mRNA_H-paniculata_contig11119.721.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11119.721.1
Unique NamemRNA_H-paniculata_contig11119.721.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11119.721.1 vs. uniprot
Match: A0A6H5JUG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG0_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.230e-39
Identity = 98/236 (41.53%), Postives = 124/236 (52.54%), Query Frame = 1 
Query:  205 EYRLVDHVDQLQ---------------QPIRPPHLFSLPAPGGDICLVVDENGCYHAVRESFPPLGMPVSESGIVDTEVNVIEDMLFGTRFYLSDGTIRGRLCPGG-TAGPLLR-LARF------------LRTITPL---------------SWARQFGRPNGAKASIQNGRPDDTLEVLPVKIHTDGSLIIMLPPAESV--------DAGSGSTTPGTAAPFSVERCGLAGYDY 756
            +Y LV+  DQL+               +P+ PPHLF +PAPGGD+CLVVDEN  Y+A+R+ FPP G+PVS++G+VD++V+ I D LFGTRF L DGT+RG  CPGG TAGPLL  LAR              R+I  L               SWA  F RP  +   I+      TLEVL V    DGSL + LP   S          A +G  +P   A     +C L GYD+
Sbjct:   59 QYTLVESTDQLEXXXXXXXXXXGNEWFEPVPPPHLFRIPAPGGDVCLVVDENKSYYAMRDCFPPFGVPVSQTGVVDSQVDAIGDSLFGTRFNLEDGTVRGPWCPGGGTAGPLLLWLARHRRHRLFTLRIGVARSINHLTHHLFLFSKQRRARGSWATSF-RPPSSPNFIEK-TTTTTLEVLTVTEQLDGSLTVALPRCSSALAPGGNGNSAANGRPSPMHNASTFAAKCDLEGYDF 292
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BLAST of mRNA_H-paniculata_contig11119.721.1 vs. uniprot
Match: D7FVM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM6_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 6.490e-38
Identity = 92/196 (46.94%), Postives = 111/196 (56.63%), Query Frame = 1 
Query:  220 DHVDQLQQP----------IRPPHLFSLPAPGGDICLVVDENGCYHAVRESFPPLGMPVSESGIVDTEVNVIEDMLFGTRFYLSDGTIRGRLCPGG-TAGPLL-RLARF------------LRTITPL---------------SWARQFGRPNGAKASIQNGRPDDTLEVLPVKIHTDGSLIIMLPPAESVDAGSG 690
            D +D+LQQP          + PPHLF +PAPGGD+CLVVDE   Y+A+R+ FPP G+PVS++G+VD++V+ I D LFGTRF L DGT+RG  CPGG TAGPLL RLAR              R+I  L               SWA  F  P+   A   N R   TLEVL V    DGSL + LP   SV A  G
Sbjct:   68 DQLDKLQQPRHHGNECSGPVPPPHLFRIPAPGGDVCLVVDEKKNYYAMRDCFPPFGVPVSQTGVVDSQVDAIGDSLFGTRFNLKDGTVRGPWCPGGGTAGPLLLRLARHRRHRLFNQCIGVARSINRLTHHLFSISKQRRARGSWATYFRPPSSPNA---NERTTTTLEVLTVTEQPDGSLTVALPRCPSVLAPGG 260
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BLAST of mRNA_H-paniculata_contig11119.721.1 vs. uniprot
Match: A0A836CM18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM18_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.160e-24
Identity = 58/95 (61.05%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:  223 HVDQLQQPIR---PPHLFSLPAPGGDICLVVDENGCYHAVRESFPPLGMPVSESGIVDTEVNVIEDMLFGTRFYLSDGTIRGRLCPGGTAGPLLR 498
            H DQL  P+    PP +FS+P   G +CLVVDENG  HA+R+S PPLG P+S +G+VD+E+ VIED+ FGTRFYLS G  RGRLCPGGTA   LR
Sbjct:  658 HKDQLA-PLGAPPPPLVFSIPVLCGTVCLVVDENGKSHAMRDSCPPLGSPISATGVVDSEIGVIEDLRFGTRFYLSSGAPRGRLCPGGTAPRALR 751
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11119.721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JUG0_9PHAE1.230e-3941.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM6_ECTSI6.490e-3846.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM18_9STRA2.160e-2461.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11119contigH-paniculata_contig11119:1989..3818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionRieske [2Fe-2S] iron-sulphur domain
