mRNA_H-paniculata_contig26334.7194.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26334.7194.1
Unique NamemRNA_H-paniculata_contig26334.7194.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26334.7194.1 vs. uniprot
Match: D8LC66_ECTSI (WD repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC66_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.410e-34
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 1
Query:   28 LLAAPIWSCEESRDVAAIALAEASIGDYKLKSSPDYEVPEEMQLNVSKKQREMVLLEESLHTMRSRFNRRFLALRNIKREILVTVASGNRRLREIDAE 321
            L A P    ++ RDV AIALA +++GDYKLKSSPDYEVPEEMQLNV KKQREMVLLE+SLH MRSRFN RFLALR IK+EIL TV++ NRRLREIDAE
Sbjct: 1288 LKAKPAEDADDPRDVEAIALANSNMGDYKLKSSPDYEVPEEMQLNVVKKQREMVLLEDSLHAMRSRFNSRFLALRTIKQEILSTVSADNRRLREIDAE 1385          
BLAST of mRNA_H-paniculata_contig26334.7194.1 vs. uniprot
Match: A0A6H5KI67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI67_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.530e-34
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 1
Query:   28 LLAAPIWSCEESRDVAAIALAEASIGDYKLKSSPDYEVPEEMQLNVSKKQREMVLLEESLHTMRSRFNRRFLALRNIKREILVTVASGNRRLREIDAE 321
            L A P    ++ RDV AIALA +++GDYKLKSS DYEVPEEMQLNV KKQREMVLLE+SLHTMRSRFN RFLALR IKREIL TV++ NRRLR+IDAE
Sbjct:   75 LKAKPAEDADDPRDVEAIALANSNMGDYKLKSSTDYEVPEEMQLNVVKKQREMVLLEDSLHTMRSRFNSRFLALRTIKREILSTVSADNRRLRQIDAE 172          
BLAST of mRNA_H-paniculata_contig26334.7194.1 vs. uniprot
Match: A0A7S2C7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C7U9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.160e-22
Identity = 45/83 (54.22%), Postives = 69/83 (83.13%), Query Frame = 1
Query:   55 EESRDVAAIALAEASIGDYKLKSSPDYEVPEEMQLNVSKKQREMVLLEESLHTMRSRFNRRFLALRNIKREILVTVASGNRRL 303
            ++  D+AAIA AE ++GDYKLK +PDYEVPE+  +N  KK+R+MVLLEE++  +++RFN+RFLALR++KR+I +++ S N+R+
Sbjct:   79 DDPADLAAIAYAENNMGDYKLKMAPDYEVPEDQAVNSEKKRRQMVLLEENMLNIKTRFNKRFLALRDLKRQIALSIISSNKRV 161          
BLAST of mRNA_H-paniculata_contig26334.7194.1 vs. uniprot
Match: A0A7S3HTC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTC7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 6.480e-22
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 1
Query:   55 EESRDVAAIALAEASIGDYKLKSSPDYEVPEEMQLNVSKKQREMVLLEESLHTMRSRFNRRFLALRNIKREILVTVASGNRRLREIDAE 321
            ++ RD+ AI LAE +IGDYKLK + DYEVPE+ + N +KK R+M +LEES+ +MR +FN RFLALRN+KR+++  V   N+R+REID E
Sbjct:  153 DDVRDINAITLAEKTIGDYKLKCADDYEVPEDQRNNATKKLRQMAMLEESMLSMRLQFNERFLALRNLKRQMIYAVRRDNKRIREIDVE 241          
BLAST of mRNA_H-paniculata_contig26334.7194.1 vs. uniprot
Match: A0A482T059_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T059_9ARCH)

HSP 1 Score: 99.0 bits (245), Expect = 6.740e-22
Identity = 53/89 (59.55%), Postives = 69/89 (77.53%), Query Frame = 1
Query:   55 EESRDVAAIALAEASIGDYKLKSSPDYEVPEEMQLNVSKKQREMVLLEESLHTMRSRFNRRFLALRNIKREILVTVASGNRRLREIDAE 321
            ++ RD+ AI  AE +IGDYKLK S DYEVPE+ ++NV KK R+M +LEES+ TMR +FN RFLALR +KREI+ +V   N+R+REID E
Sbjct: 1025 DDIRDLDAIRHAEKTIGDYKLKCSDDYEVPEDQRINVVKKIRQMAMLEESMLTMRLQFNDRFLALRQLKREIIFSVRRDNQRIREIDGE 1113          
BLAST of mRNA_H-paniculata_contig26334.7194.1 vs. uniprot
Match: A0A7S0Z0C5_9CRYP (Hypothetical protein (Fragment) n=4 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0Z0C5_9CRYP)

HSP 1 Score: 89.0 bits (219), Expect = 2.270e-20
Identity = 46/89 (51.69%), Postives = 64/89 (71.91%), Query Frame = 1
Query:   55 EESRDVAAIALAEASIGDYKLKSSPDYEVPEEMQLNVSKKQREMVLLEESLHTMRSRFNRRFLALRNIKREILVTVASGNRRLREIDAE 321
            E+  DVAAI  A   +GDYKLK+ PDY VPE +++N  KK+R+MVLLEES++T++  FN RFLALR +K  I   + + N R++EI+ E
Sbjct:   53 EDPTDVAAIEEANTLMGDYKLKTDPDYVVPEHLRINADKKRRQMVLLEESIYTIKMAFNDRFLALRELKSRIRANIRADNLRIQEINQE 141          
BLAST of mRNA_H-paniculata_contig26334.7194.1 vs. uniprot
Match: A0A7S0N172_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N172_9CRYP)

HSP 1 Score: 86.3 bits (212), Expect = 1.580e-19
Identity = 45/89 (50.56%), Postives = 64/89 (71.91%), Query Frame = 1
Query:   55 EESRDVAAIALAEASIGDYKLKSSPDYEVPEEMQLNVSKKQREMVLLEESLHTMRSRFNRRFLALRNIKREILVTVASGNRRLREIDAE 321
            E+  D AAI  AEA +GD+KLK+   + VPE ++++  KK+R+MVLLEES+H +R  FN R LALR++KR IL T+A+   R+R I+ E
Sbjct:   31 EDPSDAAAIRAAEARMGDWKLKTDEGFVVPEHLRIDADKKRRQMVLLEESVHAVRMGFNERLLALRDLKRRILTTIAADKARIRAINRE 119          
BLAST of mRNA_H-paniculata_contig26334.7194.1 vs. uniprot
Match: A0A7S1X257_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X257_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 1.720e-19
Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 1
Query:   55 EESRDVAAIALAEASIGDYKLKSSPDYEVPEEMQLNVSKKQREMVLLEESLHTMRSRFNRRFLALRNIKREILVTVASGNRRLREIDA 318
            E   DVA I  AE ++GD+KLKS P++ VPEE +LN  KK+R+M+LLEE ++ +R  FN RFLALR++K+++   +   N+RLRE+ +
Sbjct:   33 ENPADVALIVEAENNMGDFKLKSDPEFVVPEEERLNTEKKRRQMILLEEGMYNIRMEFNSRFLALRDVKKKVCADIKDKNKRLRELQS 120          
BLAST of mRNA_H-paniculata_contig26334.7194.1 vs. uniprot
Match: A0A7S0DYL1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DYL1_9CRYP)

HSP 1 Score: 89.4 bits (220), Expect = 1.040e-18
Identity = 43/89 (48.31%), Postives = 69/89 (77.53%), Query Frame = 1
Query:   55 EESRDVAAIALAEASIGDYKLKSSPDYEVPEEMQLNVSKKQREMVLLEESLHTMRSRFNRRFLALRNIKREILVTVASGNRRLREIDAE 321
            E+ +DV+AI  A+  +GDYKLK+  DY VPE ++++  KK+R+M+LLEES+H+++  FN R LALR++K++I+  + + N+R+REID E
Sbjct:   83 EDPKDVSAIQHAQKHMGDYKLKTEEDYVVPEHLRIDAEKKRRQMILLEESIHSIKMGFNDRLLALRDLKKKIIGNIQADNQRIREIDEE 171          
BLAST of mRNA_H-paniculata_contig26334.7194.1 vs. uniprot
Match: A0A7S1G790_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G790_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.600e-18
Identity = 45/89 (50.56%), Postives = 67/89 (75.28%), Query Frame = 1
Query:   55 EESRDVAAIALAEASIGDYKLKSSPDYEVPEEMQLNVSKKQREMVLLEESLHTMRSRFNRRFLALRNIKREILVTVASGNRRLREIDAE 321
            E+  DV A+  A  ++GDYKLKS+PDY+VPE  +++  KK+R+MVLLEES+ +++S FN+R LALR++KR I+  V + N RL+ I+ E
Sbjct:   36 EDPADVEAVTHARENMGDYKLKSAPDYKVPEAKRVDNVKKRRQMVLLEESVFSIKSDFNKRLLALRDLKRAIVENVRADNARLKAINEE 124          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26334.7194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC66_ECTSI1.410e-3475.51WD repeat protein n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KI67_9PHAE2.530e-3475.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2C7U9_9STRA5.160e-2254.22Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3HTC7_9STRA6.480e-2256.18Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482T059_9ARCH6.740e-2259.55Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S0Z0C5_9CRYP2.270e-2051.69Hypothetical protein (Fragment) n=4 Tax=Hemiselmis... [more]
A0A7S0N172_9CRYP1.580e-1950.56Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S1X257_9CHLO1.720e-1948.86Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7S0DYL1_9CRYP1.040e-1848.31Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S1G790_9STRA1.600e-1850.56Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26334contigH-paniculata_contig26334:2273..2870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue3.6e-30
Seed eggNOG ortholog2880.D8LC66
Preferred nameCFAP44
Hectar predicted targeting categoryother localisation
GOsGO:0001539,GO:0006928,GO:0008150,GO:0009987,GO:0040011,GO:0048870,GO:0051179,GO:0051674,GO:0060285
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.3391023-CDS-H-paniculata_contig26334:2272..24101622929788.3391023-CDS-H-paniculata_contig26334:2272..2410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26334 2273..2410 +
1691481010.9385357-CDS-H-paniculata_contig26334:2272..24101691481010.9385357-CDS-H-paniculata_contig26334:2272..2410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26334 2273..2410 +
1622929788.3557196-CDS-H-paniculata_contig26334:2687..28701622929788.3557196-CDS-H-paniculata_contig26334:2687..2870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26334 2688..2870 +
1691481010.9591565-CDS-H-paniculata_contig26334:2687..28701691481010.9591565-CDS-H-paniculata_contig26334:2687..2870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26334 2688..2870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26334.7194.1prot_H-paniculata_contig26334.7194.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26334 2273..2870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26334.7194.1

