mRNA_H-paniculata_contig26615.7272.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26615.7272.1
Unique NamemRNA_H-paniculata_contig26615.7272.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26615.7272.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 9.250e-8
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   13 EETVKEELSDFLRIENCSL-DRVPLRHTLFFWKAHAGHFSYMARVARVVLGAPASAAVIERDFSIAGRM 216
            E+T + EL++   ++  SL   +     L +WK  A  +  +ARVARVV GAPASAAV+ERDFS AGRM
Sbjct:  580 EQTARAELTNLRAVQGGSLAPGLSCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRM 648
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BLAST of mRNA_H-paniculata_contig26615.7272.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.360e-5
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:   13 EETVKEELSDFLRIENCSLDR-VPLRHTLFFWKAHAGHFSYMARVARVVLGAPASAAVIERDFSIAGRM 216
            E+T + EL+    ++  SL   +     L +WK  A  +  +ARVARVV+GA ASAAV+E DFS AGRM
Sbjct:  353 EQTARAELTKLRAVQGGSLAAGLRCEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRM 421
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BLAST of mRNA_H-paniculata_contig26615.7272.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 47.4 bits (111), Expect = 4.680e-5
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:  124 FSYMARVARVVLGAPASAAVIERDFSIAGRM 216
            +  +ARVARVV GAPASAAV+ERDFS AGRM
Sbjct:    6 YPLLARVARVVFGAPASAAVLERDFSNAGRM 36
[Close]
BLAST of mRNA_H-paniculata_contig26615.7272.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 47.4 bits (111), Expect = 6.490e-5
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:   52 IENCSLDRVPLRHTLFFWKAHAGHFSYMARVARVVLGAPASAAVIERDFSIAGRM 216
            ++  ++D +     L +WK     +  +AR ARVV GAPASAAV+E DF  AGR+
Sbjct:   24 LQKRTIDELSCDSVLKWWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRI 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26615.7272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JZ82_9PHAE9.250e-849.28Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE1.360e-546.38Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE4.680e-577.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE6.490e-543.64Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26615contigH-paniculata_contig26615:212..427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929798.5221553-CDS-H-paniculata_contig26615:211..4271622929798.5221553-CDS-H-paniculata_contig26615:211..427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26615 212..427 -
1691481015.6391757-CDS-H-paniculata_contig26615:211..4271691481015.6391757-CDS-H-paniculata_contig26615:211..427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26615 212..427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26615.7272.1prot_H-paniculata_contig26615.7272.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26615 212..427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26615.7272.1

>prot_H-paniculata_contig26615.7272.1 ID=prot_H-paniculata_contig26615.7272.1|Name=mRNA_H-paniculata_contig26615.7272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
AKTDEETVKEELSDFLRIENCSLDRVPLRHTLFFWKAHAGHFSYMARVAR
VVLGAPASAAVIERDFSIAGRM
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mRNA from alignment at H-paniculata_contig26615:212..427-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26615.7272.1 ID=mRNA_H-paniculata_contig26615.7272.1|Name=mRNA_H-paniculata_contig26615.7272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig26615:212..427- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAAAACAGACGAGGAAACCGTAAAGGAGGAACTGTCGGACTTCCTGCG
GATCGAAAACTGCAGTTTGGATCGTGTGCCACTCCGTCACACGCTGTTCT
TTTGGAAAGCGCACGCTGGTCACTTCTCCTACATGGCACGAGTGGCGCGT
GTGGTGCTGGGGGCTCCGGCTTCGGCGGCTGTAATTGAACGGGATTTCAG
CATTGCCGGCCGCATG
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Coding sequence (CDS) from alignment at H-paniculata_contig26615:212..427-

>mRNA_H-paniculata_contig26615.7272.1 ID=mRNA_H-paniculata_contig26615.7272.1|Name=mRNA_H-paniculata_contig26615.7272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig26615:212..427- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAAAACAGACGAGGAAACCGTAAAGGAGGAACTGTCGGACTTCCTGCG
GATCGAAAACTGCAGTTTGGATCGTGTGCCACTCCGTCACACGCTGTTCT
TTTGGAAAGCGCACGCTGGTCACTTCTCCTACATGGCACGAGTGGCGCGT
GTGGTGCTGGGGGCTCCGGCTTCGGCGGCTGTAATTGAACGGGATTTCAG
CATTGCCGGCCGCATGGCGAAAACAGACGAGGAAACCGTAAAGGAGGAAC
TGTCGGACTTCCTGCGGATCGAAAACTGCAGTTTGGATCGTGTGCCACTC
CGTCACACGCTGTTCTTTTGGAAAGCGCACGCTGGTCACTTCTCCTACAT
GGCACGAGTGGCGCGTGTGGTGCTGGGGGCTCCGGCTTCGGCGGCTGTAA
TTGAACGGGATTTCAGCATTGCCGGCCGCATG
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