mRNA_H-paniculata_contig26530.7244.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26530.7244.1
Unique NamemRNA_H-paniculata_contig26530.7244.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: H3G557_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G557_PHYRM)

HSP 1 Score: 105 bits (262), Expect = 5.500e-26
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
            D +WA D++ R+STT YVF LNG AISW S++Q     SSTEAE +A     +EAV+LR LL  +G  C G+TT+F++N+  I L+K    H RTKHI + +H LRE
Sbjct:  105 DANWAGDLDSRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLRE 211          
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY)

HSP 1 Score: 104 bits (259), Expect = 2.780e-25
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
            D D+A DV+ RKSTT YVF +  GAI+WCSR+QQ  + S+TEAE VAA E  KEA++LR+LL  I      +  L+ +N+SAI L K    H RTKHI V +H ++E
Sbjct:  106 DSDYASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKE 212          
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 105 bits (263), Expect = 5.560e-25
Identity = 57/107 (53.27%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
            D D+A DV+DRKST+ YVF L GGA+SW S+KQ   T S+TEAE VAA     +A++LRN+LG IG      TTLF +N S I LSK    H R+KHI V ++ LR+
Sbjct:  225 DSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRD 331          
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM)

HSP 1 Score: 104 bits (259), Expect = 8.400e-25
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
            D +WA D++ R+STT YVF LNG AISW S++Q     SSTEAE +A     +EAV+LR LL  +G  C G+TT F++N+  I L+K    H RTKHI + +H LRE
Sbjct:  164 DANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLRE 270          
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT)

HSP 1 Score: 105 bits (262), Expect = 2.570e-24
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
            D +WA DV+ R+ST+ YVFK+    +SWCS+KQ   T S+TEAE VA  +  +EA+++R LL  IG      TT++E+N+ AI +SK +  H RTKHI V +H +RE
Sbjct:  386 DANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVRE 492          
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: A0A7D9DPP1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DPP1_PARCT)

HSP 1 Score: 105 bits (262), Expect = 3.390e-24
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
            D +WA DV+ R+ST+ YVFK+    +SWCS+KQ   T S+TEAE VA  +  +EA+++R LL  IG      TT++E+N+ AI +SK +  H RTKHI V +H +RE
Sbjct: 1131 DANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRGLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVRE 1237          
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: H3H7T3_PHYRM (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7T3_PHYRM)

HSP 1 Score: 105 bits (261), Expect = 3.950e-24
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
            D +WA D++ R+STT YVF LNG AISW S++Q     SSTEAE +A     +EAV+LR LL  +G  C G+TT+F++N+  I L+K    H RTKHI + +H LRE
Sbjct:  428 DANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLRE 534          
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 102 bits (254), Expect = 4.250e-24
Identity = 51/107 (47.66%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
            D DWA D++ R+ST+ YVF++NG  +SWCS++Q   T S+TEAE VA     +E V+LR LL  IG      + + E+N+ AI LSK    H RTKHI V +H +RE
Sbjct:  157 DADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVRE 263          
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: A0A2P4XPH2_9STRA (RxLR effector candidate protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPH2_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.630e-24
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
            D +WA D++ R+STT YVF LNG AISW S++Q     SSTEAE +A     +EAV+LR LL  +G   +G+TT++++N+  I L+K    H RTKHI + +H LRE
Sbjct:   92 DANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNAIQEAVWLRQLLKDLGYENKGATTIYQDNQGCIALAKNPAYHTRTKHIDIKFHFLRE 198          
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: A0A816R0P7_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816R0P7_9BILA)

