mRNA_H-paniculata_contig26530.7244.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: H3G557_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G557_PHYRM) HSP 1 Score: 105 bits (262), Expect = 5.500e-26 Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
D +WA D++ R+STT YVF LNG AISW S++Q SSTEAE +A +EAV+LR LL +G C G+TT+F++N+ I L+K H RTKHI + +H LRE
Sbjct: 105 DANWAGDLDSRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLRE 211
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY) HSP 1 Score: 104 bits (259), Expect = 2.780e-25 Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
D D+A DV+ RKSTT YVF + GAI+WCSR+QQ + S+TEAE VAA E KEA++LR+LL I + L+ +N+SAI L K H RTKHI V +H ++E
Sbjct: 106 DSDYASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKE 212
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS) HSP 1 Score: 105 bits (263), Expect = 5.560e-25 Identity = 57/107 (53.27%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
D D+A DV+DRKST+ YVF L GGA+SW S+KQ T S+TEAE VAA +A++LRN+LG IG TTLF +N S I LSK H R+KHI V ++ LR+
Sbjct: 225 DSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRD 331
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM) HSP 1 Score: 104 bits (259), Expect = 8.400e-25 Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 1
Query: 1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
D +WA D++ R+STT YVF LNG AISW S++Q SSTEAE +A +EAV+LR LL +G C G+TT F++N+ I L+K H RTKHI + +H LRE
Sbjct: 164 DANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLRE 270
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT) HSP 1 Score: 105 bits (262), Expect = 2.570e-24 Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
D +WA DV+ R+ST+ YVFK+ +SWCS+KQ T S+TEAE VA + +EA+++R LL IG TT++E+N+ AI +SK + H RTKHI V +H +RE
Sbjct: 386 DANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVRE 492
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: A0A7D9DPP1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DPP1_PARCT) HSP 1 Score: 105 bits (262), Expect = 3.390e-24 Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
D +WA DV+ R+ST+ YVFK+ +SWCS+KQ T S+TEAE VA + +EA+++R LL IG TT++E+N+ AI +SK + H RTKHI V +H +RE
Sbjct: 1131 DANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRGLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVRE 1237
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: H3H7T3_PHYRM (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7T3_PHYRM) HSP 1 Score: 105 bits (261), Expect = 3.950e-24 Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
D +WA D++ R+STT YVF LNG AISW S++Q SSTEAE +A +EAV+LR LL +G C G+TT+F++N+ I L+K H RTKHI + +H LRE
Sbjct: 428 DANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLRE 534
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT) HSP 1 Score: 102 bits (254), Expect = 4.250e-24 Identity = 51/107 (47.66%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
D DWA D++ R+ST+ YVF++NG +SWCS++Q T S+TEAE VA +E V+LR LL IG + + E+N+ AI LSK H RTKHI V +H +RE
Sbjct: 157 DADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVRE 263
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: A0A2P4XPH2_9STRA (RxLR effector candidate protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPH2_9STRA) HSP 1 Score: 100 bits (250), Expect = 4.630e-24 Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
D +WA D++ R+STT YVF LNG AISW S++Q SSTEAE +A +EAV+LR LL +G +G+TT++++N+ I L+K H RTKHI + +H LRE
Sbjct: 92 DANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNAIQEAVWLRQLLKDLGYENKGATTIYQDNQGCIALAKNPAYHTRTKHIDIKFHFLRE 198
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Match: A0A816R0P7_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816R0P7_9BILA) HSP 1 Score: 100 bits (250), Expect = 5.350e-24 Identity = 53/107 (49.53%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 1 DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*VAAGEPGKEAVYLRNLLGSIGSGCRGSTTLFENNKSAINLSKGSDAHCRTKHIGVCWHGLRE 321
D DW EDRKSTT Y+F LNG ISW S+KQQ SSTEAE +A KEA++LR LL +G G TT++E+N+S I ++ + H RTKHI V +H +R+
Sbjct: 97 DADWGG-AEDRKSTTGYLFLLNGSPISWTSKKQQTVALSSTEAEYIALAHATKEAIWLRKLLKDLGQEQIGPTTIYEDNQSTIAIANNTINHQRTKHIDVQFHFIRD 202 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26530.7244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26530.7244.1 >prot_H-paniculata_contig26530.7244.1 ID=prot_H-paniculata_contig26530.7244.1|Name=mRNA_H-paniculata_contig26530.7244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp DVDWAEDVEDRKSTTTYVFKLNGGAISWCSRKQQFATWSSTEAE*back to top mRNA from alignment at H-paniculata_contig26530:3018..3338- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26530.7244.1 ID=mRNA_H-paniculata_contig26530.7244.1|Name=mRNA_H-paniculata_contig26530.7244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig26530:3018..3338- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26530:3018..3338- >mRNA_H-paniculata_contig26530.7244.1 ID=mRNA_H-paniculata_contig26530.7244.1|Name=mRNA_H-paniculata_contig26530.7244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig26530:3018..3338- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |