mRNA_H-paniculata_contig26481.7228.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26481.7228.1
Unique NamemRNA_H-paniculata_contig26481.7228.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26481.7228.1 vs. uniprot
Match: A0A6H5L2C7_9PHAE (Bms1-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2C7_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.710e-36
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:    1 SFGFEMETFEFLTILQVHGFPKVMGVLTYLDKFDDVKALRVTKKKLKPRFWTEVYSGAKVFGMGGDINGKYHKTEV 228
            SFGFEMETFEFL ILQVHGFPKVM VLT+LD+FD+VKALR TKKKLK RFWTEVY+GAKVFGMGG+INGKY KTEV
Sbjct:  154 SFGFEMETFEFLNILQVHGFPKVMCVLTHLDRFDNVKALRATKKKLKTRFWTEVYNGAKVFGMGGEINGKYPKTEV 229
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BLAST of mRNA_H-paniculata_contig26481.7228.1 vs. uniprot
Match: A0A392NWD7_9FABA (Ribosome biogenesis protein BMS1 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NWD7_9FABA)

HSP 1 Score: 117 bits (294), Expect = 4.010e-32
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:    1 SFGFEMETFEFLTILQVHGFPKVMGVLTYLDKFDDVKALRVTKKKLKPRFWTEVYSGAKVFGMGGDINGKYHKTEV 228
            S+GFEMETFEFL ILQVHGFPKVMGVLT+LD F DVK LR TK++LK RFWTE+Y GAK+F + G I+GKY K EV
Sbjct:   18 SYGFEMETFEFLNILQVHGFPKVMGVLTHLDHFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREV 93
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BLAST of mRNA_H-paniculata_contig26481.7228.1 vs. uniprot
Match: UPI0000452A59 (hypothetical protein n=1 Tax=Cryptosporidium hominis (strain TU502) TaxID=353151 RepID=UPI0000452A59)

HSP 1 Score: 116 bits (290), Expect = 9.710e-32
Identity = 54/76 (71.05%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:    1 SFGFEMETFEFLTILQVHGFPKVMGVLTYLDKFDDVKALRVTKKKLKPRFWTEVYSGAKVFGMGGDINGKYHKTEV 228
            SF FEMETFEFL ILQVHGFP+V+GVLT+LDK +D K LR TKKKLK RFWTE+Y+GAK+F + G  NG Y+KTE+
Sbjct:   21 SFSFEMETFEFLNILQVHGFPRVLGVLTHLDKIEDNKTLRKTKKKLKNRFWTEIYNGAKLFYLSGIHNGFYNKTEI 96
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BLAST of mRNA_H-paniculata_contig26481.7228.1 vs. uniprot
Match: D8QXE0_SELML (Bms1-type G domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QXE0_SELML)

HSP 1 Score: 123 bits (308), Expect = 5.850e-31
Identity = 57/76 (75.00%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 SFGFEMETFEFLTILQVHGFPKVMGVLTYLDKFDDVKALRVTKKKLKPRFWTEVYSGAKVFGMGGDINGKYHKTEV 228
            S+GFEMETFEFL +LQVHGFPKVMGVLT+LDKF DVKALR TKK+LK RFWTE+Y GAK+F + G I+GKY K E+
Sbjct:  156 SYGFEMETFEFLNLLQVHGFPKVMGVLTHLDKFKDVKALRKTKKQLKSRFWTEIYDGAKLFYLSGLIHGKYSKREI 231
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BLAST of mRNA_H-paniculata_contig26481.7228.1 vs. uniprot
Match: UPI00053F4B98 (ribosome biogenesis protein BMS1 homolog isoform X1 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F4B98)

HSP 1 Score: 122 bits (305), Expect = 1.490e-30
Identity = 55/76 (72.37%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 SFGFEMETFEFLTILQVHGFPKVMGVLTYLDKFDDVKALRVTKKKLKPRFWTEVYSGAKVFGMGGDINGKYHKTEV 228
            S+GFEMETFEFL I+QVHGFP+VMGVLT+LDKF DVK LR TK++LK RFWTE+Y GAK+F + G I+GKYHK E+
Sbjct:  157 SYGFEMETFEFLNIMQVHGFPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYHKREI 232
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BLAST of mRNA_H-paniculata_contig26481.7228.1 vs. uniprot
Match: A0A6P9B6E6_PANGU (ribosome biogenesis protein BMS1 homolog n=1 Tax=Pantherophis guttatus TaxID=94885 RepID=A0A6P9B6E6_PANGU)

HSP 1 Score: 112 bits (281), Expect = 3.560e-30
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    1 SFGFEMETFEFLTILQVHGFPKVMGVLTYLDKFDDVKALRVTKKKLKPRFWTEVYSGAKVFGMGGDINGKYHKTEV 228
            SFGFEMETFEFL I QVHGFPK+MGVLT+LD F + K LR TKK+LK RFWTEVY GAK+F + G ++G Y K E+
Sbjct:   53 SFGFEMETFEFLNICQVHGFPKIMGVLTHLDSFKNNKQLRKTKKRLKHRFWTEVYQGAKLFYLSGMVHGDYQKQEI 128
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BLAST of mRNA_H-paniculata_contig26481.7228.1 vs. uniprot
Match: A0A0B0NLD9_GOSAR (Ribosome biogenesis BMS1 n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A0B0NLD9_GOSAR)

HSP 1 Score: 119 bits (298), Expect = 5.350e-30
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    1 SFGFEMETFEFLTILQVHGFPKVMGVLTYLDKFDDVKALRVTKKKLKPRFWTEVYSGAKVFGMGGDINGKYHKTEV 228
            S+GFEMETFEFL ILQVHGFPKVMGVLT+LDKF DVK L+ TK++LK RFWTE+Y GAK+F + G I+GKY K EV
Sbjct:  159 SYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDVKKLKKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYPKREV 234
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BLAST of mRNA_H-paniculata_contig26481.7228.1 vs. uniprot
Match: A0A6J8CBW0_MYTCO (BMS1 n=4 Tax=Mytilus TaxID=6548 RepID=A0A6J8CBW0_MYTCO)

HSP 1 Score: 118 bits (295), Expect = 5.750e-30
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:    1 SFGFEMETFEFLTILQVHGFPKVMGVLTYLDKFDDVKALRVTKKKLKPRFWTEVYSGAKVFGMGGDINGKYHKTEV 228
            SFGFEMETFEFL I QVHGFP++MGVLT+LD F D K +R TKK+LK RFWTEVY GAK+F + G +NG+Y KTEV
Sbjct:  154 SFGFEMETFEFLNICQVHGFPRIMGVLTHLDSFKDNKKMRKTKKRLKHRFWTEVYQGAKLFYLSGMVNGEYQKTEV 229
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BLAST of mRNA_H-paniculata_contig26481.7228.1 vs. uniprot
Match: A0A6A4NMH7_LUPAL (Putative P-loop containing nucleoside triphosphate hydrolase, bms1/Tsr1-type G n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4NMH7_LUPAL)

HSP 1 Score: 117 bits (293), Expect = 6.320e-30
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:    1 SFGFEMETFEFLTILQVHGFPKVMGVLTYLDKFDDVKALRVTKKKLKPRFWTEVYSGAKVFGMGGDINGKYHKTEV 228
             +GFEMETFEFL ILQVHGFPKVMGVLT+LD+F D K LR TK++LK RFWTE+Y GAK+F + G INGKY K EV
Sbjct:  161 GYGFEMETFEFLNILQVHGFPKVMGVLTHLDQFKDAKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLINGKYVKREV 236
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BLAST of mRNA_H-paniculata_contig26481.7228.1 vs. uniprot
Match: A0A6J0P078_RAPSA (ribosome biogenesis protein BMS1 homolog n=2 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0P078_RAPSA)

HSP 1 Score: 120 bits (300), Expect = 7.040e-30
Identity = 56/76 (73.68%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 SFGFEMETFEFLTILQVHGFPKVMGVLTYLDKFDDVKALRVTKKKLKPRFWTEVYSGAKVFGMGGDINGKYHKTEV 228
            S+GFEMETFEFL I+QVHGFPKVMGVLT+LDKF+DVK LR TKK+LK RFWTE+Y GAK+F + G I+GKY + EV
Sbjct:  159 SYGFEMETFEFLNIMQVHGFPKVMGVLTHLDKFNDVKKLRKTKKRLKHRFWTEIYDGAKLFYLSGLIHGKYLELEV 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26481.7228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2C7_9PHAE1.710e-3686.84Bms1-type G domain-containing protein n=2 Tax=Ecto... [more]
A0A392NWD7_9FABA4.010e-3273.68Ribosome biogenesis protein BMS1 (Fragment) n=1 Ta... [more]
UPI0000452A599.710e-3271.05hypothetical protein n=1 Tax=Cryptosporidium homin... [more]
D8QXE0_SELML5.850e-3175.00Bms1-type G domain-containing protein n=4 Tax=Sela... [more]
UPI00053F4B981.490e-3072.37ribosome biogenesis protein BMS1 homolog isoform X... [more]
A0A6P9B6E6_PANGU3.560e-3068.42ribosome biogenesis protein BMS1 homolog n=1 Tax=P... [more]
A0A0B0NLD9_GOSAR5.350e-3073.68Ribosome biogenesis BMS1 n=1 Tax=Gossypium arboreu... [more]
A0A6J8CBW0_MYTCO5.750e-3071.05BMS1 n=4 Tax=Mytilus TaxID=6548 RepID=A0A6J8CBW0_M... [more]
A0A6A4NMH7_LUPAL6.320e-3072.37Putative P-loop containing nucleoside triphosphate... [more]
A0A6J0P078_RAPSA7.040e-3073.68ribosome biogenesis protein BMS1 homolog n=2 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26481contigH-paniculata_contig26481:3017..3244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3e-28
Seed eggNOG ortholog2880.D7G454
Preferred nameBMS1
KEGG koko:K14569,ko:K15009
KEGG Pathwayko03008,ko04724,map03008,map04724
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000462,GO:0000469,GO:0000478,GO:0000479,GO:0001882,GO:0001883,GO:0001959,GO:0001960,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006417,GO:0006508,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009605,GO:0009607,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010648,GO:0016032,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018995,GO:0019001,GO:0019048,GO:0019049,GO:0019054,GO:0019056,GO:0019057,GO:0019058,GO:0019079,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019785,GO:0020012,GO:0022613,GO:0023051,GO:0023057,GO:0030430,GO:0030490,GO:0030515,GO:0030682,GO:0030683,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033643,GO:0033646,GO:0033647,GO:0033648,GO:0034248,GO:0034470,GO:0034511,GO:0034641,GO:0034660,GO:0035639,GO:0035821,GO:0036094,GO:0039502,GO:0039503,GO:0039506,GO:0039507,GO:0039519,GO:0039520,GO:0039579,GO:0039604,GO:0039606,GO:0039611,GO:0039644,GO:0039648,GO:0039653,GO:0039656,GO:0039657,GO:0039690,GO:0039694,GO:0042025,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043656,GO:0043657,GO:0044003,GO:0044068,GO:0044073,GO:0044085,GO:0044092,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044359,GO:0044362,GO:0044403,GO:0044413,GO:0044414,GO:0044415,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044501,GO:0045088,GO:0045824,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050690,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051252,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051817,GO:0051832,GO:0051833,GO:0051834,GO:0052026,GO:0052027,GO:0052029,GO:0052031,GO:0052037,GO:0052055,GO:0052056,GO:0052167,GO:0052170,GO:0052173,GO:0052200,GO:0052204,GO:0052205,GO:0052250,GO:0052255,GO:0052261,GO:0052306,GO:0052309,GO:0052312,GO:0052493,GO:0052552,GO:0052553,GO:0052561,GO:0052562,GO:0052564,GO:0052572,GO:0060255,GO:0060338,GO:0060339,GO:0060759,GO:0060761,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0071704,GO:0071840,GO:0075109,GO:0075111,GO:0075112,GO:0075114,GO:0075136,GO:0075528,GO:0080090,GO:0080134,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.U3 snoRNA binding
EggNOG OGsCOG5192@1,KOG1951@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size228
Cds size213
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929792.7966325-UTR-H-paniculata_contig26481:3016..30311622929792.7966325-UTR-H-paniculata_contig26481:3016..3031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26481 3017..3031 +
1691481013.0378377-UTR-H-paniculata_contig26481:3016..30311691481013.0378377-UTR-H-paniculata_contig26481:3016..3031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26481 3017..3031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929792.8115919-CDS-H-paniculata_contig26481:3031..32441622929792.8115919-CDS-H-paniculata_contig26481:3031..3244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26481 3032..3244 +
1691481013.0506077-CDS-H-paniculata_contig26481:3031..32441691481013.0506077-CDS-H-paniculata_contig26481:3031..3244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26481 3032..3244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26481.7228.1prot_H-paniculata_contig26481.7228.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26481 3032..3244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26481.7228.1

