mRNA_H-paniculata_contig26641.7280.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26641.7280.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE) HSP 1 Score: 265 bits (678), Expect = 8.650e-81 Identity = 130/247 (52.63%), Postives = 164/247 (66.40%), Query Frame = 1
Query: 1 IPRNEHALQARLMVCAEMQEAGHRGVDATVNRLAAYCMWDEMEANVAEFVRQCLHCLNVRSASRVPRSLGELLHGADVGGVLHFDLLHLGASDPLKEHEVIRG-GCPYLLVLLDDVNDHVWLEAALECTAKVAAATVLRWCTVFGAPGVFVSNTARNVKNRLVSLLATALGAEHRFCVANSAWSNGTVERMNREVVNTFKAVLNEADRPVSEWPVAVPVVQWALNPAHRARLGTTPHQLMFGRAPRT 738
IP +Q RLM+CA M+EAGHRGV AT++RL YC W M+ +V EFV+QCLHC++ +S VPR GE +HG G VLHFD LH+G S PL + G YLLV++DD+++ W+E CTA++ A +L WC G P V+VS+TA + KN ++ L ALG E RF VANS WSNGT ERM RE+V T KAVL E R V +W VP VQWALN A+R R +TP+ +MFGRAPRT
Sbjct: 407 IPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRT 653
BLAST of mRNA_H-paniculata_contig26641.7280.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 266 bits (679), Expect = 5.780e-78 Identity = 129/248 (52.02%), Postives = 168/248 (67.74%), Query Frame = 1
Query: 1 IPRNEHALQARLMVCAEMQEAGHRGVDATVNRLAAYCMWDEMEANVAEFVRQCLHCLNVRSASRVPRSLGELLHGADVGGVLHFDLLHLGASDPLKEHEVIRG-GCPYLLVLLDDVNDHVWLEAALECTAKVAAATVLRWCTVFGAPGVFVSNTARNVKNRLVSLLATALGAEHRFCVANSAWSNGTVERMNREVVNTFKAVLNEADRPVSEWPVAVPVVQWALNPAHRARLGTTPHQLMFGRAPRTV 741
IP ALQ RLMVCA M+EAGHRG AT+ RL+ YC W ME +V +FV+QCLHC++ ++ +VPR LGE +HG G V+HFD L++GAS PL + + G Y+LV++DD+++ VWLE CTA + A +L WC + G P V+VS+TA + KN +++ L TALG + F VANS WSNGT ERM REVV T KA++ E +W VP VQWALN A R R G+TP+ +MFGRAPRT
Sbjct: 1285 IPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYGSTPYHVMFGRAPRTA 1532
BLAST of mRNA_H-paniculata_contig26641.7280.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 265 bits (678), Expect = 7.790e-78 Identity = 130/247 (52.63%), Postives = 164/247 (66.40%), Query Frame = 1
Query: 1 IPRNEHALQARLMVCAEMQEAGHRGVDATVNRLAAYCMWDEMEANVAEFVRQCLHCLNVRSASRVPRSLGELLHGADVGGVLHFDLLHLGASDPLKEHEVIRG-GCPYLLVLLDDVNDHVWLEAALECTAKVAAATVLRWCTVFGAPGVFVSNTARNVKNRLVSLLATALGAEHRFCVANSAWSNGTVERMNREVVNTFKAVLNEADRPVSEWPVAVPVVQWALNPAHRARLGTTPHQLMFGRAPRT 738
IP +Q RLM+CA M+EAGHRGV AT++RL YC W M+ +V EFV+QCLHC++ +S VPR GE +HG G VLHFD LH+G S PL + G YLLV++DD+++ W+E CTA++ A +L WC G P V+VS+TA + KN ++ L ALG E RF VANS WSNGT ERM RE+V T KAVL E R V +W VP VQWALN A+R R +TP+ +MFGRAPRT
Sbjct: 1183 IPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRT 1429
