mRNA_H-paniculata_contig26540.7249.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26540.7249.1
Unique NamemRNA_H-paniculata_contig26540.7249.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26540.7249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26540contigH-paniculata_contig26540:127..1773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1648
Cds size1623
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.080598-UTR-H-paniculata_contig26540:126..1501622929796.080598-UTR-H-paniculata_contig26540:126..150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26540 127..150 +
1691481014.5403836-UTR-H-paniculata_contig26540:126..1501691481014.5403836-UTR-H-paniculata_contig26540:126..150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26540 127..150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.0928016-CDS-H-paniculata_contig26540:150..17731622929796.0928016-CDS-H-paniculata_contig26540:150..1773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26540 151..1773 +
1691481014.5506873-CDS-H-paniculata_contig26540:150..17731691481014.5506873-CDS-H-paniculata_contig26540:150..1773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26540 151..1773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26540.7249.1prot_H-paniculata_contig26540.7249.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26540 151..1773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26540.7249.1

>prot_H-paniculata_contig26540.7249.1 ID=prot_H-paniculata_contig26540.7249.1|Name=mRNA_H-paniculata_contig26540.7249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=541bp
MSKTLRPPPLSSLHVANGPHWTQSNLDGRHCTKLRQPAAYVPASEFATSI
GLSPKWPQRAARPVYSERRRSKRCTEVVVQALDESKHNHCQASTPKNPRP
RLDRLNERGKETLASAIAALQKVWRSPVMLQLRARRTVVRIDDTLTYLDH
IFDWQRRKEYCSNKLQQIAHAQHREHPCLNGSSKLNYMLRVDTDKGAGIR
RNFSLEASRRGKMRLAEESEERSMGLSGSKVLQLASAKPMCTTEVGRAWP
ARKADLVGGIAKASATSTYIEKAKTEKEVSSVSSKKEETRISETLVRPVD
NIIVSAVHAANVKQDVQASVVVGEMLKEEAKMGEALVTATAIEARREVVR
HMVADYRRVRHATKKLQTAWSRYRKAISVTKNIKAAAEAKAAEVAATAAS
VAEEIQLSSEVKAAEQVKTIQMPMSKKKQAWKARREARVKRGPSAREELR
VDVNKVKAGDVKAGTDNILESAIAVDISGTLEASEAAGDAKQKQKVQMPQ
EPKAAAGGIDSKQQASVAGTEPLIHPLTEEAAEVFCKKQKE
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mRNA from alignment at H-paniculata_contig26540:127..1773+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26540.7249.1 ID=mRNA_H-paniculata_contig26540.7249.1|Name=mRNA_H-paniculata_contig26540.7249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1647bp|location=Sequence derived from alignment at H-paniculata_contig26540:127..1773+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCATCAGCCATCAATCCACCATGTCCAAGACCCTACGACCGCCGCC
CCTCTCCAGCCTACACGTAGCGAACGGACCGCACTGGACACAATCCAACT
TAGATGGTCGTCACTGCACTAAGCTACGACAGCCCGCTGCCTACGTGCCT
GCTTCCGAGTTCGCAACAAGCATTGGTCTATCGCCCAAGTGGCCACAGCG
AGCGGCTCGCCCGGTCTACAGCGAGCGACGACGTAGCAAACGGTGTACTG
AGGTCGTGGTACAAGCCTTAGATGAGTCCAAGCATAACCATTGCCAAGCT
AGCACTCCAAAGAATCCACGACCGCGGTTGGACAGGCTCAATGAGAGAGG
TAAGGAGACATTAGCTTCCGCTATCGCAGCACTCCAGAAGGTTTGGCGGT
CGCCCGTAATGCTTCAACTCCGAGCCCGACGCACGGTGGTGAGGATCGAC
GACACCCTCACGTATCTGGACCACATATTCGATTGGCAACGACGCAAGGA
ATATTGTAGCAACAAGCTTCAGCAGATCGCTCATGCTCAGCACCGGGAAC
ATCCCTGCCTCAACGGATCATCTAAGCTCAACTACATGCTACGAGTAGAT
ACCGATAAAGGCGCCGGCATCCGACGGAATTTCTCTCTTGAAGCCAGCCG
GAGAGGCAAGATGCGACTGGCGGAAGAGTCCGAGGAGAGGAGCATGGGTT
TGAGCGGATCTAAGGTGCTTCAGCTGGCGAGCGCGAAGCCCATGTGTACG
ACCGAGGTGGGTCGGGCGTGGCCCGCACGCAAAGCAGACCTGGTAGGAGG
GATAGCAAAGGCATCCGCCACGAGTACATATATCGAAAAAGCCAAGACTG
AAAAGGAGGTGTCCAGCGTAAGCTCAAAGAAAGAGGAGACAAGGATCAGC
GAAACACTAGTGAGGCCCGTAGACAATATAATCGTAAGCGCAGTTCATGC
AGCGAACGTAAAACAGGACGTCCAGGCTTCTGTAGTGGTTGGGGAAATGT
TGAAAGAGGAAGCCAAGATGGGTGAAGCACTAGTGACTGCCACGGCGATA
GAAGCTAGACGGGAGGTCGTCCGCCACATGGTGGCTGACTACCGCCGAGT
CAGGCACGCGACGAAGAAACTCCAAACGGCATGGTCGCGCTACCGAAAGG
CGATCTCGGTGACCAAGAATATCAAGGCTGCGGCGGAGGCCAAAGCGGCC
GAAGTAGCGGCGACTGCTGCGTCGGTGGCAGAGGAGATCCAGCTTTCCTC
GGAGGTTAAAGCTGCGGAACAAGTCAAGACTATCCAGATGCCAATGTCCA
AGAAAAAGCAAGCGTGGAAGGCCAGGCGAGAGGCAAGAGTCAAAAGAGGA
CCCAGCGCTAGAGAGGAACTCCGAGTAGACGTGAATAAAGTGAAGGCGGG
CGATGTAAAAGCGGGAACAGACAATATTCTAGAAAGTGCTATAGCAGTTG
ATATCTCCGGAACTCTCGAAGCATCGGAGGCCGCAGGTGATGCGAAGCAG
AAGCAGAAGGTCCAGATGCCGCAAGAGCCGAAGGCGGCAGCGGGGGGTAT
AGATTCGAAACAACAAGCCAGTGTAGCTGGGACGGAACCATTGATACATC
CGCTCACAGAGGAGGCCGCGGAGGTTTTCTGTAAGAAGCAGAAGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig26540:127..1773+

>mRNA_H-paniculata_contig26540.7249.1 ID=mRNA_H-paniculata_contig26540.7249.1|Name=mRNA_H-paniculata_contig26540.7249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3246bp|location=Sequence derived from alignment at H-paniculata_contig26540:127..1773+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCAAGACCCTACGACCGCCGCCCCTCTCCAGCCTACACGTAGCGAA
CGGACCGCACTGGACACAATCCAACTTAGATGGTCGTCACTGCACTAAGC
TACGACAGCCCGCTGCCTACGTGCCTGCTTCCGAGTTCGCAACAAGCATT
GGTCTATCGCCCAAGTGGCCACAGCGAGCGGCTCGCCCGGTCTACAGCGA
GCGACGACGTAGCAAACGGTGTACTGAGGTCGTGGTACAAGCCTTAGATG
AGTCCAAGCATAACCATTGCCAAGCTAGCACTCCAAAGAATCCACGACCG
CGGTTGGACAGGCTCAATGAGAGAGGTAAGGAGACATTAGCTTCCGCTAT
CGCAGCACTCCAGAAGGTTTGGCGGTCGCCCGTAATGCTTCAACTCCGAG
CCCGACGCACGGTGGTGAGGATCGACGACACCCTCACGTATCTGGACCAC
ATATTCGATTGGCAACGACGCAAGGAATATTGTAGCAACAAGCTTCAGCA
GATCGCTCATGCTCAGCACCGGGAACATCCCTGCCTCAACGGATCATCTA
AGCTCAACTACATGCTACGAGTAGATACCGATAAAGGCGCCGGCATCCGA
CGGAATTTCTCTCTTGAAGCCAGCCGGAGAGGCAAGATGCGACTGGCGGA
AGAGTCCGAGGAGAGGAGCATGGGTTTGAGCGGATCTAAGGTGCTTCAGC
TGGCGAGCGCGAAGCCCATGTGTACGACCGAGGTGGGTCGGGCGTGGCCC
GCACGCAAAGCAGACCTGGTAGGAGGGATAGCAAAGGCATCCGCCACGAG
TACATATATCGAAAAAGCCAAGACTGAAAAGGAGGTGTCCAGCGTAAGCT
CAAAGAAAGAGGAGACAAGGATCAGCGAAACACTAGTGAGGCCCGTAGAC
AATATAATCGTAAGCGCAGTTCATGCAGCGAACGTAAAACAGGACGTCCA
GGCTTCTGTAGTGGTTGGGGAAATGTTGAAAGAGGAAGCCAAGATGGGTG
AAGCACTAGTGACTGCCACGGCGATAGAAGCTAGACGGGAGGTCGTCCGC
CACATGGTGGCTGACTACCGCCGAGTCAGGCACGCGACGAAGAAACTCCA
AACGGCATGGTCGCGCTACCGAAAGGCGATCTCGGTGACCAAGAATATCA
AGGCTGCGGCGGAGGCCAAAGCGGCCGAAGTAGCGGCGACTGCTGCGTCG
GTGGCAGAGGAGATCCAGCTTTCCTCGGAGGTTAAAGCTGCGGAACAAGT
CAAGACTATCCAGATGCCAATGTCCAAGAAAAAGCAAGCGTGGAAGGCCA
GGCGAGAGGCAAGAGTCAAAAGAGGACCCAGCGCTAGAGAGGAACTCCGA
GTAGACGTGAATAAAGTGAAGGCGGGCGATGTAAAAGCGGGAACAGACAA
TATTCTAGAAAGTGCTATAGCAGTTGATATCTCCGGAACTCTCGAAGCAT
CGGAGGCCGCAGGTGATGCGAAGCAGAAGCAGAAGGTCCAGATGCCGCAA
GAGCCGAAGGCGGCAGCGGGGGGTATAGATTCGAAACAACAAGCCAGTGT
AGCTGGGACGGAACCATTGATACATCCGCTCACAGAGGAGGCCGCGGAGG
TTTTCTGTAAGAAGCAGAAGGAGATGTCCAAGACCCTACGACCGCCGCCC
CTCTCCAGCCTACACGTAGCGAACGGACCGCACTGGACACAATCCAACTT
AGATGGTCGTCACTGCACTAAGCTACGACAGCCCGCTGCCTACGTGCCTG
CTTCCGAGTTCGCAACAAGCATTGGTCTATCGCCCAAGTGGCCACAGCGA
GCGGCTCGCCCGGTCTACAGCGAGCGACGACGTAGCAAACGGTGTACTGA
GGTCGTGGTACAAGCCTTAGATGAGTCCAAGCATAACCATTGCCAAGCTA
GCACTCCAAAGAATCCACGACCGCGGTTGGACAGGCTCAATGAGAGAGGT
AAGGAGACATTAGCTTCCGCTATCGCAGCACTCCAGAAGGTTTGGCGGTC
GCCCGTAATGCTTCAACTCCGAGCCCGACGCACGGTGGTGAGGATCGACG
ACACCCTCACGTATCTGGACCACATATTCGATTGGCAACGACGCAAGGAA
TATTGTAGCAACAAGCTTCAGCAGATCGCTCATGCTCAGCACCGGGAACA
TCCCTGCCTCAACGGATCATCTAAGCTCAACTACATGCTACGAGTAGATA
CCGATAAAGGCGCCGGCATCCGACGGAATTTCTCTCTTGAAGCCAGCCGG
AGAGGCAAGATGCGACTGGCGGAAGAGTCCGAGGAGAGGAGCATGGGTTT
GAGCGGATCTAAGGTGCTTCAGCTGGCGAGCGCGAAGCCCATGTGTACGA
CCGAGGTGGGTCGGGCGTGGCCCGCACGCAAAGCAGACCTGGTAGGAGGG
ATAGCAAAGGCATCCGCCACGAGTACATATATCGAAAAAGCCAAGACTGA
AAAGGAGGTGTCCAGCGTAAGCTCAAAGAAAGAGGAGACAAGGATCAGCG
AAACACTAGTGAGGCCCGTAGACAATATAATCGTAAGCGCAGTTCATGCA
GCGAACGTAAAACAGGACGTCCAGGCTTCTGTAGTGGTTGGGGAAATGTT
GAAAGAGGAAGCCAAGATGGGTGAAGCACTAGTGACTGCCACGGCGATAG
AAGCTAGACGGGAGGTCGTCCGCCACATGGTGGCTGACTACCGCCGAGTC
AGGCACGCGACGAAGAAACTCCAAACGGCATGGTCGCGCTACCGAAAGGC
GATCTCGGTGACCAAGAATATCAAGGCTGCGGCGGAGGCCAAAGCGGCCG
AAGTAGCGGCGACTGCTGCGTCGGTGGCAGAGGAGATCCAGCTTTCCTCG
GAGGTTAAAGCTGCGGAACAAGTCAAGACTATCCAGATGCCAATGTCCAA
GAAAAAGCAAGCGTGGAAGGCCAGGCGAGAGGCAAGAGTCAAAAGAGGAC
CCAGCGCTAGAGAGGAACTCCGAGTAGACGTGAATAAAGTGAAGGCGGGC
GATGTAAAAGCGGGAACAGACAATATTCTAGAAAGTGCTATAGCAGTTGA
TATCTCCGGAACTCTCGAAGCATCGGAGGCCGCAGGTGATGCGAAGCAGA
AGCAGAAGGTCCAGATGCCGCAAGAGCCGAAGGCGGCAGCGGGGGGTATA
GATTCGAAACAACAAGCCAGTGTAGCTGGGACGGAACCATTGATACATCC
GCTCACAGAGGAGGCCGCGGAGGTTTTCTGTAAGAAGCAGAAGGAG
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