prot_H-paniculata_contig26615.7272.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig26615.7272.1
Unique Nameprot_H-paniculata_contig26615.7272.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length72
Homology
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BLAST of mRNA_H-paniculata_contig26615.7272.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 9.250e-8
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 0 
Query:    5 EETVKEELSDFLRIENCSL-DRVPLRHTLFFWKAHAGHFSYMARVARVVLGAPASAAVIERDFSIAGRM 72
            E+T + EL++   ++  SL   +     L +WK  A  +  +ARVARVV GAPASAAV+ERDFS AGRM
Sbjct:  580 EQTARAELTNLRAVQGGSLAPGLSCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRM 648
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BLAST of mRNA_H-paniculata_contig26615.7272.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.360e-5
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 0 
Query:    5 EETVKEELSDFLRIENCSLDR-VPLRHTLFFWKAHAGHFSYMARVARVVLGAPASAAVIERDFSIAGRM 72
            E+T + EL+    ++  SL   +     L +WK  A  +  +ARVARVV+GA ASAAV+E DFS AGRM
Sbjct:  353 EQTARAELTKLRAVQGGSLAAGLRCEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRM 421
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BLAST of mRNA_H-paniculata_contig26615.7272.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 47.4 bits (111), Expect = 4.680e-5
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0 
Query:   42 FSYMARVARVVLGAPASAAVIERDFSIAGRM 72
            +  +ARVARVV GAPASAAV+ERDFS AGRM
Sbjct:    6 YPLLARVARVVFGAPASAAVLERDFSNAGRM 36
[Close]
BLAST of mRNA_H-paniculata_contig26615.7272.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 47.4 bits (111), Expect = 6.490e-5
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 0 
Query:   18 IENCSLDRVPLRHTLFFWKAHAGHFSYMARVARVVLGAPASAAVIERDFSIAGRM 72
            ++  ++D +     L +WK     +  +AR ARVV GAPASAAV+E DF  AGR+
Sbjct:   24 LQKRTIDELSCDSVLKWWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRI 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26615.7272.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JZ82_9PHAE9.250e-849.28Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE1.360e-546.38Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE4.680e-577.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE6.490e-543.64Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 32..72
e-value: 1.6E-5
score: 24.6
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 32..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26615contigH-paniculata_contig26615:212..427 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26615.7272.1mRNA_H-paniculata_contig26615.7272.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig26615 212..427 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig26615.7272.1 ID=prot_H-paniculata_contig26615.7272.1|Name=mRNA_H-paniculata_contig26615.7272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
AKTDEETVKEELSDFLRIENCSLDRVPLRHTLFFWKAHAGHFSYMARVAR
VVLGAPASAAVIERDFSIAGRM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf