mRNA_H-paniculata_contig2668.7289.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2668.7289.1
Unique NamemRNA_H-paniculata_contig2668.7289.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2668.7289.1 vs. uniprot
Match: UPI001026D7DE (hypothetical protein n=1 Tax=Enterobacter cloacae complex sp. CH23B TaxID=2511986 RepID=UPI001026D7DE)

HSP 1 Score: 58.2 bits (139), Expect = 1.470e-8
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   16 RFKLKDLGDAEFYMGCHVTRERKARELKVDQHMYRQSMAEKFGVK--KTSRIPAMSGVPTLSKGDQQKTPEEKDEMTKFPYREAMGAL 273
            +F +KDLGDA  ++G H+ R+RK   L++ Q  Y   + ++F ++  K+   P M     LSK D  KT  EK+EM K PY   +G L
Sbjct:   45 QFSMKDLGDANHFLGMHIKRDRKRGILELSQEKYIHKVLKRFSMQGGKSLSTP-MQAYSKLSKEDSPKTVAEKEEMAKVPYSSVVGNL 131          
BLAST of mRNA_H-paniculata_contig2668.7289.1 vs. uniprot
Match: A0A5A7VE22_CUCME (Gag/pol protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7VE22_CUCME)

HSP 1 Score: 57.4 bits (137), Expect = 1.420e-7
Identity = 32/87 (36.78%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   19 FKLKDLGDAEFYMGCHVTRERKARELKVDQHMYRQSMAEKFGVKKTSR--IPAMSGVPTLSKGDQQKTPEEKDEMTKFPYREAMGAL 273
            F++KDLGDA++ +G  + R RK+R L + Q  Y   M  ++ ++ + +  +    G+  LSK    KTP+E ++M KFPY  A+G+L
Sbjct:  102 FQMKDLGDAQYVLGIQIVRNRKSRTLAMSQASYIDKMLSRYKMQNSKKGLLLYRYGI-HLSKKQCPKTPQEVEDMRKFPYASAVGSL 187          
BLAST of mRNA_H-paniculata_contig2668.7289.1 vs. uniprot
Match: A0A5S6QMP8_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QMP8_TRIMR)

HSP 1 Score: 56.6 bits (135), Expect = 2.380e-7
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 1
Query:   16 RFKLKDLGDAEFYMGCHVTRERKARELKVDQHMYRQSMAEKFGVK--KTSRIPAMSGVPTLSKGDQQKTPEEKDEMTKFPYREAMGAL 273
            +F++KDLG+A + +G  +  +++ + L +DQ  +   M E FG+   K ++ P  S    LSK    KT +E+ EM K PYREA+G L
Sbjct:  222 QFEMKDLGEAHWCLGMRIVCDKEHKRLSIDQERHIDQMLETFGMTDCKVAKTPLDSNQ-VLSKDMAPKTEDERTEMQKVPYREAVGCL 308          
BLAST of mRNA_H-paniculata_contig2668.7289.1 vs. uniprot
Match: A0A6A3IVK9_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IVK9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.990e-7
Identity = 31/87 (35.63%), Postives = 48/87 (55.17%), Query Frame = 1
Query:   16 RFKLKDLGDAEFYMGCHVTRERKARELKVDQHMYRQSMAEKFGVKKTSRIPAMSGVPT-LSKGDQQKTPEEKDEMTKFPYREAMGAL 273
            RF++ DLG   + +G H+ R R  R + V Q  Y   + ++FG+ +   + +       LS+ D  +T EEK  M KFPYREA+G+ 
Sbjct:   53 RFQMADLGGVSYPLGWHIERRRSERIIFVHQEKYATKVLDRFGLAQCRPVRSPEETSQKLSESDFPQTEEEKQNMEKFPYREAVGSF 139          
BLAST of mRNA_H-paniculata_contig2668.7289.1 vs. uniprot
Match: A0A6A3HS58_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3HS58_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.260e-6
Identity = 30/87 (34.48%), Postives = 48/87 (55.17%), Query Frame = 1
Query:   16 RFKLKDLGDAEFYMGCHVTRERKARELKVDQHMYRQSMAEKFGVKKTSRIPAMSGVPT-LSKGDQQKTPEEKDEMTKFPYREAMGAL 273
            RF++ DLG   + +G H+ R R  R + V Q  Y   + ++FG+ +   + +       LS+ D  +T  EK +M KFPYREA+G+ 
Sbjct:  393 RFQMTDLGGVSYLLGWHIERRRSERIIFVHQEKYATKVLDRFGLAQCRPVRSPEETSQKLSESDCPQTDAEKQDMEKFPYREAVGSF 479          
BLAST of mRNA_H-paniculata_contig2668.7289.1 vs. uniprot
Match: A0A6A4BXP3_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BXP3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.290e-6
Identity = 30/87 (34.48%), Postives = 48/87 (55.17%), Query Frame = 1
Query:   16 RFKLKDLGDAEFYMGCHVTRERKARELKVDQHMYRQSMAEKFGVKKTSRIPAMSGVPT-LSKGDQQKTPEEKDEMTKFPYREAMGAL 273
            RF++ DLG   + +G H+ R R  R + V Q  Y   + ++FG+ +   + +       LS+ D  +T  EK +M KFPYREA+G+ 
Sbjct:  946 RFQMTDLGGVSYLLGWHIERRRSERIIFVHQEKYATKVLDRFGLAQCRPVRSPEETSQKLSESDCPQTDAEKQDMEKFPYREAVGSF 1032          
BLAST of mRNA_H-paniculata_contig2668.7289.1 vs. uniprot
Match: A0A085MVP5_9BILA (Uncharacterized protein n=2 Tax=Trichuris suis TaxID=68888 RepID=A0A085MVP5_9BILA)

HSP 1 Score: 54.3 bits (129), Expect = 1.760e-6
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 1
Query:   16 RFKLKDLGDAEFYMGCHVTRERKARELKVDQHMYRQSMAEKFGVK--KTSRIPAMSGVPTLSKGDQQKTPEEKDEMTKFPYREAMGAL 273
            +F++KDLG A + +G  + +++K   L +DQ  Y   + E FG+   K ++ P +     LSK    KT EE+ EM K PYREA+G++
Sbjct: 1025 QFEMKDLGKAHWCLGIRINQDKKFGTLSIDQARYIDQILETFGMVDCKVAKTP-LDPNQLLSKEMSPKTEEERMEMKKIPYREAVGSV 1111          
BLAST of mRNA_H-paniculata_contig2668.7289.1 vs. uniprot
Match: A0A6G0PJV2_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0PJV2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.300e-6
Identity = 30/87 (34.48%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   16 RFKLKDLGDAEFYMGCHVTRERKARELKVDQHMYRQSMAEKFGVKKTSRIPAMSGVPT-LSKGDQQKTPEEKDEMTKFPYREAMGAL 273
            RF++ DLG   + +G H+ R R  R + V Q  Y   + ++FG+ +   + +       LS+ D  +T  EK  M KFPYREA+G+ 
Sbjct:  201 RFQMTDLGGVSYLLGWHIERRRSERIIFVHQEKYATKVLDRFGLAQCRPVRSPEETSQKLSESDCPQTDAEKQNMEKFPYREAVGSF 287          
BLAST of mRNA_H-paniculata_contig2668.7289.1 vs. uniprot
Match: A0A6A3JRU5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JRU5_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 7.740e-6
Identity = 29/87 (33.33%), Postives = 46/87 (52.87%), Query Frame = 1
Query:   16 RFKLKDLGDAEFYMGCHVTRERKARELKVDQHMYRQSMAEKFGVKKTSRIPAMSGVP-TLSKGDQQKTPEEKDEMTKFPYREAMGAL 273
            RF++ DLG     +G H+ R R    + V Q  Y   +  +FG+ +   + +      TLS+ D  +T  EK ++ KFPYREA+G+ 
Sbjct:   30 RFQMIDLGGVSSLLGWHIERRRSEHVIFVHQEKYATKVLNRFGLAQCRPVRSPEETSQTLSESDCPQTDAEKQDIEKFPYREAVGSF 116          
BLAST of mRNA_H-paniculata_contig2668.7289.1 vs. uniprot
Match: A0A6A3GWX5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GWX5_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.090e-5
Identity = 32/89 (35.96%), Postives = 47/89 (52.81%), Query Frame = 1
Query:   16 RFKLKDLGDAEFYMGCHVTRERKARELKVDQHMYRQSMAEKFGVKKTSRIPAMSGVPT---LSKGDQQKTPEEKDEMTKFPYREAMGAL 273
            RF++ DLG   + +G H+ R R  R + V Q  Y   + ++  + +    P  S   T   LS+ D  +T  EK EM KFPYREA+G+ 
Sbjct:  291 RFQMTDLGGVSYLLGWHIERRRSERIIFVHQEKYTTKVLDRISLDQCR--PVRSSEETSQKLSESDCPQTDAEKQEMEKFPYREAVGSF 377          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2668.7289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
UPI001026D7DE1.470e-838.64hypothetical protein n=1 Tax=Enterobacter cloacae ... [more]
A0A5A7VE22_CUCME1.420e-736.78Gag/pol protein n=2 Tax=Cucumis melo var. makuwa T... [more]
A0A5S6QMP8_TRIMR2.380e-737.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3IVK9_9STRA4.990e-735.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3HS58_9STRA1.260e-634.48Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A4BXP3_9STRA1.290e-634.48Retrovirus-related Pol polyprotein from transposon... [more]
A0A085MVP5_9BILA1.760e-637.50Uncharacterized protein n=2 Tax=Trichuris suis Tax... [more]
A0A6G0PJV2_9STRA2.300e-634.48Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3JRU5_9STRA7.740e-633.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3GWX5_9STRA1.090e-535.96Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2668contigH-paniculata_contig2668:10214..10486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.6
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog2711.XP_006471604.1
KEGG rclassRC00478,RC00661
KEGG koko:K04125
KEGG ReactionR03008,R03809,R06337,R06338
KEGG Pathwayko00904,ko01110,map00904,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008300,GO:0009056,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009685,GO:0009987,GO:0010817,GO:0016042,GO:0016054,GO:0016101,GO:0016103,GO:0016115,GO:0016491,GO:0016705,GO:0016706,GO:0019752,GO:0042445,GO:0042447,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0045487,GO:0045543,GO:0046395,GO:0050896,GO:0051213,GO:0052634,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:1901575
EggNOG free text desc.Belongs to the iron ascorbate-dependent oxidoreductase family
EggNOG OGs37R49@33090,3G77N@35493,COG2801@1,COG3491@1,KOG0017@2759,KOG0143@2759
EC1.14.11.13
COG Functional cat.Q
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929800.1826015-CDS-H-paniculata_contig2668:10213..104861622929800.1826015-CDS-H-paniculata_contig2668:10213..10486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2668 10214..10486 -
1691481016.3076396-CDS-H-paniculata_contig2668:10213..104861691481016.3076396-CDS-H-paniculata_contig2668:10213..10486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2668 10214..10486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2668.7289.1prot_H-paniculata_contig2668.7289.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2668 10214..10486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2668.7289.1

