mRNA_H-paniculata_contig2636.7199.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2636.7199.1
Unique NamemRNA_H-paniculata_contig2636.7199.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2636.7199.1 vs. uniprot
Match: A0A6H5L264_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L264_9PHAE)

HSP 1 Score: 400 bits (1027), Expect = 6.950e-135
Identity = 222/264 (84.09%), Postives = 238/264 (90.15%), Query Frame = 1 
Query:    1 RHVSFADIAGAEDAKAELAELVDFLGEGAARYADVGARLPKGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGLNSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPGVLDPALTRPGRFDRHVTVGLPNAAGRRAILELHCKKVRISE-RVD----LDAIARSTSGFAGAELASIVNEAAMLAARHSEVQVGQEHLLLAVARTRAYREEYNVDGSS 777
            R VSFADIAGA++AK EL ELVDFL    ARYADVGARLP+GVLLSGPSGTGKTLLARAMAAEA VPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGG+NSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRP VLDPALTRPGRFDRHVTVGLP+A GRRAILE+HC+KVR+   R D    L+ IAR T+GF+GAELA++VNEAA+LAARHSEV+VG  HL +AVARTRAYREEY V  SS
Sbjct:   31 RSVSFADIAGADEAKVELKELVDFL-TFPARYADVGARLPRGVLLSGPSGTGKTLLARAMAAEARVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPEVLDPALTRPGRFDRHVTVGLPDAPGRRAILEVHCRKVRMQGGRQDTIAVLENIARVTAGFSGAELANVVNEAAILAARHSEVEVGVGHLRMAVARTRAYREEYGVAPSS 293
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BLAST of mRNA_H-paniculata_contig2636.7199.1 vs. uniprot
Match: D8LSS7_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSS7_ECTSI)

HSP 1 Score: 360 bits (923), Expect = 2.050e-117
Identity = 199/233 (85.41%), Postives = 214/233 (91.85%), Query Frame = 1 
Query:    1 RHVSFADIAGAEDAKAELAELVDFLGEGAARYADVGARLPKGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGLNSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPGVLDPALTRPGRFDRHVTVGLPNAAGRRAILELHCKKVRIS-ERVD----LDAIARSTSGFAGAELASIVNEAAMLAAR 684
            R VSFADIAGA++AK EL ELVDFL    ARYAD+GARLP+GVLLSGPSGTGKTLLARAMAAEA VPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGG+NSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRP VLDPALTRPGRFDRHVTVGLP+A GRRAILE+HC+KVR+  ER D    L+ IAR T+GF+GAELA++VNEAA+LAAR
Sbjct:  187 RSVSFADIAGADEAKVELKELVDFL-TFPARYADIGARLPRGVLLSGPSGTGKTLLARAMAAEARVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPEVLDPALTRPGRFDRHVTVGLPDAPGRRAILEVHCRKVRMQGERQDTIAVLENIARVTAGFSGAELANVVNEAAILAAR 418
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BLAST of mRNA_H-paniculata_contig2636.7199.1 vs. uniprot
Match: A0A835Z9E9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9E9_9STRA)

HSP 1 Score: 304 bits (779), Expect = 9.010e-98
Identity = 170/265 (64.15%), Postives = 202/265 (76.23%), Query Frame = 1 
Query:   49 ELAELVDFLGEGAARYADVGARLPKGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGLNSNDEREQTLNQLLTEMDGFDSEGRS--------------VLVVAATNRPGVLDPALTRPGRFDRHVTVGLPNAAGRRAILELHCKKVRISERVDLDAIARSTSGFAGAELASIVNEAAMLAARHSEVQVGQEHLLLAVARTRAYREEYNVDGSSPRSFLEMD 801
            ELAE+VDFL + A RY  +GARLP+G+LLSGPSGTGKTLLARA+AAE+ VPF SCSASDFVEMLVGRGA+RVRDLF+RG A+ P IIF+DELDALAK RGGLNSNDEREQTLNQLLTE+DGFDS   +                 +AATNRP VLDPALTRPGRFDRHV VGLP+  GR +IL +H +KVR    VDL  +AR T+GF+GAELA+IVNEAA+LA R     V  EH+  A++R +AYR  Y+V+    R+ L++D
Sbjct:   15 ELAEVVDFLRD-ARRYEAMGARLPRGILLSGPSGTGKTLLARAVAAESRVPFISCSASDFVEMLVGRGASRVRDLFKRGAAAAPCIIFVDELDALAKARGGLNSNDEREQTLNQLLTELDGFDSSVAASAXXXXXXXXXXXXXXXIAATNRPEVLDPALTRPGRFDRHVHVGLPDERGRVSILTVHMRKVRAGPDVDLRTVARETAGFSGAELANIVNEAALLAVRGGGESVQAEHMRSALSRAKAYRSLYSVEY---RTMLQID 275
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BLAST of mRNA_H-paniculata_contig2636.7199.1 vs. uniprot
Match: A0A6G0WHW9_9STRA (AAA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHW9_9STRA)

HSP 1 Score: 299 bits (766), Expect = 1.120e-93
Identity = 163/258 (63.18%), Postives = 196/258 (75.97%), Query Frame = 1 
Query:    7 VSFADIAGAEDAKAELAELVDFLGEGAARYADVGARLPKGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGLNSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPGVLDPALTRPGRFDRHVTVGLPNAAGRRAILELHCKKVRISERVDLDAIA--RSTSGFAGAELASIVNEAAMLAARHSEVQVGQEHLLLAVARTRAYREEYNVDGS 774
            +SFADIAG + AK EL E+VDFL +   RY  +GA++PKGVLL GPSGTGKT+LARA+AAEAGVPF  CSASDFVEMLVGRGA+RVRDLF +       IIFIDE+DALAK RGGLNSNDEREQTLNQLLTEMDGF+     VLV+AATNRP VLDPAL RPGRFDRHV VGLP+A GR AIL +H K++R+  RV +  +A  R   G +GA+LA +VNEAA++A R  +  V  +H L+A+AR+   ++     GS
Sbjct:  171 ISFADIAGIDAAKQELEEIVDFL-KRPQRYEAIGAKIPKGVLLCGPSGTGKTMLARAVAAEAGVPFLFCSASDFVEMLVGRGASRVRDLFTQASQHAKCIIFIDEIDALAKARGGLNSNDEREQTLNQLLTEMDGFEGHTEGVLVIAATNRPHVLDPALLRPGRFDRHVFVGLPDATGREAILRVHVKRIRLHSRVSIKELAVNRQLEGASGAQLACLVNEAALMAVRTGDTSVQMDHFLMAMARSGDSQQATTAYGS 427
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BLAST of mRNA_H-paniculata_contig2636.7199.1 vs. uniprot
Match: A0A3R7G257_9STRA (AAA domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G257_9STRA)

HSP 1 Score: 296 bits (759), Expect = 9.540e-93
Identity = 164/263 (62.36%), Postives = 198/263 (75.29%), Query Frame = 1 
Query:    1 RHVSFADIAGAEDAKAELAELVDFLGEGAARYADVGARLPKGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGLNSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPGVLDPALTRPGRFDRHVTVGLPNAAGRRAILELHCKKVRISERVDLDAIARSTSGF---AGAELASIVNEAAMLAARHSEVQVGQEHLLLAVARTRAYREEY-NVDGSS 777
            +H+SF D+AG + A+ EL E+VDFL    ARY  +GA++PKGV+L GPSGTGKTLLARA+A+EAGV F  CSASDFVEMLVGRGAARVRDLF +       IIFIDE+DALAK RGG NSNDEREQTLNQLLTEMDGF+     V+V+AATNRP VLDPAL RPGRFDRHV VGLP+A GR AILE+HC+ VR+ + V+L  +A         +GA+LAS+VNEAA+LA RH +  V   HL LA+   RA+  +  ++ GSS
Sbjct:  153 QHISFDDVAGIDVARKELEEVVDFL-RNPARYQAIGAKVPKGVMLCGPSGTGKTLLARAVASEAGVAFLFCSASDFVEMLVGRGAARVRDLFTQASQYPQCIIFIDEIDALAKARGGFNSNDEREQTLNQLLTEMDGFEGNANGVIVIAATNRPEVLDPALCRPGRFDRHVYVGLPDAKGREAILEVHCRNVRLDDDVNLSVVAEECGQMGQRSGAQLASLVNEAALLAVRHGDTTVKHAHLELAM--NRAFESQTRSIAGSS 412
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BLAST of mRNA_H-paniculata_contig2636.7199.1 vs. uniprot
Match: M4BWX0_HYAAE (AAA domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BWX0_HYAAE)

HSP 1 Score: 292 bits (748), Expect = 1.210e-92
Identity = 161/269 (59.85%), Postives = 199/269 (73.98%), Query Frame = 1 
Query:    1 RHVSFADIAGAEDAKAELAELVDFLGEGAARYADVGARLPKGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGLNSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPGVLDPALTRPGRFDRHVTVGLPNAAGRRAILELHCKKVRISERVDLDAIARS---TSGFAGAELASIVNEAAMLAARHSEVQVGQEHLLLAVARTRAYREEYN-VDGSSPRSFLE 795
            + ++F D+AG + A+ EL E+VDFL    ARY  +GA++PKGVLL GPSGTGKTLLARA+A+EAGV F  CSASDFVEMLVGRGAARVRDLF +       IIFIDE+DALAKVRGGLNSNDEREQTLNQLLTEMDGF+     ++++AATNRP VLDPAL RPGRFDRHV VGLP+  GR  IL++HC++VR+   VDL  +A     +   +GA+LAS+VNEAA+LA RH E  +  +H+   +A  RA+  +   + GSS    LE
Sbjct:   39 QRITFNDVAGIDGARKELEEVVDFLRH-PARYLAIGAKVPKGVLLCGPSGTGKTLLARAVASEAGVAFLFCSASDFVEMLVGRGAARVRDLFTQASQFPQCIIFIDEIDALAKVRGGLNSNDEREQTLNQLLTEMDGFEGNADGIILIAATNRPEVLDPALCRPGRFDRHVYVGLPDTQGREEILKVHCRRVRLDNEVDLSVVAEECGHSGQRSGAQLASLVNEAALLAVRHGETSI--KHMHFELAMNRAFESQTRKISGSSFEVTLE 304
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BLAST of mRNA_H-paniculata_contig2636.7199.1 vs. uniprot
Match: A0A1V9YPE2_9STRA (Cell division protease ftsH n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPE2_9STRA)

HSP 1 Score: 296 bits (759), Expect = 1.370e-92
Identity = 161/248 (64.92%), Postives = 193/248 (77.82%), Query Frame = 1 
Query:    1 RHVSFADIAGAEDAKAELAELVDFLGEGAARYADVGARLPKGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGLNSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPGVLDPALTRPGRFDRHVTVGLPNAAGRRAILELHCKKVRISERVDLDAIARSTS--GFAGAELASIVNEAAMLAARHSEVQVGQEHLLLAVART 738
            + +SFAD+AG + AK EL E+VDFL +   RY  +GA++PKGVLL GPSGTGKTLLARA+AAEAGV F  CSASDFVEMLVGRGA+RVRDLF +       IIFIDELDALAK RGGLNSNDEREQTLNQLLTEMDGF+     V+V+AATNRP VLDPAL RPGRFDRHV VGLP+AAGR AIL +H K++R+   V L A+A+S    G++GA+LA +VNEAA++A R  +  V + H  LA+ R+
Sbjct:  171 KRISFADVAGIDKAKKELEEVVDFL-KHPERYEKIGAKIPKGVLLCGPSGTGKTLLARAVAAEAGVAFLYCSASDFVEMLVGRGASRVRDLFTQASQHPKCIIFIDELDALAKARGGLNSNDEREQTLNQLLTEMDGFEGHTEGVIVIAATNRPHVLDPALCRPGRFDRHVYVGLPDAAGREAILSVHAKRIRLGTSVVLGALAKSPKLDGYSGAQLACLVNEAALMAVRQGDAVVEKRHFELAIDRS 417
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BLAST of mRNA_H-paniculata_contig2636.7199.1 vs. uniprot
Match: W4FR59_9STRA (AAA domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR59_9STRA)

HSP 1 Score: 296 bits (757), Expect = 2.490e-92
Identity = 164/250 (65.60%), Postives = 192/250 (76.80%), Query Frame = 1 
Query:    1 RHVSFADIAGAEDAKAELAELVDFLGEGAARYADVGARLPKGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGLNSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPGVLDPALTRPGRFDRHVTVGLPNAAGRRAILELHCKKVRISERVDLDAIAR--STSGFAGAELASIVNEAAMLAARHSEVQVGQEHLLLAVARTRA 744
            + +SFADIAG ++AK EL E+VDFL +   RY  +GA++PKGVLL GPSGTGKTLLARA+AAEAGV F  CSASDFVEMLVGRGA+RVRDLF +       IIFIDE+DALAK RGGLNSNDEREQTLNQLLTEMDGF+     VLV+AATNRP VLDPAL RPGRFDRHV VGLP+AAGR AIL +H K++R+   V L A+AR     G +GA LA +VNEAA++A R ++     +H  LAVAR  A
Sbjct:  172 QRISFADIAGIDNAKLELEEIVDFL-KHPTRYDAIGAKMPKGVLLCGPSGTGKTLLARAVAAEAGVAFLFCSASDFVEMLVGRGASRVRDLFTQASQHAKCIIFIDEIDALAKARGGLNSNDEREQTLNQLLTEMDGFEGHTEGVLVIAATNRPHVLDPALLRPGRFDRHVFVGLPDAAGREAILRVHTKRIRLDASVSLAALARHPQLEGASGAALACLVNEAALMAVRTNDTVAKMKHFELAVARAAA 420
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BLAST of mRNA_H-paniculata_contig2636.7199.1 vs. uniprot
Match: A0A7S2RJG8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJG8_9STRA)

HSP 1 Score: 293 bits (751), Expect = 5.360e-91
Identity = 160/255 (62.75%), Postives = 198/255 (77.65%), Query Frame = 1 
Query:    7 VSFADIAGAEDAKAELAELVDFLGEGAARYADVGARLPKGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRG-GLNSNDEREQTLNQLLTEMDGFDSEGRS--VLVVAATNRPGVLDPALTRPGRFDRHVTVGLPNAAGRRAILELHCKKVRISERVDLDAIARSTSGFAGAELASIVNEAAMLAARHSEVQVGQEHLLLAVARTRAYREEYN 762
            V+F D+AG + AKAEL E+VDFL + + R+  +GAR+PKG+LL+GP+GTGKT+LARAMA E G PF   SAS+FVE LVGRGAARVRDLF+R     P+IIFIDE+D+L + RG  LNSN+EREQTLNQ+LTEMDGFDS G S  +LV+AATNRP VLDPAL RPGRFDRHV VGLP+  GR AIL  H +++R+   VDL A+ARST+GF+GA+LA++VNEAA+LA R    + G EH  LAV R  +  E+ N
Sbjct:  195 VTFNDVAGVDAAKAELLEVVDFLRD-SERFRKMGARMPKGLLLAGPAGTGKTMLARAMANEVGAPFLVVSASEFVETLVGRGAARVRDLFKRARDQAPAIIFIDEVDSLGRARGLSLNSNEEREQTLNQILTEMDGFDSSGSSAPILVIAATNRPQVLDPALLRPGRFDRHVYVGLPDVTGREAILASHARRIRMDSTVDLSAVARSTAGFSGADLANVVNEAALLAVRAGASETGIEHFNLAVGRHTSSNEKRN 448
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BLAST of mRNA_H-paniculata_contig2636.7199.1 vs. uniprot
Match: T0QP29_SAPDV (AAA domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QP29_SAPDV)

HSP 1 Score: 292 bits (748), Expect = 5.870e-91
Identity = 165/258 (63.95%), Postives = 192/258 (74.42%), Query Frame = 1 
Query:    1 RHVSFADIAGAEDAKAELAELVDFLGEGAARYADVGARLPKGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGLNSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPGVLDPALTRPGRFDRHVTVGLPNAAGRRAILELHCKKVRISERVDLDAIARSTS--GFAGAELASIVNEAAMLAARHSEVQVGQEHLLLAVARTRAYREEYNVD 768
            + +SFAD+AG + AK EL E+VDFL +   RY  +GA++PKGVLL GPSGTGKTLLARA+AAEAGV F  CSASDFVEMLVGRGA+RVRDLF +       IIFIDELDALAK RGGLNSNDEREQTLNQLLTEMDGF+     V+V+AATNRP VLDPAL RPGRFDRHV VGLP+AAGR AIL +H K++R    V +  IA++    G +GA+LA +VNEAA+LA RH    V   H  LA+ R     E  NVD
Sbjct:  171 QRISFADVAGIDKAKKELEEVVDFL-KRPQRYETIGAKIPKGVLLCGPSGTGKTLLARAVAAEAGVAFLYCSASDFVEMLVGRGASRVRDLFTQASQHPKCIIFIDELDALAKARGGLNSNDEREQTLNQLLTEMDGFEGHTEGVIVIAATNRPHVLDPALCRPGRFDRHVYVGLPDAAGREAILRVHMKRIRTGLTVSVTTIAKNPKLDGSSGAQLACLVNEAALLAVRHGATVVEMRHFDLAINRMS---ETANVD 424
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2636.7199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L264_9PHAE6.950e-13584.09AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LSS7_ECTSI2.050e-11785.41AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z9E9_9STRA9.010e-9864.15P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6G0WHW9_9STRA1.120e-9363.18AAA domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A3R7G257_9STRA9.540e-9362.36AAA domain-containing protein n=2 Tax=Phytophthora... [more]
M4BWX0_HYAAE1.210e-9259.85AAA domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A1V9YPE2_9STRA1.370e-9264.92Cell division protease ftsH n=1 Tax=Achlya hypogyn... [more]
W4FR59_9STRA2.490e-9265.60AAA domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A7S2RJG8_9STRA5.360e-9162.75Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
T0QP29_SAPDV5.870e-9163.95AAA domain-containing protein n=2 Tax=Saprolegnia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2636contigH-paniculata_contig2636:13123..19922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score284.6
Seed ortholog evalue3.6e-74
Seed eggNOG ortholog2880.D8LSS7
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0031967,GO:0031975,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsCOG0465@1,KOG0731@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1432
Cds size627
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.8042147-UTR-H-paniculata_contig2636:13122..137501622929788.8042147-UTR-H-paniculata_contig2636:13122..13750Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2636 13123..13750 -
1691481011.134017-UTR-H-paniculata_contig2636:13122..137501691481011.134017-UTR-H-paniculata_contig2636:13122..13750Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2636 13123..13750 -
1622929788.904867-UTR-H-paniculata_contig2636:19745..199221622929788.904867-UTR-H-paniculata_contig2636:19745..19922Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2636 19746..19922 -
1691481011.183297-UTR-H-paniculata_contig2636:19745..199221691481011.183297-UTR-H-paniculata_contig2636:19745..19922Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2636 19746..19922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.8194344-CDS-H-paniculata_contig2636:13750..138711622929788.8194344-CDS-H-paniculata_contig2636:13750..13871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2636 13751..13871 -
1691481011.1434395-CDS-H-paniculata_contig2636:13750..138711691481011.1434395-CDS-H-paniculata_contig2636:13750..13871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2636 13751..13871 -
1622929788.8357747-CDS-H-paniculata_contig2636:14515..146401622929788.8357747-CDS-H-paniculata_contig2636:14515..14640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2636 14516..14640 -
1691481011.1507986-CDS-H-paniculata_contig2636:14515..146401691481011.1507986-CDS-H-paniculata_contig2636:14515..14640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2636 14516..14640 -
1622929788.8532913-CDS-H-paniculata_contig2636:17053..171881622929788.8532913-CDS-H-paniculata_contig2636:17053..17188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2636 17054..17188 -
1691481011.158554-CDS-H-paniculata_contig2636:17053..171881691481011.158554-CDS-H-paniculata_contig2636:17053..17188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2636 17054..17188 -
1622929788.8689258-CDS-H-paniculata_contig2636:18388..185581622929788.8689258-CDS-H-paniculata_contig2636:18388..18558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2636 18389..18558 -
1691481011.166318-CDS-H-paniculata_contig2636:18388..185581691481011.166318-CDS-H-paniculata_contig2636:18388..18558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2636 18389..18558 -
1622929788.8845603-CDS-H-paniculata_contig2636:19669..197451622929788.8845603-CDS-H-paniculata_contig2636:19669..19745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2636 19670..19745 -
1691481011.174777-CDS-H-paniculata_contig2636:19669..197451691481011.174777-CDS-H-paniculata_contig2636:19669..19745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2636 19670..19745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2636.7199.1prot_H-paniculata_contig2636.7199.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2636 13751..19745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2636.7199.1

