prot_H-paniculata_contig26578.7258.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig26578.7258.1
Unique Nameprot_H-paniculata_contig26578.7258.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length202
Homology
BLAST of mRNA_H-paniculata_contig26578.7258.1 vs. uniprot
Match: D7FXV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV0_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.260e-24
Identity = 66/138 (47.83%), Postives = 83/138 (60.14%), Query Frame = 0
Query:    1 RRVLSKVFEAGMTTMELKMGKVVGSHTGAGVVCGHPERVGRLARSPGVTASTATAGSAAVSCLEFDSMGALLAVGGADNVSVYDFDEYLPQVSRVRPAAAGEACAHLQPTHCIYTRQFVSCVRWNPANENQLAVSFLH 138
            R+ LS V  +G+ T  L+MG V  S TG+GVV GHP   G   R  G            VSC+EFDS+G  LAVGG +NV+VYDFD YLP+  +V+        A+LQPT  I T++ VSCVRWNPAN +Q  V+  H
Sbjct:  297 RQALSTVLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAG-----------GVSCMEFDSVGWQLAVGG-ENVTVYDFDRYLPENQQVKRTLESGVRAYLQPTDGIQTKRTVSCVRWNPANGDQGQVTASH 422          
BLAST of mRNA_H-paniculata_contig26578.7258.1 vs. uniprot
Match: A0A6H5JZC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC0_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.460e-11
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 0
Query:    1 RRVLSKVFEAGMTTMELKMGKVVGSHTGAGVVCGHPERVGRLARSPGVTASTATAGSAAVSCLEFDSMGALLAVGGADNVSVYDFDEYLPQ 91
            R+ LS V  +G+ T  L+MG V  S TG+GVV GHP   G   R  G            VSC+EFDS+G  LAVGG +NV+VYDFD YLP+
Sbjct:  129 RQALSTVLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAG-----------GVSCMEFDSVGWQLAVGG-ENVTVYDFDRYLPE 207          
BLAST of mRNA_H-paniculata_contig26578.7258.1 vs. uniprot
Match: A0A7C9AIK8_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AIK8_OPUST)

HSP 1 Score: 52.8 bits (125), Expect = 6.480e-5
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0
Query:   60 VSCLEFDSMGALLA-VGGADNVSVYDFDEYLPQVSRVRPAAAGEACAHLQ--PTHCIYTRQFVSCVRWNPANENQLAVSFLHYDEIRVFDLELILPNAEAVPVLTLVP 164
            VS LEFD+ G  LA V  A  + V+DF+    Q + + P    +   HL   PTH    RQ +  VRWNPAN++++A + L   EI +FD+  +  ++E V VL   P
Sbjct:   14 VSALEFDTQGIYLASVTKAGCLMVHDFESLYCQSNVISPWLKEDETKHLLHIPTH----RQ-LDAVRWNPANQDEVACTSLKSSEIYIFDVAYV--SSEPVEVLRKRP 114          
BLAST of mRNA_H-paniculata_contig26578.7258.1 vs. uniprot
Match: A0A7C9AGZ0_OPUST (Uncharacterized protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AGZ0_OPUST)

HSP 1 Score: 52.8 bits (125), Expect = 8.790e-5
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 0
Query:   60 VSCLEFDSMGALLA-VGGADNVSVYDFDEYLPQVSRVRPAAAGEACAHLQ--PTHCIYTRQFVSCVRWNPANENQLAVSFLHYDEIRVFDLELILPNAEAVPVLTLVP 164
            VS LEFD+ G  LA V  A  + V+DF+    Q + + P    +   HL   PTH    RQ +  VRWNPAN++++A + L   EI +FD+  +  ++E V VL   P
Sbjct:   91 VSALEFDTQGIYLASVTKAGCLMVHDFESLYCQSNVISPWLKEDETKHLLHIPTH----RQ-LDAVRWNPANQDEVACTSLKSSEIYIFDVAYV--SSEPVEVLRKRP 191          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26578.7258.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FXV0_ECTSI2.260e-2447.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZC0_9PHAE1.460e-1149.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7C9AIK8_OPUST6.480e-537.96Uncharacterized protein (Fragment) n=1 Tax=Opuntia... [more]
A0A7C9AGZ0_OPUST8.790e-537.96Uncharacterized protein n=1 Tax=Opuntia streptacan... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 106..146
e-value: 17.0
score: 9.2
coord: 46..84
e-value: 0.5
score: 18.9
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 36..150
e-value: 3.3E-6
score: 28.3
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 57..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26578contigH-paniculata_contig26578:250..2665 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26578.7258.1mRNA_H-paniculata_contig26578.7258.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig26578 250..2665 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig26578.7258.1 ID=prot_H-paniculata_contig26578.7258.1|Name=mRNA_H-paniculata_contig26578.7258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
RRVLSKVFEAGMTTMELKMGKVVGSHTGAGVVCGHPERVGRLARSPGVTA
STATAGSAAVSCLEFDSMGALLAVGGADNVSVYDFDEYLPQVSRVRPAAA
GEACAHLQPTHCIYTRQFVSCVRWNPANENQLAVSFLHYDEIRVFDLELI
LPNAEAVPVLTLVPDGVRGRHGSNGGGAFRERSRSVGAFASGRRNAGNAV
S*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf