mRNA_H-paniculata_contig26332.7192.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26332.7192.1
Unique NamemRNA_H-paniculata_contig26332.7192.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26332.7192.1 vs. uniprot
Match: A0A6H5L4K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4K4_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.830e-39
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = 1
Query:    1 SGELQESLQFLSAYPECVTHVAILSFTSATGQLFIFFTIKKFGPIIFTIIMTTRQMLSLVISAIVFAHSLGVGCWVGALIVFGTIGYRIRRKMNPSG 291
            +G   ES +F+S YP    HV ILS TSATGQLFIF+TIKKFGPIIFTIIMTTRQM+SLV+SA++F H LG+GCWVGA +VFGTIGYRIRRKM   G
Sbjct:  296 NGGFAESFRFMSTYPAAFFHVVILSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVLSAVMFGHLLGLGCWVGAFVVFGTIGYRIRRKMQSRG 392          
BLAST of mRNA_H-paniculata_contig26332.7192.1 vs. uniprot
Match: A0A6S9KLE1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KLE1_HETAK)

HSP 1 Score: 118 bits (295), Expect = 1.560e-29
Identity = 57/92 (61.96%), Postives = 75/92 (81.52%), Query Frame = 1
Query:    1 SGELQESLQFLSAYPECVTHVAILSFTSATGQLFIFFTIKKFGPIIFTIIMTTRQMLSLVISAIVFAHSLGVGCWVGALIVFGTIGYRIRRK 276
            +GE  ++L F++  PE V+HV +LS TS TGQLFIF+TIKKFGP+IFTIIMTTRQMLS+V+S  +F H+LG+    GA++VF T+GYRIRR+
Sbjct:  307 TGEFFQTLTFMADNPEAVSHVLVLSITSCTGQLFIFYTIKKFGPVIFTIIMTTRQMLSMVLSCFLFGHALGLLAVAGAIVVFATLGYRIRRQ 398          
BLAST of mRNA_H-paniculata_contig26332.7192.1 vs. uniprot
Match: F0YSJ6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YSJ6_AURAN)

HSP 1 Score: 114 bits (284), Expect = 2.950e-29
Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    1 SGELQESLQFLSAYPECVTHVAILSFTSATGQLFIFFTIKKFGPIIFTIIMTTRQMLSLVISAIVFAHSLGVGCWVGALIVFGTIGYRIRRKMNPSGR 294
            +GE+ ESL FL+     + +V  LSFTSATGQLFIF+TIKKFGPI+FTI+MTTRQMLSL +S +VF HSLG G  +G  +VFG + YR +RK +   R
Sbjct:  140 TGEMGESLAFLATNEAALVNVLTLSFTSATGQLFIFYTIKKFGPIVFTIMMTTRQMLSLTVSCLVFGHSLGPGAVLGTGVVFGVLFYRTKRKYDAVSR 237          
BLAST of mRNA_H-paniculata_contig26332.7192.1 vs. uniprot
Match: A0A7S2WFB0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFB0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.430e-28
Identity = 55/93 (59.14%), Postives = 73/93 (78.49%), Query Frame = 1
Query:    1 SGELQESLQFLSAYPECVTHVAILSFTSATGQLFIFFTIKKFGPIIFTIIMTTRQMLSLVISAIVFAHSLGVGCWVGALIVFGTIGYRIRRKM 279
            SGEL    +FLS +P+ + +  I + TSATGQLFIF+TIK+FGP++FTIIMTTRQM+S++IS ++F HSL  G +VGA +VFG + YRIRRK 
Sbjct:  263 SGELMAVTEFLSYHPQALWYNIITAITSATGQLFIFYTIKQFGPVVFTIIMTTRQMISMIISTLLFGHSLSSGSYVGAFLVFGAVFYRIRRKQ 355          
BLAST of mRNA_H-paniculata_contig26332.7192.1 vs. uniprot
Match: A0A836CQP3_9STRA (Solute carrier family 35, member B1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQP3_9STRA)