>prot_H-paniculata_contig2636.7199.1 ID=prot_H-paniculata_contig2636.7199.1|Name=mRNA_H-paniculata_contig2636.7199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=209bp
MAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELD
ALAKVRGGLNSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPGVLDP
ALTRPGRFDRHVTVGLPNAAGRRAILELHCKKVRISERVDLDAIARSTSG
FAGAELASIVNEAAMLAARHSEVQVGQEHLLLAVARTRAYREEYNVDGSS
PRSFLEMD*
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mRNA from alignment at H-paniculata_contig2636:13123..19922-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2636.7199.1 ID=mRNA_H-paniculata_contig2636.7199.1|Name=mRNA_H-paniculata_contig2636.7199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6800bp|location=Sequence derived from alignment at H-paniculata_contig2636:13123..19922- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCACGTCTCCTTTGCTGACATCGCCGGGGCAGAGGATGCCAAAGCCGA
GCTCGCGGAGCTCGTGGACTTTCTAGGGGAAGGCGCAGCGAGATATGCCG
ACGTGGGGGCGCGGTTGCCGAAGGGCGTGCTGCTGTCGGGCCCCTCTGGT
ACGGGCAAGACGCTGCTGGCCAGGGCGATGGCGGCGGAGGCTGGGGTGCC
ATTTTTTTCGTGCTCCGCCAGCGATTTCGTGGAGATGTTGGTTGGCCGAG
GAGGTATTTTTGCTTCTTTTGTAGCACAGGGGAGTTACCCTTGTGGTCGC
TTGGTTGTTGTTTTGACCTTTTGTTGTAGGAAGGATCTTTTGAAATAGAA
GTGTTTTTTAGGAACATTGGCTGATCTTGAAGTAGGATTCAAAATTATTT
GGGAGAGGGGTAATGGGGTAATGGGATCGCTTACGAAGGCTTTGTTGTTC
TTTTTTGATGTAAGGATTTGGGGTTTTGTGATTCAGGATTTGACCATGTC
ATTCCGTCCTTAACCCCTCCATCCTGTGCGGAGCGGAGATCAGAGATCAT
GATCTGGTTATTTCCAAGGTCATATGCACGAAGAACCACTGTCCAATTTT
CGTTGTGTATCAAGCTTCTCTTACTGGATTGGGAACTGAAGTCTTTCTGC
CATGTAGAGCGTTCAACGGTACTCTTTCCTTTCTTCCCGAAAAACACGAA
GGCTGGAGAATCATGCGTGGTGACTGGAGGATAACTATGTGCACTAGTGG
AGTGTAACTTGGTATATATAGTACGCCCTTATCTCGGTGCTATTGGTCAT
TGGCCACTGGTCATCGGCCATTGGTCATTGTTTATTGATGTCGATAAGTA
AGGGGGGGTTGAAAATGTAAGGTGCATGAGCTGAGAGAATGACCAATCGA
TACGAATATATTGTCGAAATATTGTGGCCATTTTCAACAGTCAGATATGC
ACACAGTACGTGGAACTGTATAAGGTATAGGTGGTTCACGGCCAAATGTT
TACCTCCGTAGGTCGCATAACATATTCAAATACAGACCCTACACTAAGCC
CCCTATATTTTACAAAGAGATCTCACTCGAAAAGGTAGGGCTGATTCCTT
ACATATGGCTACCTGCTGTATACACACACACACACACACACACACACACA
CATATATGTATATATATGTATATATGTGTACGCACTCTTTGGCATTTTCA
TTCCGGAAACACTAAACTATAGAGCATACGTGAAGAAAATATTTGAATCA
CGTAGATGTTGATATTTATGCGTCCTTATTCCCACCCCCGCACGTACGCA
CCTAAACGCTATGTTGGTGAGCTCTCTTTTTCTGCTTGATTTGTTGTTGT
GTTTTGGCGTTCAGCTGCGCGAGTTAGAGACCTCTTTCAGCGGGGCGTGG
CATCACAGCCGTCCATCATTTTTATAGACGAGCTGGACGCGCTGGCGAAA
GTCAGGGGCGGCCTCAACTCCAACGACGAACGGGAGCAGACCTTGAACCA
GCTGCTCACGGAGATGGACGGCTTCGACAGCGAGGTGAGCAGCTGGTGTA
CTTTTTGTTGACATTTAGACGTCACGAGAGTGGTGTACTTTTTTCTGGAT
CTTTGTTGAAAGATGCTGTACGCACTGTTTCGTTTGTCTGCTAAGCAGTA
GAGAACACAGCCGCCCTAGTTATATCCGCCAAGTTTACCTCAGTTATAGA
GCGACCATTGATTTGTGTCCATTACACTCACGTGAACACACACATGTATG
ACAGGTAACACGCACGGAAACGATAGACGTTGCCATGGTTTTTTTTTTTC
TGTACTGCATTGCGGAAATACATGGACTACGCCAGGCTGGACGCTTGGCT
ATTTATGTCGCCTTGCAAGAGCGTACAGCAGCGCGAGAGAGCAGTACCGT
CCCTACGAGTACCACCGCCAGCCGTAGCAAGATCACTGGGTCGATAAAGA
TTCTCCGCAGAAAAAATACATTTAAAAATCATCTTCACTAATATACTGTG
CATGTTCACACGTCGCACAGGTTGTATCACGTCGAGAAAATCGGCATTGA
CAGCTGTGGCTTTTATATTACATTACTGCAACGAACAGGCGAACTGCGCC
AGGCTAGGCGCCCAGCTGTTCCAGTGATTGTCCAATAATGTGCCGCTGTG
CGAGAAGCCAGTGCCGTCACTGCGAACACCCCCCCCCGGGAGTTGGTAGC
CAAGTGGGTGGATCAGTAGAGATTCTCCCCACGAGCCACATCCGTACTTA