HSP 1 Score: 100 bits (250), Expect = 5.350e-24
Identity = 53/107 (49.53%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
            D DW    EDRKSTT Y+F LNG  ISW S+KQQ    SSTEAE +A     KEA++LR LL  +G    G TT++E+N+S I ++  +  H RTKHI V +H +R+
Sbjct:   97 DADWGG-AEDRKSTTGYLFLLNGSPISWTSKKQQTVALSSTEAEYIALAHATKEAIWLRKLLKDLGQEQIGPTTIYEDNQSTIAIANNTINHQRTKHIDVQFHFIRD 202          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3G557_PHYRM5.500e-2650.47Uncharacterized protein n=3 Tax=Phytophthora ramor... [more]
A0A1Y1N3K4_PHOPY2.780e-2551.40Uncharacterized protein n=2 Tax=Photinus pyralis T... [more]
A0A6D2JBX5_9BRAS5.560e-2553.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GB69_PHYRM8.400e-2550.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9JFU5_PARCT2.570e-2447.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9DPP1_PARCT3.390e-2447.66Retrovirus-related Pol poly from transposon TNT 1-... [more]
H3H7T3_PHYRM3.950e-2450.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9D5L2_PARCT4.250e-2447.66Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A2P4XPH2_9STRA4.630e-2448.60RxLR effector candidate protein (Fragment) n=1 Tax... [more]
A0A816R0P7_9BILA5.350e-2449.53Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26530contigH-paniculata_contig26530:3018..3338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score60.8
Seed ortholog evalue1.8e-07
Seed eggNOG ortholog7070.TC001425-PA
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size321
Cds size135
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.6298914-UTR-H-paniculata_contig26530:3017..32031622929795.6298914-UTR-H-paniculata_contig26530:3017..3203Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26530 3018..3203 -
1691481014.329037-UTR-H-paniculata_contig26530:3017..32031691481014.329037-UTR-H-paniculata_contig26530:3017..3203Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26530 3018..3203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.646474-CDS-H-paniculata_contig26530:3203..33381622929795.646474-CDS-H-paniculata_contig26530:3203..3338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26530 3204..3338 -
1691481014.3453386-CDS-H-paniculata_contig26530:3203..33381691481014.3453386-CDS-H-paniculata_contig26530:3203..3338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26530 3204..3338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26530.7244.1prot_H-paniculata_contig26530.7244.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26530 3204..3338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26530.7244.1

>prot_H-paniculata_contig26530.7244.1 ID=prot_H-paniculata_contig26530.7244.1|Name=mRNA_H-paniculata_contig26530.7244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*
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mRNA from alignment at H-paniculata_contig26530:3018..3338-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26530.7244.1 ID=mRNA_H-paniculata_contig26530.7244.1|Name=mRNA_H-paniculata_contig26530.7244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig26530:3018..3338- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGTCGATTGGGCGGAAGATGTCGAGGACCGAAAATCCACAACAACATA CGTATTCAAACTAAACGGTGGTGCGATAAGTTGGTGCTCTAGGAAGCAAC AGTTTGCCACGTGGTCCAGTACAGAGGCAGAGTAGGTTGCTGCAGGAGAA CCGGGGAAGGAGGCGGTATATCTTAGGAATTTACTAGGATCAATAGGTTC CGGATGCAGGGGGAGCACGACATTGTTTGAGAACAATAAATCAGCTATTA ATCTCAGTAAGGGATCTGACGCACACTGCAGGACAAAGCACATCGGAGTG TGCTGGCACGGACTTCGAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig26530:3018..3338-

>mRNA_H-paniculata_contig26530.7244.1 ID=mRNA_H-paniculata_contig26530.7244.1|Name=mRNA_H-paniculata_contig26530.7244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig26530:3018..3338- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGTCGATTGGGCGGAAGATGTCGAGGACCGAAAATCCACAACAACATA
CGTATTCAAACTAAACGGTGGTGCGATAAGTTGGTGCTCTAGGAAGCAAC
AGTTTGCCACGTGGTCCAGTACAGAGGCAGAGTAGGACGTCGATTGGGCG
GAAGATGTCGAGGACCGAAAATCCACAACAACATACGTATTCAAACTAAA
CGGTGGTGCGATAAGTTGGTGCTCTAGGAAGCAACAGTTTGCCACGTGGT
CCAGTACAGAGGCAGAGTAG
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