>prot_H-paniculata_contig2668.7289.1 ID=prot_H-paniculata_contig2668.7289.1|Name=mRNA_H-paniculata_contig2668.7289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
TQPGGRFKLKDLGDAEFYMGCHVTRERKARELKVDQHMYRQSMAEKFGVK
KTSRIPAMSGVPTLSKGDQQKTPEEKDEMTKFPYREAMGAL
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mRNA from alignment at H-paniculata_contig2668:10214..10486-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2668.7289.1 ID=mRNA_H-paniculata_contig2668.7289.1|Name=mRNA_H-paniculata_contig2668.7289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig2668:10214..10486- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCAGCCAGGAGGAAGGTTCAAGCTGAAGGACTTGGGTGACGCTGAGTT CTATATGGGTTGTCACGTTACTCGAGAAAGGAAGGCGCGCGAGCTGAAAG TCGATCAACACATGTACAGACAGTCGATGGCGGAAAAATTCGGTGTCAAG AAGACGAGTAGGATACCAGCCATGTCCGGAGTACCAACACTATCAAAAGG AGACCAACAAAAGACCCCGGAGGAGAAGGACGAGATGACGAAATTTCCAT ATCGAGAGGCAATGGGGGCGCTA
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Coding sequence (CDS) from alignment at H-paniculata_contig2668:10214..10486-

>mRNA_H-paniculata_contig2668.7289.1 ID=mRNA_H-paniculata_contig2668.7289.1|Name=mRNA_H-paniculata_contig2668.7289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig2668:10214..10486- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCAGCCAGGAGGAAGGTTCAAGCTGAAGGACTTGGGTGACGCTGAGTT
CTATATGGGTTGTCACGTTACTCGAGAAAGGAAGGCGCGCGAGCTGAAAG
TCGATCAACACATGTACAGACAGTCGATGGCGGAAAAATTCGGTGTCAAG
AAGACGAGTAGGATACCAGCCATGTCCGGAGTACCAACACTATCAAAAGG
AGACCAACAAAAGACCCCGGAGGAGAAGGACGAGATGACGAAATTTCCAT
ATCGAGAGGCAATGGGGGCGCTAACCCAGCCAGGAGGAAGGTTCAAGCTG
AAGGACTTGGGTGACGCTGAGTTCTATATGGGTTGTCACGTTACTCGAGA
AAGGAAGGCGCGCGAGCTGAAAGTCGATCAACACATGTACAGACAGTCGA
TGGCGGAAAAATTCGGTGTCAAGAAGACGAGTAGGATACCAGCCATGTCC
GGAGTACCAACACTATCAAAAGGAGACCAACAAAAGACCCCGGAGGAGAA
GGACGAGATGACGAAATTTCCATATCGAGAGGCAATGGGGGCGCTA
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