TCTCAAGTTTCAACTTGCCCAGACTCGTTCTATTTGAATCATTTTGAGGT
CCCATCACCGTATGTGGGGCAAACACAAACGTAATCATTATTGCTACTTC
TGCTACCAATGACCCGTGGTGCATGGAAACCTTGTTTTGAGAACCGTGAC
GTCCTATCCTCTGCACAGCAAACAAAAAGAGACTGTCAAATGAGGGTCCA
CAAAGTGTGGACATATCGAATGATAAAATCGGAACCCTCTCCAGGCCTGC
TGGGCCCAATGAACAAAGCAATCAAATTGAGTGCTCTTGCGCTCATCTAC
ACTGACTAATTCATTCGGAGACGATATTCGCACGAGCAGGTCATGATGAA
CAACATCATACAGACCTGAGTGTGTGCATATACGAGCTCCCCCGATTGGT
GGGTTCACCCCCTGTTTATTGATGAACATTCAGGGACTTATTCCGATTCA
TCGAGGGGATTATTGCTTTTTCCTCATGTCACAGGGACGGAGCGTGCTGG
TGGTGGCAGCGACAAACAGACCGGGGGTGCTAGATCCTGCGCTTACCCGA
CCCGGGCGGTTCGACAGACACGTGACGGTTGGCCTGCCGAACGCCGCGGG
AAGGCGGGCAATTTTGGAGGTGAAGACCGATCGTTGGGTTGATTGAGTGA
TCGATTGATAGATCTGTGGCCTTGTTATCGTGTTGCCGAATTGAGTTAGT
GGGATGATGAGATGTGTGGCACAAGGAAGACAATGCCATTTATTCGTTGT
TTTTAACATTGTAGACAGTTTTGGGAAAATATCCAGAAACGTTCAGAGCC
GAAAATAAATTCAGAGCCCTACGAAGAAGTCGGTAACGGAGCGTTTTGGC
TACGAAAAAACGGTCAACTTCATAGCTGCTGAAGATACTTTTGCTTTGCC
CCGAATCTGACTGCTATGCGACAGTTCAAAACGCTCATACTAATAGCTCA
ATAGTGTATAAGAACTGGCGCTCACCGATCATCGGTACACCGGTAGACAG
CAGAAATAAGTGCGGAGCAGATGGTATACTACAAGTCAGTCAGGACGTCA
CAACCATGAATCAATTACGGCAAACCCGAACTCACCCAACTAGAAAAACA
GGCAACCACAAGACAACTATTTTCTTCTCCAGGTCGTCTGGCGGCTACGC
CTCGTAGCTTCTGTGGTCGTGCTCCAGGCGATGGGTGCGTCTTGCAACTC
TGTGCTCATTTGTGCTCCGACGATTGTGTTGGTTTGGAATTGGGATGTAA
ATATCTTACACCTAACGGAAATGAACACACAGACGGTACGTGCAGGCAAG
CAGGTATCACAGACTACGCACGATGGACCCTTCGCCCAAATGTCGACACA
GGCATGGCACAAGACTAGCGTCGTAGTCCCAAGGGCGTCGGATGTAGACT
ATCTGTGGTCTCCACGTCCCTTTCCTCTCTTACACCGCATGGGGTGTCTG
CTACTGGCTTACTGCTGTTCCTGGTCGACTGTTACTTCCTTGAGTCGGCA
ACGGGTACTTGCCATATCCCAATTTTGTGTTTCAAGTCGTCGATGTCAGC
TTGTAGTGATGACGAAAATAGGCGACAATGAAACACACAGCGGCTCGCAA
AAAAGGACACTAGTCCCGCGAGACCTTAGCTCTTGGAGTGTACGTCCGTT
TTAAGCTATGAGCATCCTTTGCACCCCTTGGATATTTTTGCTACTACTCG
ACATGGTGCTGTTCCTTCTTGCTGTGATGTGCCGTTGATGTGTTCGACAC
TCCATTGTGCACAGATCTATTGTCTGTACGACTGTACTACGCTGTGTGAC
GCTTCAGTTCGTATTTAGTAAATACTCCCTGTCATCGCAACAGGTCCAAC
GATGTGCTATATAGTCTCGGCTCTAAGCGTTTTTATCGTGAGCGTTTGGG
ATAGTGTGGGTTCGGGCTATGAATTGCTTGGGCTTTAAGATTTGGAAAAA
CCATTTTGTCATATGACAGTGAAAGAGTCTCTCTCAAGAGTGTTGTCATG
CTCCAAGGGTGGCTGGCTTCCCTTATCGCAGGGGATGGCTGTAACATGAT
CGCTGTAGAAGGAGGGTTATCATCGTTGACGGTTACGCATACCATACGTA
AAAAATACTGTAGAACTAAAAAATACAGGGAGTTTTCGGAGATTTTTGTC
AGACGTTTTAACTGCTTTCTGTCTCAAATATAACGTGGGCACGTGAAATA
GATTTGAGAACTACTGTCAAGTACAAGTTATGGAATATCAATTCCTATCA
AGTATAGCGGTTTCTCGCCGACCCCCCCCTCCTTCCCGTGTGCTCTTTTA
ACTTTGCTCGTGACAAAGTTGTACATGTAACTGGCCGCAGAGTGAAACAT
TTCACCGCGTTTTCGGCTGGTGGACGCTAGCTACCAGAGATAGAATTAAA
CCCTGTGCATTCAATTTATCCTCTTCTATTCCCTGATCCCCCCTCGCGCG
CTGTTTTAGTTGAGCATTTTAATTTCAATAAGATGAATTTATTCATTGCC
ATCAACGTTGGGGGCTACGTATCGTCCCCATTCGTCCCAAACTTACTGTA
TATTATCGCGAAAAATAAAGCGGATTGGTCCGGTTGGTGAGGGTCGTCAT
GTTTGGGTGTATAGTAGTTGTGCGAGGTGATCATTGCTATAATAACTGTG
CCAAGACGGGACACTTGCCCATTCTCACCCCCCCTCCCACCTCACATATC
TATCCTCAAACTGGTGGAAGAGTGAATACGCAGCCGTTAATTGAACATGG
ACTGCATAGTCTCACCGGGAGCACAGACAGCGAAGATTGACTTAATATCG
TGGGAAGCTCCAGAGCGGGTTGGCTCGTGAGTAAAGTGAGGGTTCGCAAG
TAAAGGGGCTATTGGTACCAATGCTGACCTCTAGGCCATGTGACATCGAT
GCAAAACGCACACGAGAAATACCCCTTTCCCTGTGTACACAACTGAGACT
CGAGGTCAGCTGCATAGCATCAACATCGGTACGACCCCTCCTCCCCTCCT
CGCCTTCTCCCTTCTCCCCCTGGACCTGTTAGCTTCACTGTAAGAAAGTG
CGCATCAGCGAGAGAGTCGACCTAGATGCGATAGCCCGGTCGACTTCTGG
