mRNA_H-paniculata_contig26621.7274.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26621.7274.1
Unique NamemRNA_H-paniculata_contig26621.7274.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig26621.7274.1 vs. uniprot
Match: L8H3I6_ACACA (Xpo1 domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H3I6_ACACA)

HSP 1 Score: 68.6 bits (166), Expect = 2.320e-11
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    4 YLAASHASLPRWVYTKLGKALIDVGKTSWPNEDPNFISDLQQMASNHSTRVAGLELLTLTCEEFVRPDSPLPNLRKKELRACLVWAMPNV 273
            +L A +++LP +V TKL K  + VGK  +P+  P F + L  +A ++STRV GL ++T+ C+EF          R+KEL+      MP +
Sbjct:   96 FLRAHYSALPGFVGTKLAKVAVAVGKADYPHHFPEFFAYLLALARDNSTRVLGLSMITIACDEFADTRGQTSATRRKELKQLFQQQMPVI 185
[Close]
BLAST of mRNA_H-paniculata_contig26621.7274.1 vs. uniprot
Match: A0A8C6CB25_MONMO (Xpo1 domain-containing protein n=1 Tax=Monodon monoceros TaxID=40151 RepID=A0A8C6CB25_MONMO)

HSP 1 Score: 58.9 bits (141), Expect = 5.040e-8
Identity = 31/97 (31.96%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:    7 LAASHASLPRWVYTKLGKALIDVGKTSWPNEDPNFISDLQQMASNHSTRVAGLELLTLTCEEFVRPDSPLPNLRKKELRACLVWAMPNVLHVLAEVI 297
            L A H +LP +++ KL K ++D+G+  WP    +F +++ Q+  +  T   GL +L  T E+   P   L   RK+ELR  L+  +  VL +L  ++
Sbjct:   95 LLAHHKTLPYFIWNKLCKVIVDIGRQDWPMFYHDFFTNILQLIQSLVTTPLGLIILKTTSEDLACPAEDLRVARKEELRKLLLDQVQTVLGLLTGIL 191
[Close]
BLAST of mRNA_H-paniculata_contig26621.7274.1 vs. uniprot
Match: A0A8B8WII7_BALMU (LOW QUALITY PROTEIN: exportin-6-like n=1 Tax=Balaenoptera musculus TaxID=9771 RepID=A0A8B8WII7_BALMU)

HSP 1 Score: 57.0 bits (136), Expect = 2.670e-7
Identity = 31/97 (31.96%), Postives = 51/97 (52.58%), Query Frame = 1 
Query:    7 LAASHASLPRWVYTKLGKALIDVGKTSWPNEDPNFISDLQQMASNHSTRVAGLELLTLTCEEFVRPDSPLPNLRKKELRACLVWAMPNVLHVLAEVI 297
            L A   +LP +++ KL K ++D+G+  WP    +F ++  Q+  +  T   GL +L  T EE   P   L   RK+ELR  L+  +  VL +L  ++
Sbjct:   95 LLAHRKTLPYFIWNKLCKVIVDIGRQDWPMFYHDFFTNTLQLIQSPVTTPLGLIMLKTTSEELACPGEDLSVARKEELRKLLLDQVQTVLGLLTGIL 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26621.7274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
L8H3I6_ACACA2.320e-1136.67Xpo1 domain-containing protein n=1 Tax=Acanthamoeb... [more]
A0A8C6CB25_MONMO5.040e-831.96Xpo1 domain-containing protein n=1 Tax=Monodon mon... [more]
A0A8B8WII7_BALMU2.670e-731.96LOW QUALITY PROTEIN: exportin-6-like n=1 Tax=Balae... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26621contigH-paniculata_contig26621:2180..3233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score74.3
Seed ortholog evalue3.5e-11
Seed eggNOG ortholog45351.EDO42656
Preferred nameXPO6
KEGG koko:K15001
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007610,GO:0007611,GO:0007613,GO:0007614,GO:0007626,GO:0007628,GO:0007629,GO:0008104,GO:0008150,GO:0008344,GO:0008565,GO:0015031,GO:0015833,GO:0016020,GO:0016319,GO:0030534,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048036,GO:0048513,GO:0048731,GO:0048856,GO:0050877,GO:0050890,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060322,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0090659
EggNOG free text desc.Exportin 6
EggNOG OGs39RM0@33154,3BDGE@33208,COG5101@1,KOG2020@2759
COG Functional cat.UY
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00199,ko01000
Exons2
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929798.6855922-CDS-H-paniculata_contig26621:2179..23391622929798.6855922-CDS-H-paniculata_contig26621:2179..2339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26621 2180..2339 -
1691481015.7128987-CDS-H-paniculata_contig26621:2179..23391691481015.7128987-CDS-H-paniculata_contig26621:2179..2339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26621 2180..2339 -
1622929798.704733-CDS-H-paniculata_contig26621:3096..32331622929798.704733-CDS-H-paniculata_contig26621:3096..3233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26621 3097..3233 -
1691481015.7244408-CDS-H-paniculata_contig26621:3096..32331691481015.7244408-CDS-H-paniculata_contig26621:3096..3233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26621 3097..3233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26621.7274.1prot_H-paniculata_contig26621.7274.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26621 2180..3233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26621.7274.1

>prot_H-paniculata_contig26621.7274.1 ID=prot_H-paniculata_contig26621.7274.1|Name=mRNA_H-paniculata_contig26621.7274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
QYLAASHASLPRWVYTKLGKALIDVGKTSWPNEDPNFISDLQQMASNHST
RVAGLELLTLTCEEFVRPDSPLPNLRKKELRACLVWAMPNVLHVLAEVI
back to top

mRNA from alignment at H-paniculata_contig26621:2180..3233-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26621.7274.1 ID=mRNA_H-paniculata_contig26621.7274.1|Name=mRNA_H-paniculata_contig26621.7274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1054bp|location=Sequence derived from alignment at H-paniculata_contig26621:2180..3233- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTACCTCGCTGCCTCGCATGCTTCACTGCCTCGATGGGTGTATACGAA
GCTTGGGAAGGCATTGATAGACGTGGGAAAGACGTCGTGGCCGAATGAGG
ACCCAAATTTCATTTCGGATTTGCAACAAATGGCGAGGTGAAATGGAAAT
ACGAAGATACTGAGATGTGTGTAAGCTACCCTCTCTCTCTCTCTCTCTCT
CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCATGTTTG
TCTGTGTTTGTCGGTGTGTGTCTTTCTGCCTGTCTGTGTCTGTCTGCCTT
TCTCTCCCTCTCCCCCCCCCCCTCTGCCTCTTTGCCTCTCTCTGTCTCGG
TCTCTGCTTTTCTCTTTTTCTCTTCCACTGTGCTCTGCAGCTAACGGTGG
TCTATATTAGGTTGTGTGTGCACGTAAGATTTGGGGTGTTTGACGCACAA
CATGAAGATTGCAAGCGTAGACGTTTTTGGGTGCGCGCAACTAGTTAATT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAATATTGAGC
GCCTCCTCCGCAGGCAGGAAAATATTGAGGTAATTCCAACACGACACGGA
CACATGATAGGGTCCAAGTTGAACCGATCAAAAGGTTGGCGTACTTGACA
AGTAGGAAATACAGATGGTAAATGACAGTATGTGCCCCCCCCCAATACGT
AAGGTCGAAATGTAGGTCAAGTCACTAGAACAATAGTAAAATTATTATTC
AAGCGTGCGTCCGACTTGTATCGTCATCATCACGTATTCTCAACATTCCG
ACTCCATGCCTACAATGTTCCATCCATCCATCCATCCATCCATCTATCCA
TATATACGTCTATATGATCGTATTATCTCTTGTCTCTTGGCCAGCAACCA
CTCTACGCGAGTGGCAGGGCTTGAGCTGCTCACGTTGACGTGCGAGGAGT
TTGTGAGGCCTGACTCCCCCCTGCCGAACTTGCGAAAGAAGGAGCTTAGA
GCTTGCCTCGTATGGGCGATGCCGAACGTGCTGCATGTGCTCGCAGAGGT
AATA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig26621:2180..3233-

>mRNA_H-paniculata_contig26621.7274.1 ID=mRNA_H-paniculata_contig26621.7274.1|Name=mRNA_H-paniculata_contig26621.7274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig26621:2180..3233- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTACCTCGCTGCCTCGCATGCTTCACTGCCTCGATGGGTGTATACGAA
GCTTGGGAAGGCATTGATAGACGTGGGAAAGACGTCGTGGCCGAATGAGG
ACCCAAATTTCATTTCGGATTTGCAACAAATGGCGAGCAGTACCTCGCTG
CCTCGCATGCTTCACTGCCTCGATGGGTGTATACGAAGCTTGGGAAGGCA
TTGATAGACGTGGGAAAGACGTCGTGGCCGAATGAGGACCCAAATTTCAT
TTCGGATTTGCAACAAATGGCGAGCAACCACTCTACGCGAGTGGCAGGGC
TTGAGCTGCTCACGTTGACGTGCGAGGAGTTTGTGAGGCCTGACTCCCCC
CTGCCGAACTTGCGAAAGAAGGAGCTTAGAGCTTGCCTCGTATGGGCGAT
GCCGAACGTGCTGCATGTGCTCGCAGAGGTAATACAACCACTCTACGCGA
GTGGCAGGGCTTGAGCTGCTCACGTTGACGTGCGAGGAGTTTGTGAGGCC
TGACTCCCCCCTGCCGAACTTGCGAAAGAAGGAGCTTAGAGCTTGCCTCG
TATGGGCGATGCCGAACGTGCTGCATGTGCTCGCAGAGGTAATA
back to top