>prot_H-paniculata_contig26334.7194.1 ID=prot_H-paniculata_contig26334.7194.1|Name=mRNA_H-paniculata_contig26334.7194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
TIYKFCYLPLLAAPIWSCEESRDVAAIALAEASIGDYKLKSSPDYEVPEE
MQLNVSKKQREMVLLEESLHTMRSRFNRRFLALRNIKREILVTVASGNRR
LREIDAE
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mRNA from alignment at H-paniculata_contig26334:2273..2870+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26334.7194.1 ID=mRNA_H-paniculata_contig26334.7194.1|Name=mRNA_H-paniculata_contig26334.7194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=598bp|location=Sequence derived from alignment at H-paniculata_contig26334:2273..2870+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAATATATAAGTTTTGCTATTTGCCCTTACTGGCTGCTCCGATTTGGTC TTGCGAGGAATCCAGAGATGTGGCTGCCATCGCGTTGGCCGAGGCAAGTA TTGGGGACTACAAGCTCAAGTCTTCCCCAGACTACGAGGTGGGAGAAACG GATACACGATCTTCTGGGTACGGCAAGCGGCCCCAAACCCTCAACTGTCA TCTGGCCATCGGGGGTCGACTAATCCATGTTAATTACATTCGCAGAGGTT GGTAATGCTAACATTTTACGACATGGGGATACATGTAGATGGAATTCCCT TAATCTGTTCATTTTACTCCGTATACCCACGCAGGAGGTCGATTCCTTGG TCTGCATGCAGTACGCATCATGATTCCTCCCCAAAACACACCTATGGGAA TTGTCCGTGACACAGGTGCCGGAGGAGATGCAGCTGAACGTGAGCAAAAA ACAGCGGGAAATGGTTCTCCTCGAAGAGTCGCTGCACACCATGCGCTCAA GGTTTAACCGTAGATTTTTAGCCCTGAGGAACATTAAGCGCGAGATCCTA GTTACGGTTGCTTCCGGTAACCGCCGTCTCCGGGAGATCGACGCGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig26334:2273..2870+

>mRNA_H-paniculata_contig26334.7194.1 ID=mRNA_H-paniculata_contig26334.7194.1|Name=mRNA_H-paniculata_contig26334.7194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig26334:2273..2870+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAATATATAAGTTTTGCTATTTGCCCTTACTGGCTGCTCCGATTTGGTC
TTGCGAGGAATCCAGAGATGTGGCTGCCATCGCGTTGGCCGAGGCAAGTA
TTGGGGACTACAAGCTCAAGTCTTCCCCAGACTACGAGACAATATATAAG
TTTTGCTATTTGCCCTTACTGGCTGCTCCGATTTGGTCTTGCGAGGAATC
CAGAGATGTGGCTGCCATCGCGTTGGCCGAGGCAAGTATTGGGGACTACA
AGCTCAAGTCTTCCCCAGACTACGAGGTGCCGGAGGAGATGCAGCTGAAC
GTGAGCAAAAAACAGCGGGAAATGGTTCTCCTCGAAGAGTCGCTGCACAC
CATGCGCTCAAGGTTTAACCGTAGATTTTTAGCCCTGAGGAACATTAAGC
GCGAGATCCTAGTTACGGTTGCTTCCGGTAACCGCCGTCTCCGGGAGATC
GACGCGGAGGTGCCGGAGGAGATGCAGCTGAACGTGAGCAAAAAACAGCG
GGAAATGGTTCTCCTCGAAGAGTCGCTGCACACCATGCGCTCAAGGTTTA
ACCGTAGATTTTTAGCCCTGAGGAACATTAAGCGCGAGATCCTAGTTACG
GTTGCTTCCGGTAACCGCCGTCTCCGGGAGATCGACGCGGAG
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