>prot_H-paniculata_contig26481.7228.1 ID=prot_H-paniculata_contig26481.7228.1|Name=mRNA_H-paniculata_contig26481.7228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
METFEFLTILQVHGFPKVMGVLTYLDKFDDVKALRVTKKKLKPRFWTEVY
SGAKVFGMGGDINGKYHKTEV
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mRNA from alignment at H-paniculata_contig26481:3017..3244+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26481.7228.1 ID=mRNA_H-paniculata_contig26481.7228.1|Name=mRNA_H-paniculata_contig26481.7228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig26481:3017..3244+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTCGGGTTCGAGATGGAGACGTTCGAGTTCCTCACCATCTTGCAGGT
GCATGGGTTTCCCAAGGTGATGGGCGTGCTGACCTACCTGGACAAATTCG
ACGATGTGAAGGCGCTCAGAGTCACCAAGAAAAAGCTCAAGCCGAGATTT
TGGACCGAGGTGTACAGCGGCGCCAAGGTCTTCGGCATGGGTGGGGACAT
AAATGGGAAGTACCACAAGACGGAAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig26481:3017..3244+

>mRNA_H-paniculata_contig26481.7228.1 ID=mRNA_H-paniculata_contig26481.7228.1|Name=mRNA_H-paniculata_contig26481.7228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig26481:3017..3244+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGACGTTCGAGTTCCTCACCATCTTGCAGGTGCATGGGTTTCCCAA
GGTGATGGGCGTGCTGACCTACCTGGACAAATTCGACGATGTGAAGGCGC
TCAGAGTCACCAAGAAAAAGCTCAAGCCGAGATTTTGGACCGAGGTGTAC
AGCGGCGCCAAGGTCTTCGGCATGGGTGGGGACATAAATGGGAAGTACCA
CAAGACGGAAGTGATGGAGACGTTCGAGTTCCTCACCATCTTGCAGGTGC
ATGGGTTTCCCAAGGTGATGGGCGTGCTGACCTACCTGGACAAATTCGAC
GATGTGAAGGCGCTCAGAGTCACCAAGAAAAAGCTCAAGCCGAGATTTTG
GACCGAGGTGTACAGCGGCGCCAAGGTCTTCGGCATGGGTGGGGACATAA
ATGGGAAGTACCACAAGACGGAAGTG
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