mRNA_H-paniculata_contig26570.7256.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26570.7256.1
Unique NamemRNA_H-paniculata_contig26570.7256.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26570.7256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26570contigH-paniculata_contig26570:2844..3435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size258
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.9046388-CDS-H-paniculata_contig26570:2843..30441622929796.9046388-CDS-H-paniculata_contig26570:2843..3044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26570 2844..3044 +
1691481014.897236-CDS-H-paniculata_contig26570:2843..30441691481014.897236-CDS-H-paniculata_contig26570:2843..3044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26570 2844..3044 +
1622929796.9328883-CDS-H-paniculata_contig26570:3378..34351622929796.9328883-CDS-H-paniculata_contig26570:3378..3435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26570 3379..3435 +
1691481014.905099-CDS-H-paniculata_contig26570:3378..34351691481014.905099-CDS-H-paniculata_contig26570:3378..3435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26570 3379..3435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26570.7256.1prot_H-paniculata_contig26570.7256.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26570 2844..3435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26570.7256.1

>prot_H-paniculata_contig26570.7256.1 ID=prot_H-paniculata_contig26570.7256.1|Name=mRNA_H-paniculata_contig26570.7256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MVAADVERQCATLKAQRQAEINDGLNTYELNEEEKHEAQDIAVHKINETV
TLSFGYTLASSGSSEEDVVPSLHSKEGELYSPNERD
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mRNA from alignment at H-paniculata_contig26570:2844..3435+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26570.7256.1 ID=mRNA_H-paniculata_contig26570.7256.1|Name=mRNA_H-paniculata_contig26570.7256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=592bp|location=Sequence derived from alignment at H-paniculata_contig26570:2844..3435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGCAGCAGACGTAGAAAGGCAATGCGCCACTTTAAAGGCTCAGAG
ACAGGCAGAGATCAACGATGGTTTGAACACTTACGAGCTTAATGAAGAAG
AAAAACACGAGGCCCAAGACATAGCAGTACACAAAATCAACGAGACCGTC
ACCCTGAGCTTTGGCTACACCCTCGCCTCTAGCGGGTCATCAGAAGAGGA
CGTAAGCAGGCGCTCAATACTATCTTTTGTCTAGGTTTCAGATCCACAGT
AGAACAAGCAATTAGCAAGGGTTATGTGCCCTTATCGTAAGTAGTGGAGA
TGTATGTTGGACTTACTTACGAAAGGGCGGGATTTTGGCAGAGCGACACC
CTACCCTTAATCGTTTCATATGCTGGCTGTATTATTGCTGCGTCTGTGCC
TCATGTTTATGAACATCAATGCTGATCCTCTGCTGAGCGTTTTACAGGTG
ACTGAGTAAAATGTTTGTCATGGCTGCTTCTCACAATGTTGTCCGCACGA
ACCTACCGTCTTTGATATGGCTTTACTTACAACAGGTCGTTCCTTCTCTG
CATTCCAAGGAAGGCGAATTGTACAGTCCCAATGAACGCGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig26570:2844..3435+

>mRNA_H-paniculata_contig26570.7256.1 ID=mRNA_H-paniculata_contig26570.7256.1|Name=mRNA_H-paniculata_contig26570.7256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig26570:2844..3435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGCAGCAGACGTAGAAAGGCAATGCGCCACTTTAAAGGCTCAGAG
ACAGGCAGAGATCAACGATGGTTTGAACACTTACGAGCTTAATGAAGAAG
AAAAACACGAGGCCCAAGACATAGCAGTACACAAAATCAACGAGACCGTC
ACCCTGAGCTTTGGCTACACCCTCGCCTCTAGCGGGTCATCAGAAGAGGA
CATGGTGGCAGCAGACGTAGAAAGGCAATGCGCCACTTTAAAGGCTCAGA
GACAGGCAGAGATCAACGATGGTTTGAACACTTACGAGCTTAATGAAGAA
GAAAAACACGAGGCCCAAGACATAGCAGTACACAAAATCAACGAGACCGT
CACCCTGAGCTTTGGCTACACCCTCGCCTCTAGCGGGTCATCAGAAGAGG
ACGTCGTTCCTTCTCTGCATTCCAAGGAAGGCGAATTGTACAGTCCCAAT
GAACGCGATGTCGTTCCTTCTCTGCATTCCAAGGAAGGCGAATTGTACAG
TCCCAATGAACGCGAT
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