Ec32 orthologEc-01_009460.1
Exons2
Model size1028
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11119.721.1prot_H-paniculata_contig11119.721.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11119 2258..3797 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928818.3731616-UTR-H-paniculata_contig11119:1988..22571622928818.3731616-UTR-H-paniculata_contig11119:1988..2257Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11119 1989..2257 -
1691480632.1984339-UTR-H-paniculata_contig11119:1988..22571691480632.1984339-UTR-H-paniculata_contig11119:1988..2257Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11119 1989..2257 -
1622928818.426565-UTR-H-paniculata_contig11119:3797..38181622928818.426565-UTR-H-paniculata_contig11119:3797..3818Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11119 3798..3818 -
1691480632.2318609-UTR-H-paniculata_contig11119:3797..38181691480632.2318609-UTR-H-paniculata_contig11119:3797..3818Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11119 3798..3818 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928818.3873372-CDS-H-paniculata_contig11119:2257..26231622928818.3873372-CDS-H-paniculata_contig11119:2257..2623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11119 2258..2623 -
1691480632.2122624-CDS-H-paniculata_contig11119:2257..26231691480632.2122624-CDS-H-paniculata_contig11119:2257..2623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11119 2258..2623 -
1622928818.4016404-CDS-H-paniculata_contig11119:3425..37971622928818.4016404-CDS-H-paniculata_contig11119:3425..3797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11119 3426..3797 -
1691480632.2234604-CDS-H-paniculata_contig11119:3425..37971691480632.2234604-CDS-H-paniculata_contig11119:3425..3797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11119 3426..3797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11119.721.1

>prot_H-paniculata_contig11119.721.1 ID=prot_H-paniculata_contig11119.721.1|Name=mRNA_H-paniculata_contig11119.721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=246bp
MRTRSRFVLRCFPGGKLLIPFFLLCFSLLPNYDNAFSFPPLIILTSNNNH
RRCSTLRSHHHEYRLVDHVDQLQQPIRPPHLFSLPAPGGDICLVVDENGC
YHAVRESFPPLGMPVSESGIVDTEVNVIEDMLFGTRFYLSDGTIRGRLCP
GGTAGPLLRLARFLRTITPLSWARQFGRPNGAKASIQNGRPDDTLEVLPV
KIHTDGSLIIMLPPAESVDAGSGSTTPGTAAPFSVERCGLAGYDY*
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mRNA from alignment at H-paniculata_contig11119:1989..3818-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11119.721.1 ID=mRNA_H-paniculata_contig11119.721.1|Name=mRNA_H-paniculata_contig11119.721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1830bp|location=Sequence derived from alignment at H-paniculata_contig11119:1989..3818- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATATAAAGTCAACCACAATATGCGAACGAGATCACGCTTCGTCTTGCG
TTGCTTCCCAGGGGGAAAACTTCTCATTCCATTCTTCTTGCTCTGTTTCT
CCTTGTTGCCCAATTATGACAACGCGTTTTCCTTTCCCCCATTAATAATT
TTGACCAGCAACAACAACCATCGCCGATGTTCAACTCTGAGATCCCATCA
TCATGAGTACCGTCTGGTGGATCACGTCGATCAGCTGCAACAGCCGATAC
GCCCCCCTCACCTCTTCTCCCTCCCTGCCCCGGGAGGAGATATTTGCCTG
GTGGTAGATGAGAATGGATGTTATCACGCTGTACGCGAAAGCTTCCCTCC
TCTTGGAATGCCGGTGTCGGAAAGTGGTATAGTCGACACAGAGGTATGTT
GTCTGAAAAGTTCAAGATGTTGATATATAGTGTATCTACGGTACAGTGAA
CCAATTCCTTACAACTAAAAATATAGAAAAGAAAGTGATGCCTACGACGG