GTTTGCAGGGGCGGAACTGGCCAGCATCGTCAACGAGGCTGCAATGCTAG
CGGCAAGGTGAAAACCGACTATAGGCTCAAGGTTCAATGATTTTTGTTTC
CTCTTCAAAAATGAAGATGGACGCCACAGGTCGGTCAACGTGCATGTGAT
GACCAGAATTGTCCATTAACCTTGGCAATATTATACTAGGAGTCTTTTTG
TTGCTATGTAGTTTCTGTGCTTGTATCAAACCTGTTCGGTTGCCATGAGG
TTTGCTCTATTTGAGTATATACTTCGGTAATCCACTTTCCTCCTCCCACC
CATCCATATTCCGCAGCAATGGTGATTCTAGGGAATGAAAAATTGTATGA
AAAAGTGATAGCTGGTTTGATGTACTGTAGACAGGATTCGTGAAACCGTT
TTGAACTGGCTATGGTGAAGTAAAACGGAGAGATTGCCCATCAGAAATCG
CTTTTGTAGGGTCCAAGCTCCGTCCTCATGTATGATCAATGCTAATGATA
CCCCCTCAACCTCTCCCACCCACCCCCGCTCGCGCGTGCAGGTTGTAACG
TATCACTGTCCTCTGTACCCTATGCACTTATGTACAGTCTGACTGGCAGT
AGTAGTTTACATCATCTCTCGGTCTCGGCGGTTTTAGTGTTTCGAGATAT
ATGGTTGTGACCTTGCTTGGTTGGACGGAATCGCTTCGTGTCTAATGCCA
GGCATTCAGAGGTGCAAGTGGGACAAGAGCATCTACTGCTGGCGGTCGCG
CGCACGAGAGCCTACCGGGAGGAGTATAACGTTGATGGGTCATCACCGCG
TTCCTTCTTGGAGATGGACTGAGTTTTAAAAATACTATAGGACGAGACTA
CGCCTTCCTATGGCAGGGGGTGTAGGGGGAGGCCAGAAACTCTTTCCTCG
TATACCCTTGAATAAATAGCAAATGATTGCTGTCACGTAAACGTTGAAAC
GGCTGGTCTATGGGCTCTTGCAGGCTTGTTTCGACCTCGTATTCATTCAA
TGGCTCTTCCCGTCTCTTGGAAGAGCATGCGCTGTTCTTTCTCGAATTCC
CTCCATGTCATGTAGGATAGTAGGCCAGCGTATGCACCCTCTCTCTGGAA
ATGCTTTGGGACGGGAACGGGATCAGATGGTAAATATTTCCCAAGGATGA
GAGTGGGGGGTTTGCATTTCTTTTCGTACAATGGCAGTCATCGCCATACA
GTATATAATCGACCTGTTTTATGGCGGGGGACAAGAGGGCGGAGGGGTTC
GATTCGCAAGAGGTGTTGGTTAAAAATGGGATTGCTCAAAGCTAATGTAA
TGGGCTGCAAGGGTTTGAGTGCCACAGATCCGCGGTTGCTGCCACATTCG
TTTGTGTCTCAGCAAATGAGCATCATAAGTAGTGCTTTTCAACACCAAAA
AGTAAGGAAGCGGCAACAGTAAAGAAGCAACATTTTGACTTTGATCGCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2636:13123..19922-

>mRNA_H-paniculata_contig2636.7199.1 ID=mRNA_H-paniculata_contig2636.7199.1|Name=mRNA_H-paniculata_contig2636.7199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at H-paniculata_contig2636:13123..19922- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGCGGAGGCTGGGGTGCCATTTTTTTCGTGCTCCGCCAGCGATTT
CGTGGAGATGTTGGTTGGCCGAGGAGATGGCGGCGGAGGCTGGGGTGCCA
TTTTTTTCGTGCTCCGCCAGCGATTTCGTGGAGATGTTGGTTGGCCGAGG
AGCTGCGCGAGTTAGAGACCTCTTTCAGCGGGGCGTGGCATCACAGCCGT
CCATCATTTTTATAGACGAGCTGGACGCGCTGGCGAAAGTCAGGGGCGGC
CTCAACTCCAACGACGAACGGGAGCAGACCTTGAACCAGCTGCTCACGGA
GATGGACGGCTTCGACAGCGAGCTGCGCGAGTTAGAGACCTCTTTCAGCG
GGGCGTGGCATCACAGCCGTCCATCATTTTTATAGACGAGCTGGACGCGC
TGGCGAAAGTCAGGGGCGGCCTCAACTCCAACGACGAACGGGAGCAGACC
TTGAACCAGCTGCTCACGGAGATGGACGGCTTCGACAGCGAGGGACGGAG
CGTGCTGGTGGTGGCAGCGACAAACAGACCGGGGGTGCTAGATCCTGCGC
TTACCCGACCCGGGCGGTTCGACAGACACGTGACGGTTGGCCTGCCGAAC
GCCGCGGGAAGGCGGGCAATTTTGGAGGGACGGAGCGTGCTGGTGGTGGC
AGCGACAAACAGACCGGGGGTGCTAGATCCTGCGCTTACCCGACCCGGGC
GGTTCGACAGACACGTGACGGTTGGCCTGCCGAACGCCGCGGGAAGGCGG
GCAATTTTGGAGCTTCACTGTAAGAAAGTGCGCATCAGCGAGAGAGTCGA
CCTAGATGCGATAGCCCGGTCGACTTCTGGGTTTGCAGGGGCGGAACTGG
CCAGCATCGTCAACGAGGCTGCAATGCTAGCGGCAAGCTTCACTGTAAGA
AAGTGCGCATCAGCGAGAGAGTCGACCTAGATGCGATAGCCCGGTCGACT
TCTGGGTTTGCAGGGGCGGAACTGGCCAGCATCGTCAACGAGGCTGCAAT
GCTAGCGGCAAGGCATTCAGAGGTGCAAGTGGGACAAGAGCATCTACTGC
TGGCGGTCGCGCGCACGAGAGCCTACCGGGAGGAGTATAACGTTGATGGG
TCATCACCGCGTTCCTTCTTGGAGATGGACTGAGCATTCAGAGGTGCAAG
TGGGACAAGAGCATCTACTGCTGGCGGTCGCGCGCACGAGAGCCTACCGG
GAGGAGTATAACGTTGATGGGTCATCACCGCGTTCCTTCTTGGAGATGGA
CTGA
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