKRGGYLPMKTFQLVSLEMCMMCRNFSTLHVRMARDTPRRLWATSADQPSLSTSGRARQCRLRVSRVPLLRARAVTWTRSASAEFMSMDSYLLANVEYVKFGIRFNRSLEGV 564
            RS C+  L + L ++C  +  Y   K  QL SLE+CM CR++ TLH+ +   TPRRL A +AD PS          RL  +RVP LRAR  TW    +A  M    +   +V+Y++FG  F+ SL+ +
Sbjct:  133 RSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLA-AADAPSPHPK------RLCGTRVPRLRARRATWN-VPTASGMRTSIFATMDVDYLEFGQAFHGSLDAI 252
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BLAST of mRNA_H-paniculata_contig26701.7303.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.730e-13
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 1 
Query:  181 RSLCMDALDIVLTKSCSKRGGYLPMKTFQLVSLEMCMMCRNFSTLHVRMARDTPRRLWATSADQPSLSTSGRARQCRLRVSRVPLLRARAVTWTRSASAEFMSMDSYLLANVEYVKFG 534
            RS C++AL I L ++C+    Y   K  QL SLE C+ CRN+ TLH+++    PRRL A  AD P          CR   +RVP LRAR VTW    +AE +S+  + + +V+ +KFG
Sbjct:  110 RSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLAR-ADAPPPHPE---LLCR---TRVPRLRARRVTWGMRKAAE-LSIPIFAMTDVDCLKFG 219
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BLAST of mRNA_H-paniculata_contig26701.7303.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.780e-13
Identity = 44/128 (34.38%), Postives = 67/128 (52.34%), Query Frame = 1 
Query:  175 SGRSLCMDALDIVLTKSCSKRGGYLPMKTFQLVSLEMCMMCRNFSTLHVRMARDTPRRLWATSADQPSLSTSGRARQCRLRVSRVPLLRARAVTWTRSASAEFMSMDSYLLANVEYVKFGIRFNRSLE 558
            +G S C+DA  + L ++C   G Y+  +  QL SL  C+ CR+  T+H+++ R TP RL++   D  ++   G     R+  +RVP LRAR VTW    S E        L++VE    G   N S++
Sbjct:   25 AGPSRCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGDDDAAAVRDKGHGSSKRVMAARVPALRARKVTW--QLSGETPRCTGVGLSSVELFVLGDAVNDSMD 150
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BLAST of mRNA_H-paniculata_contig26701.7303.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.920e-10
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 1 
Query:  190 CMDALDIVLTKSCSKRGGYLPMKTFQLVSLEMCMMCRNFSTLHVRMARDTPRRLWATSADQPSLSTSGRARQCRLRVSRVPLLRARAVTWTRSASAEFMSMDSYLLANVEYVKFGIRFNRSLEGV 564
            C++A+ + L ++   +  Y   K  QL SLE CM CR + TLH+ +    PR L A +AD P       +R+      RVP LRAR VTW    +AE  S   + L +++++ FG  F  SLE V
Sbjct:   36 CLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLA-AADGPPQHPKRLSRR------RVPRLRARHVTWNMPTAAELRS-PIFALMDLDHLDFGSAFEGSLEAV 152
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BLAST of mRNA_H-paniculata_contig26701.7303.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.560e-6
Identity = 39/99 (39.39%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:  172 QSGRSLCMDALDIVLTKSCSKRGG--YLPMKTFQLVSLEMCMMCRNFSTLHVRMARDTPRRLWATSADQPSLSTSGRARQCRLR-VSRVPLLRARAVTW 459
            ++G S C+DAL I L ++    GG  Y      QL SLE+C  CR+   L + +   TP RLW  +A      T+   R  + R V+RVP++RAR VTW
Sbjct:    6 RAGPSRCLDALIIALNQAS---GGEWYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTA------TTRETRSVKRRNVTRVPVVRARTVTW 95
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BLAST of mRNA_H-paniculata_contig26701.7303.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.210e-6
Identity = 39/99 (39.39%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:  172 QSGRSLCMDALDIVLTKSCSKRGG--YLPMKTFQLVSLEMCMMCRNFSTLHVRMARDTPRRLWATSADQPSLSTSGRARQCRLR-VSRVPLLRARAVTW 459
            ++G S C+DAL I L ++    GG  Y      QL SLE+C  CR+   L + +   TP RLW  +A      T+   R  + R V+RVP++RAR VTW
Sbjct:   37 ETGPSRCLDALIIALNQAS---GGEWYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTA------TTRETRSVKRRNVTRVPVVRARTVTW 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26701.7303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KPY7_9PHAE7.670e-1539.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI1.730e-1341.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFC0_9PHAE1.780e-1334.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ4_9PHAE4.920e-1036.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT95_ECTSI1.560e-639.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA08_9PHAE2.210e-639.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26701contigH-paniculata_contig26701:799..2723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size564
Cds size564
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929801.910884-CDS-H-paniculata_contig26701:798..11841622929801.910884-CDS-H-paniculata_contig26701:798..1184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26701 799..1184 -
1691481017.1714914-CDS-H-paniculata_contig26701:798..11841691481017.1714914-CDS-H-paniculata_contig26701:798..1184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26701 799..1184 -
1622929801.9300408-CDS-H-paniculata_contig26701:2545..27231622929801.9300408-CDS-H-paniculata_contig26701:2545..2723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26701 2546..2723 -
1691481017.1807892-CDS-H-paniculata_contig26701:2545..27231691481017.1807892-CDS-H-paniculata_contig26701:2545..2723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26701 2546..2723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26701.7303.1prot_H-paniculata_contig26701.7303.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26701 799..2723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26701.7303.1

>prot_H-paniculata_contig26701.7303.1 ID=prot_H-paniculata_contig26701.7303.1|Name=mRNA_H-paniculata_contig26701.7303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
GLYGQSRCCSKSALYGLSSSQPLIRRCAFEGCTAFCTMYPVGSKAAAAGI
FQDEVDRQSGRSLCMDALDIVLTKSCSKRGGYLPMKTFQLVSLEMCMMCR
NFSTLHVRMARDTPRRLWATSADQPSLSTSGRARQCRLRVSRVPLLRARA
VTWTRSASAEFMSMDSYLLANVEYVKFGIRFNRSLEGV
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mRNA from alignment at H-paniculata_contig26701:799..2723-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26701.7303.1 ID=mRNA_H-paniculata_contig26701.7303.1|Name=mRNA_H-paniculata_contig26701.7303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1925bp|location=Sequence derived from alignment at H-paniculata_contig26701:799..2723- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTGTACGGCCAGTCAAGGTGTTGCAGCAAATCCGCACTGTACGGTCT
CTCATCGTCGCAGCCTCTGATACGTAGGTGTGCTTTTGAGGGCTGTACGG
CCTTCTGTACGATGTACCCCGTCGGATCGAAAGCGGCGGCAGCTGGCATC
TTTCAAGACGAGGTGGATAGACAATCGGGTGAGAGAGGCGCCAGACAGGT
CTTGACACTGTATGAATCTATCGATTTAGGATAGTATGTATCAACCGGCG
GTGATACGCTGACTGCCAAGGGCATGTCTGTGCCAAGTAATAGGGTGAGT
CCTCTGGGATTCTGAAGGTGTCTCATGATAGCTAAAATAATATTGAAAAA
CAGCACATTGTCTGATGGTATTAACGAAAATACAATAAACCGCCGGAGAT
CAAGTCACTGACATGAGACACATTTGACAGTGAAGAAAAGGTATGAGAAG
TAGGCTGTCCGTATCAAGAGACAGTTCATATTGTGGGACTCGCTACTAGT
TTTCCTTTTGATACCCGTACCGATGGAAATGCTGTTATTCTAATGAGTAG
AGAAATTAATAATGTTATCTCGGGACATAATTGCGCTATCCCCCGATTAT
TTGGTTGTCAGCTGTGCTCTTGACAGCTTCTGTCAAGGCGTGCTCGACTG
GCGTGTGTTTCGCGTATTCGCTTTTTCATTCTACCTTCGATATGTGGAAA
ATCTTCTAAAGTCACACTGGAATCGGTGTTGATTCAACAATAGTGTGAAC
GTGTTCAACCTATGCTCTAGCGCCCCCCCCCCCCCCCCAACGCCGTTGCA
GAACAATTAAACTCGTAGAAAGTAGCATGGTACGCGTTCTTCTATTTATG
AACAAGGATTCGGAATGTGAAAGGATTTTTGCAAAATTCGAACAGTCTGG
GCTAATTATTTTCGAAGTCACGGCGCTTTGACGGTTTTTGAAACACCTTA
CGCTGAGCAAGACGGAATTATCTCGGAACAACTCGCTGAACAAATTTGGA
GCGTACTCATGGTCGTAGTCCTCGGATATGAATGTTTCCGTTCCTCGCGC
GAGAGGGCTCAAACGATGTGCACAATTGTGAGGAGAAAACGTTCATTTGT
TTGATGACCTCTACACATGAATTTTCAGTGGTCGAGATGCTTGGTAAATA
GGCTGAGATAATTCAGAGTAGTTTAGTTTAGTGCTCACTTATGGTGCTGA
GGGTTTGGAAGCGAGATTTCGCCGAGACCATGATGTCGGCTACATTTCCA
AAAGCATGCAGTCGAAAGAGGAGCCAAGGCGGCCACTGACTATCGTACTA
GTAATTGTACCCATTGCGATCCAGCGGCGCTTGTCGCTGAGCAACCATGT
GAGACCGAGTTTTCGTCGCGTGAAACTATCTTTGTGGATGGACAGCGATA
GTAGAACTGCAGTGATGCTTGTGTACGGCGACACCGTATTTTGACTCCAG
TAATACTCGTGTTCGGCCATTGCACTGTTGGGCACAACTTCACTCGTACA
TGTGAACCAGCGATGATTGTTCGGTTGCCGTTGCTTCAGGCCGTAGCCTC
TGTATGGATGCCTTGGACATCGTGCTCACCAAGTCTTGCTCAAAGCGGGG
GGGTTACTTGCCCATGAAGACGTTTCAGCTGGTGTCTCTGGAGATGTGCA
TGATGTGCCGCAACTTCAGTACGCTACACGTGAGGATGGCGAGAGACACA
CCGCGACGACTGTGGGCGACTTCTGCCGATCAGCCATCGCTTTCGACGAG
CGGCAGAGCGCGGCAGTGCCGTTTGCGTGTGAGCCGCGTGCCGCTGTTGC
GGGCACGTGCGGTGACATGGACGAGGTCAGCTAGCGCCGAGTTTATGTCT
ATGGACAGCTATCTCTTGGCGAATGTGGAATACGTGAAATTCGGGATCAG
ATTCAACCGCAGTCTGGAGGGCGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig26701:799..2723-

>mRNA_H-paniculata_contig26701.7303.1 ID=mRNA_H-paniculata_contig26701.7303.1|Name=mRNA_H-paniculata_contig26701.7303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig26701:799..2723- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTGTACGGCCAGTCAAGGTGTTGCAGCAAATCCGCACTGTACGGTCT
CTCATCGTCGCAGCCTCTGATACGTAGGTGTGCTTTTGAGGGCTGTACGG
CCTTCTGTACGATGTACCCCGTCGGATCGAAAGCGGCGGCAGCTGGCATC
TTTCAAGACGAGGTGGATAGACAATCGGGGTCTGTACGGCCAGTCAAGGT
GTTGCAGCAAATCCGCACTGTACGGTCTCTCATCGTCGCAGCCTCTGATA
CGTAGGTGTGCTTTTGAGGGCTGTACGGCCTTCTGTACGATGTACCCCGT
CGGATCGAAAGCGGCGGCAGCTGGCATCTTTCAAGACGAGGTGGATAGAC
AATCGGGCCGTAGCCTCTGTATGGATGCCTTGGACATCGTGCTCACCAAG
TCTTGCTCAAAGCGGGGGGGTTACTTGCCCATGAAGACGTTTCAGCTGGT
GTCTCTGGAGATGTGCATGATGTGCCGCAACTTCAGTACGCTACACGTGA
GGATGGCGAGAGACACACCGCGACGACTGTGGGCGACTTCTGCCGATCAG
CCATCGCTTTCGACGAGCGGCAGAGCGCGGCAGTGCCGTTTGCGTGTGAG
CCGCGTGCCGCTGTTGCGGGCACGTGCGGTGACATGGACGAGGTCAGCTA
GCGCCGAGTTTATGTCTATGGACAGCTATCTCTTGGCGAATGTGGAATAC
GTGAAATTCGGGATCAGATTCAACCGCAGTCTGGAGGGCGTAGCCGTAGC
CTCTGTATGGATGCCTTGGACATCGTGCTCACCAAGTCTTGCTCAAAGCG
GGGGGGTTACTTGCCCATGAAGACGTTTCAGCTGGTGTCTCTGGAGATGT
GCATGATGTGCCGCAACTTCAGTACGCTACACGTGAGGATGGCGAGAGAC
ACACCGCGACGACTGTGGGCGACTTCTGCCGATCAGCCATCGCTTTCGAC
GAGCGGCAGAGCGCGGCAGTGCCGTTTGCGTGTGAGCCGCGTGCCGCTGT
TGCGGGCACGTGCGGTGACATGGACGAGGTCAGCTAGCGCCGAGTTTATG
TCTATGGACAGCTATCTCTTGGCGAATGTGGAATACGTGAAATTCGGGAT
CAGATTCAACCGCAGTCTGGAGGGCGTA
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