BLAST of mRNA_H-paniculata_contig26641.7280.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 216 bits (550), Expect = 1.080e-64 Identity = 107/206 (51.94%), Postives = 136/206 (66.02%), Query Frame = 1
Query: 124 MEANVAEFVRQCLHCLNVRSASRVPRSLGELLHGADVGGVLHFDLLHLGASDPLKEHEVIRG-GCPYLLVLLDDVNDHVWLEAALECTAKVAAATVLRWCTVFGAPGVFVSNTARNVKNRLVSLLATALGAEHRFCVANSAWSNGTVERMNREVVNTFKAVLNEADRPVSEWPVAVPVVQWALNPAHRARLGTTPHQLMFGRAPRT 738
M+ +V EFV+QCLHC++ +S VPR GE +HG G VLHFD LH+G S PL + G YLLV++DD+++ W+E CTA++ A +L WC G P V+VS+TA + KN ++ L ALG E RF VANS WSNGT ERM REVV T KAVL E R + +W VP VQWALN A+R R +TP+ +MFGRAPRT
Sbjct: 1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRT 206
BLAST of mRNA_H-paniculata_contig26641.7280.1 vs. uniprot
Match: A0A6A3VH71_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VH71_9STRA) HSP 1 Score: 133 bits (335), Expect = 9.250e-33 Identity = 80/242 (33.06%), Postives = 118/242 (48.76%), Query Frame = 1
Query: 1 IPRNEHALQARLMVCAEMQEAGHRGVDATVNRLAAYCMWDEMEANVAEFVRQCLHCLNVRSASRVPRSLGELLHGADVGGVLHFDLLHLGASDPLKEHEVIRGGCPYLLVLLDDVNDHVWLEAALECTAKVAAATVLRWCTVFGAPGVFVSNTARNVKNRLVSLLATALGAEHRFCVANSAWSNGTVERMNREVVNTFKAVLNEADRPVSEWPVAVPVVQWALNPAHRARLGT-TPHQLMFG 723
IP L RL + A GHRG AT L + ++ VA FVRQC CL+ + + +PR GE L ++ GVLHFD L +G S G Y+LVL D + + L A + V +L W FG P ++S+ N KN +V+ L+ L ++ F A W NG+VER+NR+++ + ++ E ++WP +P+VQ +LN LG P +L G
Sbjct: 113 IPAEAAGLLQRLFIIAHCGAQGHRGGAATAEHLRRLFAIEHLDTKVAAFVRQCRLCLHSKGGNIIPRPWGETLECSERNGVLHFDYLSMGES---------FGDSKYILVLKDHASHYCELVVADTADSSVTVEALLAWHARFGVPPTWISDQGSNFKNEVVAELSRRLRSQQEFTPAYCPWINGSVERVNRDILQVIRTMILEYKINHTDWPYLMPMVQASLNHTAVPSLGNKAPVELFTG 345
BLAST of mRNA_H-paniculata_contig26641.7280.1 vs. uniprot
Match: A0A6A3XKC0_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3XKC0_9STRA) HSP 1 Score: 132 bits (333), Expect = 1.380e-32 Identity = 76/224 (33.93%), Postives = 117/224 (52.23%), Query Frame = 1
Query: 1 IPRNEHALQARLMVCAEMQEAGHRGVDATVNRLAAYCMWDEMEANVAEFVRQCLHCLNVRSASRVPRSLGELLHGADVGGVLHFDLLHLGASDPLKEHEVIRGGCPYLLVLLDDVNDHVWLEAALECTAKVAAATVLRWCTVFGAPGVFVSNTARNVKNRLVSLLATALGAEHRFCVANSAWSNGTVERMNREVVNTFKAVLNEADRPVSEWPVAVPVVQWALN 672
IPR L RL++ A GHRGV N ++ + V +F +CL CL+V+ + +PR E H + LH+D L LG S G Y+LVL D+ V L A + T+ VAA +L W + FGAP V+VS++ + K+++++ L L F +A S W NG+VER+NR+++ KA+ E + +WP +P+VQ ++N
Sbjct: 123 IPREARDLTQRLLIIAHCGRNGHRGVHVMENLVSRLFYISGLNRIVRDFCVKCLLCLHVKGGTVIPRPFSETHHTFERNETLHWDFLTLGES---------FGSSHYVLVLKDEATHFVELVACDDPTSAVAATAILDWYSRFGAPIVWVSDSGSHFKSKVIAELCRRLKGRQEFILAYSPWKNGSVERVNRDILQVLKALALEFRVSLQDWPHLLPLVQSSIN 337
BLAST of mRNA_H-paniculata_contig26641.7280.1 vs. uniprot
Match: A0A0G4J7H8_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J7H8_PLABS) HSP 1 Score: 135 bits (339), Expect = 2.000e-32 Identity = 74/243 (30.45%), Postives = 120/243 (49.38%), Query Frame = 1
Query: 19 ALQARLMVCAEMQEAGHRGVDATVNRLAAYCMWDEMEANVAEFVRQCLHCLNVRSASRVPRSLGELLHGADVGGVLHFDLLHL----GASDPLKEHEVIRGGCPYLLVLLDDVNDHVWLEAALECTAKVAAATVLRWCTVFGAPGVFVSNTARNVKNRLVSLLATALGAEHRFCVANSAWSNGTVERMNREVVNTFKAVLNEADRPVSEWPVAVPVVQWALNPAHRARL-GTTPHQLMFGRAP 732
+L+ R+++ AGHR + + + W +++ +V + +QC+HC+ R +VPR LGE LHG V+ D L++ G P K Y+LV+ DD + +V L T++ AA + +W F P V++ + ++ L+ +H +A W+NGTVER NR V+N +++L+EA WP PVVQ A+N A RL G P+ ++ G P
Sbjct: 701 SLRLRILIIGHSGSAGHRASEVAKQTIMSRFCWPDIDKDVEQMCQQCIHCITTRGGRKVPRPLGEALHGQRPFQVMAMDYLYVEPVRGTDHPYK----------YILVMKDDYSGYVRLVPCQGATSRAAADAINQWIADFETPEYLVTDGGSHFTAEVIKELSRLREIQHHITLAYCPWANGTVERANRTVLNMLRSILSEAQISTHNWPYLCPVVQHAINHAPSKRLAGNAPYTVITGNQP 933
BLAST of mRNA_H-paniculata_contig26641.7280.1 vs. uniprot
Match: A0A6A3GZ49_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GZ49_9STRA) HSP 1 Score: 130 bits (328), Expect = 1.680e-31 Identity = 75/224 (33.48%), Postives = 115/224 (51.34%), Query Frame = 1
Query: 1 IPRNEHALQARLMVCAEMQEAGHRGVDATVNRLAAYCMWDEMEANVAEFVRQCLHCLNVRSASRVPRSLGELLHGADVGGVLHFDLLHLGASDPLKEHEVIRGGCPYLLVLLDDVNDHVWLEAALECTAKVAAATVLRWCTVFGAPGVFVSNTARNVKNRLVSLLATALGAEHRFCVANSAWSNGTVERMNREVVNTFKAVLNEADRPVSEWPVAVPVVQWALN 672
IP L RL++ A GHRG+ N + ++ V +F +CL CL+V+ +PR E H + LH+D L LG S G Y LVL D+ V L A T++VAA+ +L W + FG P V+VS+T + K+++++ L+ L F +A S W NG+VER+NR+++ KA+ E V +WP +P+VQ ++N
Sbjct: 177 IPSEATDLTQRLLIIAHCGRNGHRGMHVMQNHIRRLFYVGGLDRIVKDFCAKCLLCLHVKGGVVIPRPFSETHHTFERNETLHWDFLTLGES---------FGTSRYALVLKDEATHFVDLVACDSSTSEVAASAILDWYSRFGVPTVWVSDTGSHFKSKVIAELSRRLKGRQEFILAYSPWKNGSVERVNRDILQVLKALALEFKVSVHDWPYLLPLVQSSVN 391
BLAST of mRNA_H-paniculata_contig26641.7280.1 vs. uniprot
Match: A0A6A3KUK3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KUK3_9STRA) HSP 1 Score: 130 bits (327), Expect = 3.810e-31 Identity = 75/224 (33.48%), Postives = 116/224 (51.79%), Query Frame = 1
Query: 1 IPRNEHALQARLMVCAEMQEAGHRGVDATVNRLAAYCMWDEMEANVAEFVRQCLHCLNVRSASRVPRSLGELLHGADVGGVLHFDLLHLGASDPLKEHEVIRGGCPYLLVLLDDVNDHVWLEAALECTAKVAAATVLRWCTVFGAPGVFVSNTARNVKNRLVSLLATALGAEHRFCVANSAWSNGTVERMNREVVNTFKAVLNEADRPVSEWPVAVPVVQWALN 672