HSP 1 Score: 113 bits (283), Expect = 5.010e-28
Identity = 59/98 (60.20%), Postives = 72/98 (73.47%), Query Frame = 1
Query:    1 SGELQESLQFLSAYPECVTHVAILSFTSATGQLFIFFTIKKFGPIIFTIIMTTRQMLSLVISAIVFAHSLGVGCWVGALIVFGTIGYRIRRKMNPSGR 294
            SGEL  S+ F+  +P  + H+A LS TSATGQLFIF+TIK FGPIIFTIIMT RQM SLVIS + F H LG+   +G  +VFGT+GYRI+RK +   R
Sbjct:  274 SGELFSSIAFVMDHPVALKHLATLSITSATGQLFIFYTIKNFGPIIFTIIMTCRQMFSLVISTLWFGHVLGLLSLLGTTVVFGTLGYRIKRKYDGRAR 371          
BLAST of mRNA_H-paniculata_contig26332.7192.1 vs. uniprot
Match: A0A8J2SJ07_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJ07_9STRA)

HSP 1 Score: 112 bits (280), Expect = 9.070e-28
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 SGELQESLQFLSAYPECVTHVAILSFTSATGQLFIFFTIKKFGPIIFTIIMTTRQMLSLVISAIVFAHSLGVGCWVGALIVFGTIGYRIRRKMNPS 288
            +GE+  SL FL+A P  + +V  LS TSATGQLFIF+TIKKFGPI+FTI+MTTRQMLSL +S +VF H LG G  +G  +VFG + YR +RK + +
Sbjct:  245 TGEMGLSLAFLAANPAALANVLTLSLTSATGQLFIFYTIKKFGPIVFTIMMTTRQMLSLTVSCVVFGHKLGGGAVLGTCVVFGVLFYRTKRKYDAA 340          
BLAST of mRNA_H-paniculata_contig26332.7192.1 vs. uniprot
Match: A0A7S2V172_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V172_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.770e-27
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    1 SGELQESLQFLSAYPECVTHVAILSFTSATGQLFIFFTIKKFGPIIFTIIMTTRQMLSLVISAIVFAHSLGVGCWVGALIVFGTIGYRIRRKMNPS 288
            +GE  +SL+FL   PE + ++  LS  SATGQLFI++TIKKFGPI+FTIIMTTRQMLS+VIS IV+ H + +    GALIVF TIGYRIRR+ N  
Sbjct:  284 TGEGIKSLRFLGRNPEALVNILTLSVCSATGQLFIYYTIKKFGPIVFTIIMTTRQMLSMVISCIVYDHPMSLPSVFGALIVFTTIGYRIRRQYNAK 379          
BLAST of mRNA_H-paniculata_contig26332.7192.1 vs. uniprot
Match: A0A812Z441_SYMMI (Slc35b2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z441_SYMMI)

HSP 1 Score: 104 bits (259), Expect = 6.730e-27
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = 1
Query:    1 SGELQESLQFLSAYPECVTHVAILSFTSATGQLFIFFTIKKFGPIIFTIIMTTRQMLSLVISAIVFAHSLGVGCWVGALIVFGTIGYRIRRKMNPSGR 294
            SGE+    +FL   P  + +  + + TSATGQ FIF+TIK+FGPI+FT+IMTTRQMLS+V+S++ F H + +  ++GA +VFG + Y +RR+MN  G+
Sbjct:   19 SGEIFTVTEFLLVNPTALLYNIVTAITSATGQFFIFYTIKEFGPIVFTVIMTTRQMLSMVLSSVFFGHKMSIYSYLGATLVFGAVFYSVRRQMNKHGK 116          
BLAST of mRNA_H-paniculata_contig26332.7192.1 vs. uniprot
Match: A0A7S2HMN6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HMN6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.290e-25
Identity = 51/98 (52.04%), Postives = 72/98 (73.47%), Query Frame = 1
Query:    1 SGELQESLQFLSAYPECVTHVAILSFTSATGQLFIFFTIKKFGPIIFTIIMTTRQMLSLVISAIVFAHSLGVGCWVGALIVFGTIGYRIRRKMNPSGR 294
            SGE+  +L+F++ +P+C+ H+ I S TSATGQLFIF+TI KFGP++ TIIM TRQM+S++IS I+F H + +G + GA IVFG I Y   +K   + R
Sbjct:  241 SGEMWIALEFITYHPKCLAHIFINSVTSATGQLFIFYTILKFGPVVLTIIMNTRQMISMIISCIIFQHPVSLGSYCGASIVFGVISYGSYQKYKAAPR 338          
BLAST of mRNA_H-paniculata_contig26332.7192.1 vs. uniprot
Match: A0A7S2MHE4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHE4_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.300e-25
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    4 GELQESLQFLSAYPECVTHVAILSFTSATGQLFIFFTIKKFGPIIFTIIMTTRQMLSLVISAIVFAHSLGVGCWVGALIVFGTIGYRIRRK 276
             ++   +QFL   P  + +  I + TSA+GQ+FIF+TIK FGP++FTIIMTTRQM+S+VIS I+F H L    + GAL+VFG + YRIRRK
Sbjct:   62 NDMPAVIQFLIQNPNSLVYNIITAVTSASGQMFIFYTIKSFGPVVFTIIMTTRQMISMVISTILFGHQLAAASFAGALVVFGAVFYRIRRK 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26332.7192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4K4_9PHAE1.830e-3972.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6S9KLE1_HETAK1.560e-2961.96Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
F0YSJ6_AURAN2.950e-2959.18Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2WFB0_9STRA3.430e-2859.14Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A836CQP3_9STRA5.010e-2860.20Solute carrier family 35, member B1 n=1 Tax=Tribon... [more]
A0A8J2SJ07_9STRA9.070e-2858.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2V172_9STRA1.770e-2761.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A812Z441_SYMMI6.730e-2748.98Slc35b2 protein n=1 Tax=Symbiodinium microadriatic... [more]
A0A7S2HMN6_9STRA1.290e-2552.04Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2MHE4_9STRA6.300e-2553.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26332contigH-paniculata_contig26332:2281..3370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue5.3e-23
Seed eggNOG ortholog44056.XP_009043388.1
KEGG koko:K15276
KEGG TC2.A.7.11.2,2.A.7.11.3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.UDP-galactose transmembrane transporter activity
EggNOG OGsCOG0697@1,KOG1581@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.204817-CDS-H-paniculata_contig26332:2280..23861622929788.204817-CDS-H-paniculata_contig26332:2280..2386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26332 2281..2386 -
1691481010.88622-CDS-H-paniculata_contig26332:2280..23861691481010.88622-CDS-H-paniculata_contig26332:2280..2386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26332 2281..2386 -
1622929788.2209997-CDS-H-paniculata_contig26332:3176..33701622929788.2209997-CDS-H-paniculata_contig26332:3176..3370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26332 3177..3370 -
1691481010.8987877-CDS-H-paniculata_contig26332:3176..33701691481010.8987877-CDS-H-paniculata_contig26332:3176..3370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26332 3177..3370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26332.7192.1prot_H-paniculata_contig26332.7192.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26332 2281..3370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26332.7192.1

>prot_H-paniculata_contig26332.7192.1 ID=prot_H-paniculata_contig26332.7192.1|Name=mRNA_H-paniculata_contig26332.7192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
SGELQESLQFLSAYPECVTHVAILSFTSATGQLFIFFTIKKFGPIIFTII
MTTRQMLSLVISAIVFAHSLGVGCWVGALIVFGTIGYRIRRKMNPSGRG*
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mRNA from alignment at H-paniculata_contig26332:2281..3370-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26332.7192.1 ID=mRNA_H-paniculata_contig26332.7192.1|Name=mRNA_H-paniculata_contig26332.7192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1090bp|location=Sequence derived from alignment at H-paniculata_contig26332:2281..3370- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGGAATTACAGGAATCCCTCCAGTTCTTATCCGCCTACCCAGAATG TGTCACACACGTGGCCATTCTGTCGTTCACCTCGGCAACAGGGCAGCTGT TCATCTTCTTCACGATCAAGAAATTTGGTCCCATCATCTTCACCATCATC ATGACCACCCGGCAGATGCTGTCGCTTGTTATCTCCGCCATCGTGTAAGC TTTCACTTCACATTTTGTTCTCTTATTTTATTTGTCCATTGTTTTGAAGC TGTTACTGTATACAAAATATTCACAATATTTACGGCAGTATGCGCTGGAA AAATTGGCACCGTTCGGTGTAGATTACGGGAGATGTCCCCCCCCTCCCCC CCCCCCCCCACTTCGACTCGATTCGTGAGTTGCGACATTAAAAGATAGAG CAGTACTCGTGTATATACCTGTGACGTTCGGAAGTCACACCTTCATGTAG TGTACTTGGTGCTACTGGGCAGAGGTTACCCAAGATACTACCCGACTCGT ACAGGGGTTATGTTGGCCTTTATCCTCGTCATTGTGCAATAACCGGGCGT AGGTCACGAAAGATAGCGCCCCCTCTCCCCTACAGTGACGCGGGTGTTGG TTCCCCCTCTTAAATTCTGGATTTTGTTGCACAGGTTACGGGTTTCAGTA GTATTGAATTGAGAGTAGGTGCATTTTTCAGGTCTGGATTGTGCAGAATT GAGGCTTCACGTCCAAAACCATGGGCGTAGCCTGTAGGTATTCCATAGTT CTGATCCACTCATCAGGCCCAGCCCCTCCGGCGCCCATGCGTCCACTGTC CGAGGAGAAAAAGCTACGTTGATCCCATCTCTAGGTTAATTTCGCAGGGC CCACTATGTTTTACATGCCTCCATCCACAACTGATGTTATCTCTCAAGTA GCCCATTCAGTAGATGATCTCACGTTCCTCCTCGCGTTCTTCTCCCACAT TTCGGTGTTATGTCACGTACGTCATGAACCGCAGGTTTGCGCACAGTCTG GGAGTGGGCTGCTGGGTTGGTGCCTTGATAGTGTTTGGCACCATTGGCTA CCGCATCCGTAGGAAAATGAACCCCAGTGGTCGAGGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig26332:2281..3370-

>mRNA_H-paniculata_contig26332.7192.1 ID=mRNA_H-paniculata_contig26332.7192.1|Name=mRNA_H-paniculata_contig26332.7192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig26332:2281..3370- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGGAATTACAGGAATCCCTCCAGTTCTTATCCGCCTACCCAGAATG
TGTCACACACGTGGCCATTCTGTCGTTCACCTCGGCAACAGGGCAGCTGT
TCATCTTCTTCACGATCAAGAAATTTGGTCCCATCATCTTCACCATCATC
ATGACCACCCGGCAGATGCTGTCGCTTGTTATCTCCGCCATCGTAGCGGG
GAATTACAGGAATCCCTCCAGTTCTTATCCGCCTACCCAGAATGTGTCAC
ACACGTGGCCATTCTGTCGTTCACCTCGGCAACAGGGCAGCTGTTCATCT
TCTTCACGATCAAGAAATTTGGTCCCATCATCTTCACCATCATCATGACC
ACCCGGCAGATGCTGTCGCTTGTTATCTCCGCCATCGTGTTTGCGCACAG
TCTGGGAGTGGGCTGCTGGGTTGGTGCCTTGATAGTGTTTGGCACCATTG
GCTACCGCATCCGTAGGAAAATGAACCCCAGTGGTCGAGGCTGAGTTTGC
GCACAGTCTGGGAGTGGGCTGCTGGGTTGGTGCCTTGATAGTGTTTGGCA
CCATTGGCTACCGCATCCGTAGGAAAATGAACCCCAGTGGTCGAGGCTGA
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