CCTACATTGTGATCTATTGAGACGGGACTTGCCACGTTTCAAACGGACAG
TCTAACACAGACAGACAATAATGGGAATGGTTCTGCCCGCAATGACTGCA
CCCCACTCGACATTTCTTGTTGGGTGCCTTTTTAGTTGCGAAACATCCCA
CTGCGCTACAATAGAGCATATTCATTGCCTAATCCGATATGCGTTCTCAC
GTAGATCCATTTTGTGTCCTTACATAGACTAGCAAGGCGCCCTGGGTTAT
ACATTCTGTGGAAATCTCGCTGTTGTGTCTGGTTTTGTTGTACGCTTGTC
ATTTGTGAAATATCTGTCAAGTAGCTATACTTTGGAGATAGCAACGGCTT
TCTAAAATCAGGGTGCTTTACACCAGCGGTGCACCGTAGAAAGCCCACAG
GTGACACCAAATGATACAGTAGTCCCCTTCCCACTCGTGAAAAAAACAGC
CAAGCAGTCGTTCGCTACGACTGTACGCAACAACTACCTGTATGTCCACA
ACGATGTACAAATTATGCTCGGACGCCGAGATAGACTATTCAAAACCGTC
GACCACATTAGTCTATTGTAGCAGCCAAGTAAGTACCCATGACTCATGAT
GTGAGGCAATATTTACAACATATATATTTAAGGCCGTATTTTCGTTCGAC
GAGAGAAGTCCTTCCTTTCTCCTGTATATACGCTCTCACGCAAAGGTGAA
CGTCATCGAAGACATGTTGTTTGGAACCAGATTCTACCTCTCCGACGGGA
CCATACGCGGTCGTTTGTGTCCCGGCGGTACGGCTGGACCTCTCCTTCGA
CTCGCCCGATTTCTCCGCACCATCACCCCCCTATCGTGGGCACGGCAATT
TGGGCGACCAAACGGTGCCAAAGCAAGTATTCAGAATGGGCGCCCCGACG
ATACGCTAGAGGTACTTCCAGTGAAGATACACACGGACGGTAGCTTGATC
ATCATGTTACCACCGGCTGAAAGTGTCGACGCGGGGTCGGGTTCAACAAC
ACCTGGGACGGCTGCACCGTTTTCTGTAGAGCGTTGTGGTCTGGCTGGGT
ATGACTACTGAGCTTATTTGTTTCTCTACATCTGCGTGCGTATGCAACAC
TACTTGGTATCTTGTCATTTAATGGGAGGAATCATTTGACGATGAACTGA
AAGTCACTGACGGTGTGTCGCTCATCCGGAGGTTGAAATGGTGCTACCCA
AACCATGGGCCCGGGAATTTTCTAATTCGATAAAGTTTGGGTGGGCCACG
ATAGAGTGGATGCATGAACGCGGTTCAACCGTGTTCCTTCAGTGTACAGT
GCATGACATTAGTTGACTTTTCCATCGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig11119:1989..3818-

>mRNA_H-paniculata_contig11119.721.1 ID=mRNA_H-paniculata_contig11119.721.1|Name=mRNA_H-paniculata_contig11119.721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at H-paniculata_contig11119:1989..3818- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAACGAGATCACGCTTCGTCTTGCGTTGCTTCCCAGGGGGAAAACT
TCTCATTCCATTCTTCTTGCTCTGTTTCTCCTTGTTGCCCAATTATGACA
ACGCGTTTTCCTTTCCCCCATTAATAATTTTGACCAGCAACAACAACCAT
CGCCGATGTTCAACTCTGAGATCCCATCATCATGAGTACCGTCTGGTGGA
TCACGTCGATCAGCTGCAACAGCCGATACGCCCCCCTCACCTCTTCTCCC
TCCCTGCCCCGGGAGGAGATATTTGCCTGGTGGTAGATGAGAATGGATGT
TATCACGCTGTACGCGAAAGCTTCCCTCCTCTTGGAATGCCGGTGTCGGA
AAGTGGTATAGTCGACACAGAGATGCGAACGAGATCACGCTTCGTCTTGC
GTTGCTTCCCAGGGGGAAAACTTCTCATTCCATTCTTCTTGCTCTGTTTC
TCCTTGTTGCCCAATTATGACAACGCGTTTTCCTTTCCCCCATTAATAAT
TTTGACCAGCAACAACAACCATCGCCGATGTTCAACTCTGAGATCCCATC
ATCATGAGTACCGTCTGGTGGATCACGTCGATCAGCTGCAACAGCCGATA
CGCCCCCCTCACCTCTTCTCCCTCCCTGCCCCGGGAGGAGATATTTGCCT
GGTGGTAGATGAGAATGGATGTTATCACGCTGTACGCGAAAGCTTCCCTC
CTCTTGGAATGCCGGTGTCGGAAAGTGGTATAGTCGACACAGAGGTGAAC
GTCATCGAAGACATGTTGTTTGGAACCAGATTCTACCTCTCCGACGGGAC
CATACGCGGTCGTTTGTGTCCCGGCGGTACGGCTGGACCTCTCCTTCGAC
TCGCCCGATTTCTCCGCACCATCACCCCCCTATCGTGGGCACGGCAATTT
GGGCGACCAAACGGTGCCAAAGCAAGTATTCAGAATGGGCGCCCCGACGA
TACGCTAGAGGTACTTCCAGTGAAGATACACACGGACGGTAGCTTGATCA
TCATGTTACCACCGGCTGAAAGTGTCGACGCGGGGTCGGGTTCAACAACA
CCTGGGACGGCTGCACCGTTTTCTGTAGAGCGTTGTGGTCTGGCTGGGTA
TGACTACTGAGTGAACGTCATCGAAGACATGTTGTTTGGAACCAGATTCT
ACCTCTCCGACGGGACCATACGCGGTCGTTTGTGTCCCGGCGGTACGGCT
GGACCTCTCCTTCGACTCGCCCGATTTCTCCGCACCATCACCCCCCTATC
GTGGGCACGGCAATTTGGGCGACCAAACGGTGCCAAAGCAAGTATTCAGA
ATGGGCGCCCCGACGATACGCTAGAGGTACTTCCAGTGAAGATACACACG
GACGGTAGCTTGATCATCATGTTACCACCGGCTGAAAGTGTCGACGCGGG
GTCGGGTTCAACAACACCTGGGACGGCTGCACCGTTTTCTGTAGAGCGTT
GTGGTCTGGCTGGGTATGACTACTGA
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