mRNA_H-paniculata_contig26630.7276.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26630.7276.1
Unique NamemRNA_H-paniculata_contig26630.7276.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26630.7276.1 vs. uniprot
Match: A0A6H5KNC7_9PHAE (Centrosomal protein of 162 kDa (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC7_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.020e-11
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:  364 VLELRAAMANERRAAAAKDLEISENMRRRLEEEVLDLRAKLSKPSTPSQLKHMELSRKV 540
            VLEL AA+A ER+AAAAKDLE SE+MRR LE EVL LR KL++PSTPSQ K+M LS+KV
Sbjct:  579 VLELEAAVAKERQAAAAKDLERSEDMRRMLEAEVLGLRTKLNEPSTPSQAKYMNLSKKV 637
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BLAST of mRNA_H-paniculata_contig26630.7276.1 vs. uniprot
Match: D8LRE4_ECTSI (Centrosomal protein of 162 kDa n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE4_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.080e-8
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:  388 ANERRAAAAKDLEISENMRRRLEEEVLDLRAKLSKPSTPSQLKHMELSRKV 540
            A ER+AAAAKDLE SE+MRR LE EVL LR +L++PSTPSQ K+M+LS+KV
Sbjct:  355 AKERQAAAAKDLERSEDMRRMLEAEVLGLRTRLNEPSTPSQAKYMDLSKKV 405
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26630.7276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNC7_9PHAE1.020e-1172.88Centrosomal protein of 162 kDa (Fragment) n=1 Tax=... [more]
D8LRE4_ECTSI1.080e-870.59Centrosomal protein of 162 kDa n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26630contigH-paniculata_contig26630:301..2587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_002780.1
Exons3
Model size540
Cds size537
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26630.7276.1prot_H-paniculata_contig26630.7276.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26630 301..2584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929798.878363-CDS-H-paniculata_contig26630:300..4051622929798.878363-CDS-H-paniculata_contig26630:300..405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26630 301..405 -
1691481015.8011718-CDS-H-paniculata_contig26630:300..4051691481015.8011718-CDS-H-paniculata_contig26630:300..405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26630 301..405 -
1622929798.8896072-CDS-H-paniculata_contig26630:1463..17871622929798.8896072-CDS-H-paniculata_contig26630:1463..1787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26630 1464..1787 -
1691481015.8117738-CDS-H-paniculata_contig26630:1463..17871691481015.8117738-CDS-H-paniculata_contig26630:1463..1787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26630 1464..1787 -
1622929798.9060574-CDS-H-paniculata_contig26630:2476..25841622929798.9060574-CDS-H-paniculata_contig26630:2476..2584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26630 2477..2584 -
1691481015.8219786-CDS-H-paniculata_contig26630:2476..25841691481015.8219786-CDS-H-paniculata_contig26630:2476..2584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26630 2477..2584 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929798.9226289-UTR-H-paniculata_contig26630:2584..25871622929798.9226289-UTR-H-paniculata_contig26630:2584..2587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26630 2585..2587 -
1691481015.8316176-UTR-H-paniculata_contig26630:2584..25871691481015.8316176-UTR-H-paniculata_contig26630:2584..2587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26630 2585..2587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26630.7276.1

>prot_H-paniculata_contig26630.7276.1 ID=prot_H-paniculata_contig26630.7276.1|Name=mRNA_H-paniculata_contig26630.7276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
MLRAERARHERELERERSAAEARIDGLKLRLLQTAQQALGKSQARDQAEA
WGRSKLPTNAHLPSSTPRPITTTITGNKNNNNYNVTRQQNSGVNVGGGGN
GGSGGGDRGSEAAERSEKVKVLELRAAMANERRAAAAKDLEISENMRRRL
EEEVLDLRAKLSKPSTPSQLKHMELSRKV
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mRNA from alignment at H-paniculata_contig26630:301..2587-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26630.7276.1 ID=mRNA_H-paniculata_contig26630.7276.1|Name=mRNA_H-paniculata_contig26630.7276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2287bp|location=Sequence derived from alignment at H-paniculata_contig26630:301..2587- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAATGTTGAGGGCGGAGCGGGCGCGGCATGAGCGGGAGCTAGAGAGGGA
GAGGTCGGCGGCGGAGGCGAGGATTGACGGACTCAAGCTGAGGCTTCTGC
AGACGGCTCAGGTATATGAATGGTTCGTTTTGTGTGGTGGGTTTGGCGCT
CTATGTGGATAAGAGGGGTTGTGTGTGTTGGGTGTGGGTTGTATGTGGGT
TGGGTGTGCGTGGGCGTCCAAGAGCGTGGGTAGGCTGGGTGGTGATGTAG
CGTGGTGTAGTGTGGTGTGGTGCTTGCGGTGAAACGGTGTGTAGTATATG
GTTGATGAAATCGGGTGCTTGGTTTGTTTTAATTTCGATAGTGTCTTGTG
GGCGTAAAAGCAATCGAATTTTCTTTCAGGCAGTCCAGTCTGATTACTGT
ATTAATAGTAGCCCACTAACTCCAATGAACTTTTATTGCTATTGGAAAAA
GAAGTCAAGCTTCAATCGATCCATCCAAGGCGAAAATAAGGAAACGAATA
CCTTCCCCCCCAAAAAAGACAAACAAAAAAATAAACAAAAACAGACCTAT
TGTAAAAGAATTTTTTTGGCACGAAAAAGCTCAACCTTCCTAACGATCGC
ACCAATCAGGGGCCGCCATATATAATGAAAGCTATATATATCTATATATC
TATATATATAGCTTTCAACATTACACACAAGAACGAACCATAGCGTCCCT
AGGTCGCGTGCTAGAGTCTAAGAAAAGCACCCAACCACCGCTATCCCTCG
TGCTCTTTTCCAATACCCACCCCCCACACACCCTGGTGGTGCTGGCCAAG
CAGGCCCTTGGGAAATCGCAAGCACGGGATCAAGCGGAAGCCTGGGGCAG
GTCCAAGCTCCCCACCAATGCACACCTACCCTCCTCGACCCCCCGACCCA
TCACCACCACCATCACTGGCAACAAAAATAATAACAACTACAACGTCACC
CGTCAACAAAATTCTGGAGTCAATGTTGGTGGTGGTGGTAATGGTGGCAG
CGGCGGCGGTGACCGCGGGTCAGAGGCGGCAGAGCGAAGCGAAAAGGTGA
AGGTGTTGGAGCTGCGAGCGGCGATGGCGAACGAGAGGCGTGCTGCGGCT
GCCAAGGATCTAGAGATATCAGAGGTGTGTGTACGTGTGTGTGAAATGTA
TTGTAGTGTGCATGCCGTGGTCGTTAAGGGTAATTTATAGGTTGATTTTA
TTTTGGAGGCATTGCGTTATCTTATCTTATGTTATGTACGAGTATATGTT
ATTGATGCAAAGCTCTACATATGAAGGATTTGCGTGCTGGGTGTTGCATT
ACGTGTTGCGTGTTGCGTCACGTGCAGCAGGACTTGGGTGCTTTGCATCC
ATCGCTTAAGCTGAGCTCAAGTGAGCTGAGATGAGAAGCAAGGGTAGCGA
CGCAAAGTCTGCCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTTGTC
TTGGCCGAGGAAAAAAATAGAATACTACCATGGTTGTGCGTTCCCAGCAT
ATTGCGTGTGATGAAACGCGTTGCGACTGACACGTATCTTGCGCTGGTTG
GCTTTTTTTTTTTTTTTTTTACCAGATAAAAATCTCCGCAAGACCACAAA
AAAAAAGAAAAAAGGTTACCATCTTGTTTTAAAAGATACCCTAATAGTAG
CGAGCGTATGGCAAGCGGTACGTGATCGAACTATAATAGTCAATCAGCTT
GTCAGACAAGAGTTTGTGGCAAACTATAATAATAATAAGAATAATAATAA
TAAAATAAAAACATAAAAACATAAAAGAAAGTAGGATCAGTCCTCACTCA
CTCTAGTTTTCACTAACGAGTATATACCCCCACGCTCTGATGTAGTTTGA
CCTGCATCACCATTTTATTAAGAGTAAGCTCTGCATGAGTACACCCCCCG
TCATTCAATAGACTAATGTAACGTTTTTGCTCATTGAGTGCAGTTGTTCA
CGACTGCACTTATAAGTCAACTACGTAACAATAACACGAGTACGATAAAA
TCAATCCCCACCCTCCTCAACAACAACCACGTTTGGCAACGAAGGGAAGA
ACGATTGATCATCGGAAATCGCTCTGATAGAAACACAGTTCCCTCCTGCC
GAGGACACGTGGTCAAAGATCTTACAGACTGCGGCATGCTAAACATGAGT
GCCCCCCCCCCCCCTCCCTGCCGTCCCTCCAGAACATGCGACGGCGGCTG
GAAGAAGAGGTGCTGGACCTTCGTGCGAAGCTGAGCAAACCTTCCACCCC
GTCCCAGTTGAAGCATATGGAGTTGTCTCGTAAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig26630:301..2587-

>mRNA_H-paniculata_contig26630.7276.1 ID=mRNA_H-paniculata_contig26630.7276.1|Name=mRNA_H-paniculata_contig26630.7276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig26630:301..2587- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGAGGGCGGAGCGGGCGCGGCATGAGCGGGAGCTAGAGAGGGAGAG
GTCGGCGGCGGAGGCGAGGATTGACGGACTCAAGCTGAGGCTTCTGCAGA
CGGCTCAGATGTTGAGGGCGGAGCGGGCGCGGCATGAGCGGGAGCTAGAG
AGGGAGAGGTCGGCGGCGGAGGCGAGGATTGACGGACTCAAGCTGAGGCT
TCTGCAGACGGCTCAGCAGGCCCTTGGGAAATCGCAAGCACGGGATCAAG
CGGAAGCCTGGGGCAGGTCCAAGCTCCCCACCAATGCACACCTACCCTCC
TCGACCCCCCGACCCATCACCACCACCATCACTGGCAACAAAAATAATAA
CAACTACAACGTCACCCGTCAACAAAATTCTGGAGTCAATGTTGGTGGTG
GTGGTAATGGTGGCAGCGGCGGCGGTGACCGCGGGTCAGAGGCGGCAGAG
CGAAGCGAAAAGGTGAAGGTGTTGGAGCTGCGAGCGGCGATGGCGAACGA
GAGGCGTGCTGCGGCTGCCAAGGATCTAGAGATATCAGAGCAGGCCCTTG
GGAAATCGCAAGCACGGGATCAAGCGGAAGCCTGGGGCAGGTCCAAGCTC
CCCACCAATGCACACCTACCCTCCTCGACCCCCCGACCCATCACCACCAC
CATCACTGGCAACAAAAATAATAACAACTACAACGTCACCCGTCAACAAA
ATTCTGGAGTCAATGTTGGTGGTGGTGGTAATGGTGGCAGCGGCGGCGGT
GACCGCGGGTCAGAGGCGGCAGAGCGAAGCGAAAAGGTGAAGGTGTTGGA
GCTGCGAGCGGCGATGGCGAACGAGAGGCGTGCTGCGGCTGCCAAGGATC
TAGAGATATCAGAGAACATGCGACGGCGGCTGGAAGAAGAGGTGCTGGAC
CTTCGTGCGAAGCTGAGCAAACCTTCCACCCCGTCCCAGTTGAAGCATAT
GGAGTTGTCTCGTAAGGTAAACATGCGACGGCGGCTGGAAGAAGAGGTGC
TGGACCTTCGTGCGAAGCTGAGCAAACCTTCCACCCCGTCCCAGTTGAAG
CATATGGAGTTGTCTCGTAAGGTA
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