mRNA_H-paniculata_contig267.7298.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig267.7298.1
Unique NamemRNA_H-paniculata_contig267.7298.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig267.7298.1 vs. uniprot
Match: D8LS33_ECTSI (Conserved Cys-containing small protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS33_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 5.870e-25
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:   19 KKTEEEATLAQELSTCMFQHYKFFAAGVLLGLPLSVKNKSYWPFTFAAVAGSAADMIEAQKTCKPQQDALNACIARQKA 255
            ++++EEA LA ELS+CM  HYK+ AAGVLLGLPLSV  KSYWP T AAVAG+AAD  E    C+PQ++AL A IAR+ A
Sbjct:    3 EQSKEEAELAAELSSCMLSHYKYCAAGVLLGLPLSVHKKSYWPVTLAAVAGTAADFKEGTADCRPQREALMAFIARKNA 81
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BLAST of mRNA_H-paniculata_contig267.7298.1 vs. uniprot
Match: A0A0P1APA3_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APA3_PLAHL)

HSP 1 Score: 50.4 bits (119), Expect = 2.460e-5
Identity = 29/80 (36.25%), Postives = 42/80 (52.50%), Query Frame = 1 
Query:   19 KKTEEEATLAQELSTCMFQHYKFFA-AGVLLGLPLSVKNKSYWPFTFAAVAGSAADM-IEAQKTCKPQQDALNACIARQK 252
            K  E+ A L Q L++CM         AGVL+G+P+S+K KSY PF    V GS  D  I     C+   +A+   + ++K
Sbjct:   13 KGNEDSAQLQQMLTSCMINRQILCCIAGVLIGIPISIKRKSYTPFAILGVLGSFVDYSIPYTTDCRMIHNAMQLALQQEK 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig267.7298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS33_ECTSI5.870e-2563.29Conserved Cys-containing small protein n=1 Tax=Ect... [more]
A0A0P1APA3_PLAHL2.460e-536.25Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig267contigH-paniculata_contig267:25170..27038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved Cys-containing small protein
Ec32 orthologEc-08_001970.1
Exons3
Model size438
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig267.7298.1prot_H-paniculata_contig267.7298.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig267 25170..27038 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929801.3840253-CDS-H-paniculata_contig267:25169..254151622929801.3840253-CDS-H-paniculata_contig267:25169..25415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig267 25170..25415 -
1691481016.9499476-CDS-H-paniculata_contig267:25169..254151691481016.9499476-CDS-H-paniculata_contig267:25169..25415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig267 25170..25415 -
1622929801.397859-CDS-H-paniculata_contig267:25853..259611622929801.397859-CDS-H-paniculata_contig267:25853..25961Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig267 25854..25961 -
1691481016.9595447-CDS-H-paniculata_contig267:25853..259611691481016.9595447-CDS-H-paniculata_contig267:25853..25961Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig267 25854..25961 -
1622929801.415982-CDS-H-paniculata_contig267:26954..270381622929801.415982-CDS-H-paniculata_contig267:26954..27038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig267 26955..27038 -
1691481016.9690166-CDS-H-paniculata_contig267:26954..270381691481016.9690166-CDS-H-paniculata_contig267:26954..27038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig267 26955..27038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig267.7298.1

>prot_H-paniculata_contig267.7298.1 ID=prot_H-paniculata_contig267.7298.1|Name=mRNA_H-paniculata_contig267.7298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
MSSPFTKKTEEEATLAQELSTCMFQHYKFFAAGVLLGLPLSVKNKSYWPF
TFAAVAGSAADMIEAQKTCKPQQDALNACIARQKAFHQQEGGNQPVGADP
PELLPQQQDGEGDWPQHEWEGGFGKGEAAREEWVGGKEGRGRDKW*
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mRNA from alignment at H-paniculata_contig267:25170..27038-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig267.7298.1 ID=mRNA_H-paniculata_contig267.7298.1|Name=mRNA_H-paniculata_contig267.7298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1869bp|location=Sequence derived from alignment at H-paniculata_contig267:25170..27038- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTCGCCATTCACTAAAAAGACGGAAGAAGAGGCCACCTTGGCGCA
GGAGTTATCCACCTGCATGTTCCAGCACTACAAGGTTTGTGCACAAAGCT
CTCTTTACACTATTTACTAGTCACTACTGGAAATATTCCCATAGCGCATG
CCCTGCTCGATGGTACTACGCTGTACTGTACTGTTGCAAAGCTACTTCTA
GCTGTATGTGTAGCTAGAGCCAGTGCAGTACGTCTGTTATAGCTCGAATC
GCGCATGTAATTGCTGTCATCTCTCCCGAGTTGTGCGCGGTCTGTATTCC
GTCCAGAGATCGATGATGCCCCGCACTACTCCCGTGAGACCCTCCAAACA
GATATCAAAGACAAATGCACCTGGACCCCTGGCTTATTGTCGGAGTACGA
TTACAGTCTATGCTCGTTTTGCCCAATTCCTCTCTCCAAGGTTTACAACC
AGTCACTGGAGAGGCCTGACAGCAGTTCAAGATTTTTAGACCTCCCTGGC
TTTAATTAAAGCTCCCCAGAAGCAATGTGCACGAGACTGTTTTCAGTTTG
TATCGAAAGTGCTCACAGCAAAATTTGCAGCCAGAGCGCCATCGCCTACT
CTTTTTGTAGGAAGAAATAGTTGGCGTGGGAAGTTGTCAACATCAAGGCA
AGGTTCGACCTAGATGCCCTATGTCCTGTGCATTGTCTTTTATTCATTTC
AAACCCAGGTTTCCCTTTAGAATAATTACACAGCGCCCGGAGTTCAACTT
GCCCAGCACACACCAACCGCACAGTGAAAGTTTTCATGCGACAGCTGCAG
TGCGGCCTGGGCAAGGTCAGTTGTCCCTCTTTGTTCTCGAACAATAGCCA
TCGATGCCCGCAAGCTAGCAAAGCGGAAAATTGGGTGATACCAACAACGA
TCAGTTATGAAAAAATATTTGCAAATGTCGTGTAACGGATGGTGAAACTA
CACACCTGCCCTCCGGCTGTTGACTGGTGAGGTTGGCGTTTTTCCTCGGC
ATTTTTCTTCGCCGTCCACTTGTATTGGCAACATTCGATGTGTTTTTCGT
GGTTGTGTGTTTATTGGCTGAAACAAGTTCTTCGCGGCTGGAGTGTTGCT
GGGACTCCCTCTCAGCGTGAAGAACAAAAGTTATTGGCCCTTCACATTTG
CGGCGGTGGCGGGGTCGGCGGCGGATATGATTGAGGTATGAGGCCATGGT
TGGAGAATACGAAAGCTACAGCTTCCTTCTGAACCCAAGCGCGCGGGGGC
AGGGGGAAGGGGTCGTGCAAATCCCCCAGCCTGACTCACCTTGTACTGTA
TAGTGCTTACCTTGATACGCGTGGCTGGACCTTGTTTGTGAGGCGAACCA
GCACTCGCAAGTCCGCCAATACTTGACCAGCATCTGGCAAACTAGCTGGC
TACGAGTCGCACCGCCGCAGCGTCCCCCTGTACTTCACCTTCGCGCTGCG
TCGTGTTCGCGTCCCAAGACGTGACTCCCTCATATACGAGGACCCGTTCG
ATCATCACCCAAGTATCTATAGATGTCCCGTAAATACAGCATGGTACTCA
TTGTTTTGCGCCGCCTGTGCAACTTATATGATACCGCTTCGCTTATTCTT
GGTGCGCGCCCCATGAACGGTAGGCTCAGAAGACATGCAAGCCCCAACAA
GATGCGCTCAACGCATGCATCGCCCGACAGAAGGCATTTCATCAACAAGA
GGGTGGCAATCAACCAGTGGGCGCCGACCCCCCAGAGTTATTGCCCCAGC
AACAAGACGGGGAGGGGGATTGGCCACAGCATGAATGGGAGGGGGGCTTT
GGGAAGGGGGAAGCAGCAAGGGAAGAATGGGTGGGAGGGAAAGAGGGGAG
GGGAAGGGATAAATGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig267:25170..27038-

>mRNA_H-paniculata_contig267.7298.1 ID=mRNA_H-paniculata_contig267.7298.1|Name=mRNA_H-paniculata_contig267.7298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig267:25170..27038- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTCGCCATTCACTAAAAAGACGGAAGAAGAGGCCACCTTGGCGCA
GGAGTTATCCACCTGCATGTTCCAGCACTACAAGATGAGCTCGCCATTCA
CTAAAAAGACGGAAGAAGAGGCCACCTTGGCGCAGGAGTTATCCACCTGC
ATGTTCCAGCACTACAAGTTCTTCGCGGCTGGAGTGTTGCTGGGACTCCC
TCTCAGCGTGAAGAACAAAAGTTATTGGCCCTTCACATTTGCGGCGGTGG
CGGGGTCGGCGGCGGATATGATTGAGTTCTTCGCGGCTGGAGTGTTGCTG
GGACTCCCTCTCAGCGTGAAGAACAAAAGTTATTGGCCCTTCACATTTGC
GGCGGTGGCGGGGTCGGCGGCGGATATGATTGAGGCTCAGAAGACATGCA
AGCCCCAACAAGATGCGCTCAACGCATGCATCGCCCGACAGAAGGCATTT
CATCAACAAGAGGGTGGCAATCAACCAGTGGGCGCCGACCCCCCAGAGTT
ATTGCCCCAGCAACAAGACGGGGAGGGGGATTGGCCACAGCATGAATGGG
AGGGGGGCTTTGGGAAGGGGGAAGCAGCAAGGGAAGAATGGGTGGGAGGG
AAAGAGGGGAGGGGAAGGGATAAATGGTAAGCTCAGAAGACATGCAAGCC
CCAACAAGATGCGCTCAACGCATGCATCGCCCGACAGAAGGCATTTCATC
AACAAGAGGGTGGCAATCAACCAGTGGGCGCCGACCCCCCAGAGTTATTG
CCCCAGCAACAAGACGGGGAGGGGGATTGGCCACAGCATGAATGGGAGGG
GGGCTTTGGGAAGGGGGAAGCAGCAAGGGAAGAATGGGTGGGAGGGAAAG
AGGGGAGGGGAAGGGATAAATGGTAA
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