mRNA_H-paniculata_contig26381.7203.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26381.7203.1
Unique NamemRNA_H-paniculata_contig26381.7203.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26381.7203.1 vs. uniprot
Match: D7FI34_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI34_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.290e-18
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 LQELHLAIFQGDTDKVEEVVARGDVAALNEADKHGQTPLHLACYK 135
            LQELHLAIFQGDT KVEEVVARGD  AL+EAD+HGQTPLHLACYK
Sbjct:   50 LQELHLAIFQGDTAKVEEVVARGDARALSEADRHGQTPLHLACYK 94
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BLAST of mRNA_H-paniculata_contig26381.7203.1 vs. uniprot
Match: A0A6H5JGS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS5_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.030e-18
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 LQELHLAIFQGDTDKVEEVVARGDVAALNEADKHGQTPLHLACYK 135
            LQELHLAIFQGDT KVEEVVARGD  AL+EAD+HGQTPLHLACYK
Sbjct:  423 LQELHLAIFQGDTAKVEEVVARGDARALSEADRHGQTPLHLACYK 467
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26381.7203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI34_ECTSI1.290e-1888.89Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JGS5_9PHAE5.030e-1888.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26381contigH-paniculata_contig26381:1377..1511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue6.9e-15
Seed eggNOG ortholog2880.D7FI34
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-10_003340.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.3309588-CDS-H-paniculata_contig26381:1376..15111622929789.3309588-CDS-H-paniculata_contig26381:1376..1511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26381 1377..1511 +
1691481011.3689063-CDS-H-paniculata_contig26381:1376..15111691481011.3689063-CDS-H-paniculata_contig26381:1376..1511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26381 1377..1511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26381.7203.1prot_H-paniculata_contig26381.7203.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26381 1377..1511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26381.7203.1

>prot_H-paniculata_contig26381.7203.1 ID=prot_H-paniculata_contig26381.7203.1|Name=mRNA_H-paniculata_contig26381.7203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
LQELHLAIFQGDTDKVEEVVARGDVAALNEADKHGQTPLHLACYK
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mRNA from alignment at H-paniculata_contig26381:1377..1511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26381.7203.1 ID=mRNA_H-paniculata_contig26381.7203.1|Name=mRNA_H-paniculata_contig26381.7203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig26381:1377..1511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCAAGAACTGCATCTTGCAATATTCCAAGGGGACACGGACAAGGTAGA
GGAGGTGGTTGCGCGTGGCGACGTAGCGGCGTTGAACGAGGCGGATAAGC
ACGGTCAAACGCCGTTGCATCTCGCTTGCTACAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig26381:1377..1511+

>mRNA_H-paniculata_contig26381.7203.1 ID=mRNA_H-paniculata_contig26381.7203.1|Name=mRNA_H-paniculata_contig26381.7203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig26381:1377..1511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCAAGAACTGCATCTTGCAATATTCCAAGGGGACACGGACAAGGTAGA
GGAGGTGGTTGCGCGTGGCGACGTAGCGGCGTTGAACGAGGCGGATAAGC
ACGGTCAAACGCCGTTGCATCTCGCTTGCTACAAGCTGCAAGAACTGCAT
CTTGCAATATTCCAAGGGGACACGGACAAGGTAGAGGAGGTGGTTGCGCG
TGGCGACGTAGCGGCGTTGAACGAGGCGGATAAGCACGGTCAAACGCCGT
TGCATCTCGCTTGCTACAAG
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