mRNA_H-paniculata_contig26578.7258.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26578.7258.1
Unique NamemRNA_H-paniculata_contig26578.7258.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26578.7258.1 vs. uniprot
Match: D7FXV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV0_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.260e-24
Identity = 66/138 (47.83%), Postives = 83/138 (60.14%), Query Frame = 1 
Query:    1 RRVLSKVFEAGMTTMELKMGKVVGSHTGAGVVCGHPERVGRLARSPGVTASTATAGSAAVSCLEFDSMGALLAVGGADNVSVYDFDEYLPQVSRVRPAAAGEACAHLQPTHCIYTRQFVSCVRWNPANENQLAVSFLH 414
            R+ LS V  +G+ T  L+MG V  S TG+GVV GHP   G   R  G            VSC+EFDS+G  LAVGG +NV+VYDFD YLP+  +V+        A+LQPT  I T++ VSCVRWNPAN +Q  V+  H
Sbjct:  297 RQALSTVLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAG-----------GVSCMEFDSVGWQLAVGG-ENVTVYDFDRYLPENQQVKRTLESGVRAYLQPTDGIQTKRTVSCVRWNPANGDQGQVTASH 422
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BLAST of mRNA_H-paniculata_contig26578.7258.1 vs. uniprot
Match: A0A6H5JZC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC0_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.460e-11
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    1 RRVLSKVFEAGMTTMELKMGKVVGSHTGAGVVCGHPERVGRLARSPGVTASTATAGSAAVSCLEFDSMGALLAVGGADNVSVYDFDEYLPQ 273
            R+ LS V  +G+ T  L+MG V  S TG+GVV GHP   G   R  G            VSC+EFDS+G  LAVGG +NV+VYDFD YLP+
Sbjct:  129 RQALSTVLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAG-----------GVSCMEFDSVGWQLAVGG-ENVTVYDFDRYLPE 207
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BLAST of mRNA_H-paniculata_contig26578.7258.1 vs. uniprot
Match: A0A7C9AIK8_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AIK8_OPUST)

HSP 1 Score: 52.8 bits (125), Expect = 6.480e-5
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:  178 VSCLEFDSMGALLA-VGGADNVSVYDFDEYLPQVSRVRPAAAGEACAHLQ--PTHCIYTRQFVSCVRWNPANENQLAVSFLHYDEIRVFDLELILPNAEAVPVLTLVP 492
            VS LEFD+ G  LA V  A  + V+DF+    Q + + P    +   HL   PTH    RQ +  VRWNPAN++++A + L   EI +FD+  +  ++E V VL   P
Sbjct:   14 VSALEFDTQGIYLASVTKAGCLMVHDFESLYCQSNVISPWLKEDETKHLLHIPTH----RQ-LDAVRWNPANQDEVACTSLKSSEIYIFDVAYV--SSEPVEVLRKRP 114
[Close]
BLAST of mRNA_H-paniculata_contig26578.7258.1 vs. uniprot
Match: A0A7C9AGZ0_OPUST (Uncharacterized protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AGZ0_OPUST)

HSP 1 Score: 52.8 bits (125), Expect = 8.790e-5
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:  178 VSCLEFDSMGALLA-VGGADNVSVYDFDEYLPQVSRVRPAAAGEACAHLQ--PTHCIYTRQFVSCVRWNPANENQLAVSFLHYDEIRVFDLELILPNAEAVPVLTLVP 492
            VS LEFD+ G  LA V  A  + V+DF+    Q + + P    +   HL   PTH    RQ +  VRWNPAN++++A + L   EI +FD+  +  ++E V VL   P
Sbjct:   91 VSALEFDTQGIYLASVTKAGCLMVHDFESLYCQSNVISPWLKEDETKHLLHIPTH----RQ-LDAVRWNPANQDEVACTSLKSSEIYIFDVAYV--SSEPVEVLRKRP 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26578.7258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FXV0_ECTSI2.260e-2447.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZC0_9PHAE1.460e-1149.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7C9AIK8_OPUST6.480e-537.96Uncharacterized protein (Fragment) n=1 Tax=Opuntia... [more]
A0A7C9AGZ0_OPUST8.790e-537.96Uncharacterized protein n=1 Tax=Opuntia streptacan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26578contigH-paniculata_contig26578:250..2665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue2.3e-09
Seed eggNOG ortholog164328.Phyra94595
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD40 repeats
EggNOG OGs28M25@1,2QTIU@2759,3QA8B@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size606
Cds size606
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26578.7258.1prot_H-paniculata_contig26578.7258.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26578 250..2665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.0732195-CDS-H-paniculata_contig26578:249..4621622929797.0732195-CDS-H-paniculata_contig26578:249..462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26578 250..462 -
1691481014.9494562-CDS-H-paniculata_contig26578:249..4621691481014.9494562-CDS-H-paniculata_contig26578:249..462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26578 250..462 -
1622929797.086532-CDS-H-paniculata_contig26578:1122..12421622929797.086532-CDS-H-paniculata_contig26578:1122..1242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26578 1123..1242 -
1691481014.9594297-CDS-H-paniculata_contig26578:1122..12421691481014.9594297-CDS-H-paniculata_contig26578:1122..1242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26578 1123..1242 -
1622929797.0988784-CDS-H-paniculata_contig26578:2392..26651622929797.0988784-CDS-H-paniculata_contig26578:2392..2665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26578 2393..2665 -
1691481014.969598-CDS-H-paniculata_contig26578:2392..26651691481014.969598-CDS-H-paniculata_contig26578:2392..2665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26578 2393..2665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26578.7258.1

>prot_H-paniculata_contig26578.7258.1 ID=prot_H-paniculata_contig26578.7258.1|Name=mRNA_H-paniculata_contig26578.7258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
RRVLSKVFEAGMTTMELKMGKVVGSHTGAGVVCGHPERVGRLARSPGVTA
STATAGSAAVSCLEFDSMGALLAVGGADNVSVYDFDEYLPQVSRVRPAAA
GEACAHLQPTHCIYTRQFVSCVRWNPANENQLAVSFLHYDEIRVFDLELI
LPNAEAVPVLTLVPDGVRGRHGSNGGGAFRERSRSVGAFASGRRNAGNAV
S*
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mRNA from alignment at H-paniculata_contig26578:250..2665-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26578.7258.1 ID=mRNA_H-paniculata_contig26578.7258.1|Name=mRNA_H-paniculata_contig26578.7258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2416bp|location=Sequence derived from alignment at H-paniculata_contig26578:250..2665- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACGCGTCCTGTCTAAGGTTTTCGAGGCGGGGATGACCACGATGGAGCT
CAAGATGGGGAAGGTGGTGGGGTCGCATACGGGCGCTGGCGTTGTGTGCG
GGCATCCTGAGAGGGTGGGCAGGCTCGCGCGGAGTCCCGGCGTGACTGCG
AGCACCGCGACTGCTGGCTCGGCGGCCGTATCGTGTCTGGAGTTCGATTC
GATGGGAGCGCTGCTGGCTGTGGGAGGCGCGGACAACGTTTCCGTGTATG
ACTTCGACGAGTATTTACCTCAGGTTCTGTACTCTAAAGTTCCCGATCAT
GGGGACTGTACTCTAAAACCTGTATGATAACGTCTGACTGTTCCAATTCT
TCGTTGCCTCTGGCAACATACATGATACATGTGATAAAAGACATGAAAGA
ATTGCAGAAGGCGGGCAGATGGTCTCTTGATCTCGACCTGCAAGGTTGCC
AAAGTTAGGCCGACACCATACGCAGGAAAATGCACAGTGACGCTCGCTTG
TTCCCAGCAGAAGTTCTACACACAACTTGCACTGTCCGCTGGGTGTTCGG
CGATAAATGTGCTGTGCTGTTGTGATTTTTTGTGTGGCATGCGAAACAAT
TATTTATCATCGACGAAATGGGATGCACTGTCTGTTGCTGTATGAGTGGA
TCGTTCATAAGCTACAGGAGGACAATGGGTGCCCACGATCCTCGTCGCAT
CCTGTCATATGGGTTCGTGGGTGCGGTGCTGGTTGCTCTCGTGAGTCTGA
ATATTTGGTATGTTCTGAGTCGTACTGGTACCTGGTAACAGGGCAAAAAA
CACGATCGGGAACAAAATGTAACGGTGAAACGAGGAGAGCGGACAGCACC
CTAAAACTAGTATGTTTAGTGCATGGGTGCTCGTTCCGTGATTGGAGAAG
AATTTTTAACGTCCGCTTCACAAGGAAAAATGAACACTCATCGCGCTTCT
CTTTAGGCACGGGCGACAGGCATGTACAGAGAGTACTTCGCACCCTTGCC
GCATTTTTTATTAACACTACAGCTAGAGAACAGTGCTGTAACGTGATTTT
CCTATGCTGGAAATTTAGAACCAGACGCGATTCCACAAGCTTGACCCGTC
GGTGTGTTTTTTTTTTCGGTTTGTTCTAACTGCGGTACAGGTGCACGGTC
GAGATGTCGAGCGGTTGCGGAACGAGGTGGTATCGGTAGAACTAGACCAA
ACACATTAGTGCCGTTGTGTGGGATTTCTGACGCGTTCGCGTTCCGTTGC
ATTTATTTTTGCGGTTTCAAGCCTACCATCTGTTTGGTTTCTCTCGTGAT
TTTTTTTTTTCATGTCTGCTGAAGTCTGTCCGTGCCTTGTGATTGGTGCA
TTCCTCGTGTTCTGCACGGTAATGTTGGCATCACTACTCTTCGTTATCCT
TGTGTTTTCCAAAAATATGGCAGGTCAGCCGTGTCCGGCCGGCTGCTGCG
GGAGAGGCCTGCGCGCACCTTCAGCCTACTCACTGCATCTACACCAGGCA
ATTTGTTTCATGCGTGCGGTGGAACCCGGCCAATGAGAACCAGGTATGAC
CATCGTGAAAGCCCCTAGAATGAAAAGACGTCTTAAGTTACCCGAAAATA
TTCACGTTTAATGAGGTCTTTTGTGTTTGTGTGTGTGTTGAGCCAAGACA
TAAATGTCATAGCCTTGAGGCGTGTCCCTTTTGGTTTAAAAGCTACGCAT
GGCCGCGAAGAACACATGATACTCTCGGAGCACCTGTAAACGCGTTACAT
GAAGGGTAGCATTCGACCTACAGCACAGCAGTAACAGAACTGCAGTACCG
ACAGAAACTCACCAGTCGTGCTGTAAGCAACTAGTAATCTACGAATAACA
CGAGTCTTTCAGCATTAGTGCCGACGAAAACATTCAAATACGTGTACCCC
CGTTAATACCCTCTCCACCCCTCAGCTATTCTGCTGTAGATCTGGTGATA
ATATGGTTATGATTGTAGGCTAAACCATCTCAAACATCACCCCTACCATT
GCCCTCACTTCCAAAACGTTTTGAGCCACATTTGACAAATTAGGAAAGAC
CAATTGGCCACCAGGAATCGCTCTGATAAGAACAAAACCCCGTCCTCCCG
AGGACGCTTGGTCAACGGTCTAACGACTACGGCATGGAAAAAATGAGTAC
GCCCTCCCCCCCCCCCACCCTCAATCCCACGTACTTGCCCAATAATACAC
CAGCTGGCCGTCAGCTTTTTGCACTACGACGAGATACGCGTGTTCGACCT
CGAGCTCATCCTGCCAAACGCAGAGGCGGTACCGGTGCTCACTTTAGTCC
CCGACGGGGTACGCGGTCGACACGGCAGTAACGGCGGCGGGGCGTTCAGA
GAAAGGAGCCGTAGCGTGGGTGCATTTGCCTCCGGCCGCCGTAACGCAGG
TAATGCCGTTTCTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig26578:250..2665-

>mRNA_H-paniculata_contig26578.7258.1 ID=mRNA_H-paniculata_contig26578.7258.1|Name=mRNA_H-paniculata_contig26578.7258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig26578:250..2665- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACGCGTCCTGTCTAAGGTTTTCGAGGCGGGGATGACCACGATGGAGCT
CAAGATGGGGAAGGTGGTGGGGTCGCATACGGGCGCTGGCGTTGTGTGCG
GGCATCCTGAGAGGGTGGGCAGGCTCGCGCGGAGTCCCGGCGTGACTGCG
AGCACCGCGACTGCTGGCTCGGCGGCCGTATCGTGTCTGGAGTTCGATTC
GATGGGAGCGCTGCTGGCTGTGGGAGGCGCGGACAACGTTTCCGTGTATG
ACTTCGACGAGTATTTACCTCAGAGACGCGTCCTGTCTAAGGTTTTCGAG
GCGGGGATGACCACGATGGAGCTCAAGATGGGGAAGGTGGTGGGGTCGCA
TACGGGCGCTGGCGTTGTGTGCGGGCATCCTGAGAGGGTGGGCAGGCTCG
CGCGGAGTCCCGGCGTGACTGCGAGCACCGCGACTGCTGGCTCGGCGGCC
GTATCGTGTCTGGAGTTCGATTCGATGGGAGCGCTGCTGGCTGTGGGAGG
CGCGGACAACGTTTCCGTGTATGACTTCGACGAGTATTTACCTCAGGTCA
GCCGTGTCCGGCCGGCTGCTGCGGGAGAGGCCTGCGCGCACCTTCAGCCT
ACTCACTGCATCTACACCAGGCAATTTGTTTCATGCGTGCGGTGGAACCC
GGCCAATGAGAACCAGGTCAGCCGTGTCCGGCCGGCTGCTGCGGGAGAGG
CCTGCGCGCACCTTCAGCCTACTCACTGCATCTACACCAGGCAATTTGTT
TCATGCGTGCGGTGGAACCCGGCCAATGAGAACCAGCTGGCCGTCAGCTT
TTTGCACTACGACGAGATACGCGTGTTCGACCTCGAGCTCATCCTGCCAA
ACGCAGAGGCGGTACCGGTGCTCACTTTAGTCCCCGACGGGGTACGCGGT
CGACACGGCAGTAACGGCGGCGGGGCGTTCAGAGAAAGGAGCCGTAGCGT
GGGTGCATTTGCCTCCGGCCGCCGTAACGCAGGTAATGCCGTTTCTTGAC
TGGCCGTCAGCTTTTTGCACTACGACGAGATACGCGTGTTCGACCTCGAG
CTCATCCTGCCAAACGCAGAGGCGGTACCGGTGCTCACTTTAGTCCCCGA
CGGGGTACGCGGTCGACACGGCAGTAACGGCGGCGGGGCGTTCAGAGAAA
GGAGCCGTAGCGTGGGTGCATTTGCCTCCGGCCGCCGTAACGCAGGTAAT
GCCGTTTCTTGA
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