IPR L RL++ A GHRGV N ++ + V +F +CL CL+V+ + +PR E H + LH+D L L S G Y+LVL D+ V L A + T+ VAA +L W + FGAP V+VS++ + K+++++ L L F +A S W NG+VER+NR+++ KA+ E + +WP +P+VQ ++N
Sbjct: 123 IPREARDLTQRLLIIAHCGRNGHRGVHVMENHVSRLFYISGLNRIVRDFCVKCLLCLHVKGGTVIPRPFSETHHTFERNETLHWDFLTLDES---------FGSSRYVLVLKDEATHFVELVACDDPTSAVAATAILDWYSRFGAPIVWVSDSGSHFKSKVIAELCRRLKRRQEFILAYSPWKNGSVERVNRDILQVLKALALEFRVSLQDWPHLLPLVQSSIN 337
BLAST of mRNA_H-paniculata_contig26641.7280.1 vs. uniprot
Match: A0A485LNJ2_9STRA (Aste57867_23616 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNJ2_9STRA) HSP 1 Score: 131 bits (329), Expect = 4.520e-31 Identity = 82/248 (33.06%), Postives = 117/248 (47.18%), Query Frame = 1
Query: 1 IPRNEHALQARLMVCAEMQEAGHRGVDATVNRLAAYCMWDEMEANVAEFVRQCLHCLNVRSASRVPRSLGELLHGADVGGVLHFDLLHLGAS-DPLKEHEVIRGGCPYLLVLLDDVNDHVWLEAALECTAKVAAATVLRWCTVFGAPGVFVSNTARNVKNRLVSLLATALGAEHRFCVANSAWSNGTVERMNREVVNTFKAVLNEADRPVSEWPVAVPVVQWALNPAHRARL-GTTPHQLMFGRAPRT 738
IPR+ L R++V A GHRG D + L D ++ V FVR+C C V+ + R EL H LHFD L +G S P+K Y+LVL DD+ L A TA V +L W FG P ++S+ + KN ++ +A L +H+F + S W NGT+ER+NR+++ + +L E EW +PVVQ LN A L G P + + P+T
Sbjct: 965 IPRDATCLIQRMLVIAHCGSMGHRGEDVMYSHLRRQFWIDNLKQLVQHFVRECPMCPLVKGERVIQRPHSELWHAERANEGLHFDFLFMGDSFGPMK----------YILVLKDDLTHFCELIACEAPTADVVVTALLDWHKRFGIPETWISDQGSHFKNHVMKTVAAKLKVDHKFTITYSPWRNGTIERLNRDILQVMRVLLKEYHLDEREWEYLLPVVQANLNQTPTASLRGKCPMEAFCLKPPKT 1202 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26641.7280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26641.7280.1 >prot_H-paniculata_contig26641.7280.1 ID=prot_H-paniculata_contig26641.7280.1|Name=mRNA_H-paniculata_contig26641.7280.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=247bp IPRNEHALQARLMVCAEMQEAGHRGVDATVNRLAAYCMWDEMEANVAEFVback to top mRNA from alignment at H-paniculata_contig26641:2403..3143+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26641.7280.1 ID=mRNA_H-paniculata_contig26641.7280.1|Name=mRNA_H-paniculata_contig26641.7280.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=741bp|location=Sequence derived from alignment at H-paniculata_contig26641:2403..3143+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26641:2403..3143+ >mRNA_H-paniculata_contig26641.7280.1 ID=mRNA_H-paniculata_contig26641.7280.1|Name=mRNA_H-paniculata_contig26641.7280.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1482bp|location=Sequence derived from alignment at H-paniculata_contig26641:2403..3143+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |