mRNA_H-paniculata_contig2630.7183.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2630.7183.1
Unique NamemRNA_H-paniculata_contig2630.7183.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2630.7183.1 vs. uniprot
Match: A0A6H5KNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI2_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 3.570e-78
Identity = 135/242 (55.79%), Postives = 170/242 (70.25%), Query Frame = 2 
Query:    5 PAPMSPRSWYACKLKVLELMALDKHGVYIQHPEKSVGADVWETYKAMVSKPFWLNQIQEKVGKIKTDCRYPTVDDFLHDVRHMCANSFVYVRTARNDTLLGFLRKIEVERDK-YLPTSKPLVPKWEICLKLLDKLYKLGDAIYYLSYPLKIYYLFSPQDEPDDYAEKIKNPMDMATVVYKLLGGVYADEGGMVADLRLMVDNCKRYYTDNAELDADTVKIALRNAKLVGETLEMGVRMLMPE 727
            P P+ PR WY  + +V +++ LD   VY   P+ S+G   + +Y AMV  P WL +IQ +V  +K  C+Y T+D+FLHDVR +CANSF++ R   N T+L FLR +E    K  L  SKPLVPKWE CL+LL++LY L   IYYLSYP+KIYYL  PQ EP DYAEK+K PM M+ VV+KLL G Y+DEGGMVADLRLMV+NCKRYYT +  LDADT + AL NA  V + LE GV+ L+PE
Sbjct:  739 PRPIDPREWYCARTQVEKMIRLDYQKVYTNSPKLSIGGASYTSYLAMVETPIWLREIQTRVAPVKPKCKYRTIDEFLHDVRRLCANSFMWTRETSNVTVLSFLRLLETADVKNVLRPSKPLVPKWEKCLQLLNRLYSLTAHIYYLSYPMKIYYLSDPQAEPKDYAEKVKQPMYMSKVVFKLLTGEYSDEGGMVADLRLMVENCKRYYTSSVLLDADTTQAALANAAAVQDALEAGVKALLPE 980
[Close]
BLAST of mRNA_H-paniculata_contig2630.7183.1 vs. uniprot
Match: D7FWI3_ECTSI (Global transcription factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI3_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 3.690e-69
Identity = 129/257 (50.19%), Postives = 162/257 (63.04%), Query Frame = 2 
Query:    5 PAPMSPRSWYACKLKVLELMALDKHGVYIQHPEKSVGADVWETYKAMVSKPFWLNQIQEKVGKIKTDCRYPTVDDFLHDVRHMCANSFVYVRTARNDTLLGFLRKIEVERDK-YLPTSKPLVPKWEICL------------------------KLLDKLYKLGDAIYYLSYPLKIYYLFSPQDEPDDYAEKIKNPMDMATVVYKLLGGVYADEGGMVADLRLMVDNCKRYYTDNAELDADTVKIALRNAKLVGETLE 700
            P P+ PR WY  + +V +++ LD   VY   P+ S+G   + +Y AMV  P WL +IQ +V  +K  C+Y T+D+F+HDVR +CANSF++ R   N T+L FLR +E    K  L  SKPLVPKWE CL                        +LL++LY L   IYYLSYP+KIYYL  PQ EP DYAEK+K PM M+ VV KLL G Y+DEGGMVADLRLMV+NCKRYYT +  LDADT + AL NA  V + LE
Sbjct:  334 PRPIDPREWYCARTQVEKMIRLDYQKVYTNSPKLSIGGASYTSYLAMVETPIWLREIQTRVAPVKPKCKYRTIDEFVHDVRRLCANSFMWTRETSNVTVLSFLRLLETADVKNVLRPSKPLVPKWEKCLQGGSTDNDPHARSRGKTLRDVSTMRLLNRLYSLTAHIYYLSYPMKIYYLSDPQAEPKDYAEKVKQPMYMSKVVVKLLTGEYSDEGGMVADLRLMVENCKRYYTSSVLLDADTTQAALANAAAVQDALE 590
[Close]
BLAST of mRNA_H-paniculata_contig2630.7183.1 vs. uniprot
Match: A0A024UEJ0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UEJ0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.790e-9
Identity = 57/215 (26.51%), Postives = 94/215 (43.72%), Query Frame = 2 
Query:   38 CKLKVLELMALDKHGVYIQHPE-KSVGADVWETYKAMVSKPFWLNQIQEKVGKIKTDCRYPTVDDFLHDVRHMCANSFVY-----VRTARNDTLLGFLRKIEVERDKYLPTSK-----PLVPKWEICLKLLDKLYKLG----DAIYYLSYPLKIYYLFSPQDEPDDYAEKIKNPMDMATVVYKLLGGVYADEGGMVADLRLMVDNCKRYYTDNAE 637
            C   V  +M   +HGV +  P    V   ++  YK  +     L  +Q+K+        YPTV  F +D+R + AN  VY     +     +  +  +  +E + D++  T       P   +W+    + D L        +   +  +P+  Y+  SP   P +Y + IK PMD+ TV  +L  G Y D      DLRL+ DNC +Y+  +A+
Sbjct:  210 CHTIVQRIMKYKEHGVSLAAPFFNPVDLGMYVDYKVKIPHRMHLYGVQQKLST----GAYPTVAAFAYDMRLIFANCLVYNSEVLLSAKIREHAVKLMHLLEQQLDQFDQTDATWTGLPHADRWKCHQVIHDVLAHRSHGGVETAQWFKHPIVTYFA-SPDQAPFNYFKVIKRPMDVGTVTSRLHLGEYRDVASFFGDLRLVFDNCIKYWKTSAD 419
[Close]
BLAST of mRNA_H-paniculata_contig2630.7183.1 vs. uniprot
Match: W2PH79_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PH79_PHYPN)

HSP 1 Score: 63.5 bits (153), Expect = 6.480e-7
Identity = 58/216 (26.85%), Postives = 99/216 (45.83%), Query Frame = 2 
Query:    8 APMSPRSWYACKLKVLELMALDKHGVYIQHPE-KSVGADVWETYKAMVSKPFWLNQIQEKVGKIKTDCRYPTVDDFLHDVRHMCANSFVY------VRTARNDTLLGFLRKIEVERDKYLPTSKPLVPKWEICLKLLDKLYKLG----DAIYYLSYPLKIYYLFSPQDEPDDYAEKIKNPMDMATVVYKLLGGVYADEGGMVADLRLMVDNCKRYY 622
            A MS     AC   +++L+   +  +    P  + V    +  Y+  V     L  +Q+K+        Y T+D F +D+R + +N  VY       +  RN  +   L K+   +   +  S P VP+   C ++++++        +   +  YP++ YY  SP   P +Y + +KNPMD+ TV  KL  G Y      +A L+L+ DNC RY+
Sbjct:  292 AKMSDSQVTACLSLLMKLIKYKEGNISPAAPFLQPVDLTHFPDYRIKVPNRMHLYGVQKKLRSGS----YATIDAFAYDMRLIFSNCLVYNSDVILSKVMRNHAVT--LMKLFESQFGKIGGSWPGVPERWKCHQIINEILAHRTDGQETAQWFKYPIESYY-DSPDQIPYNYYKTVKNPMDIGTVSSKLHLGEYKHVSEFIAGLKLVFDNCIRYW 500
[Close]
BLAST of mRNA_H-paniculata_contig2630.7183.1 vs. uniprot
Match: A0A485LIC1_9STRA (Aste57867_21745 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIC1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.500e-6
Identity = 54/215 (25.12%), Postives = 96/215 (44.65%), Query Frame = 2 
Query:   38 CKLKVLELMALDKHGVYIQHPE-KSVGADVWETYKAMVSKPFWLNQIQEKVGKIKTDCRYPTVDDFLHDVRHMCANSFVY-------VRTARNDTLLGFLRKIEVERDKYLPTSKPLVP---KWEICLKLLDKLYKLGDA----IYYLSYPLKIYYLFSPQDEPDDYAEKIKNPMDMATVVYKLLGGVYADEGGMVADLRLMVDNCKRYYTDNAE 637
            C+  V ++M   + G+ +  P    V   ++  YK  +     L  +Q+K+        YPT+ DF  D+R + AN  VY       V+   +   L  + +  ++    L ++   +P   +W+    + D L     A      +  +P+  Y+  SP   P +Y + +K PMD+ TV  +L  G Y +     +DLRL+ DNC +Y+  N +
Sbjct:  227 CQAIVQKIMKHKELGISLAAPFFNPVDLTMYVDYKVKIPHRMHLFGVQQKLST----GAYPTLSDFARDMRLIFANCLVYNSEVILSVKIREHAVKLMHVFEQLMQHTFELHSTWTGLPDGDRWKCHQVVQDILAHRSSAGAETAQWFKHPIVTYFA-SPDQAPYNYFKIVKRPMDIGTVTSRLHLGEYTNVDAFASDLRLVFDNCLKYWKGNPD 436
[Close]
BLAST of mRNA_H-paniculata_contig2630.7183.1 vs. uniprot
Match: A0A0W8CTR7_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CTR7_PHYNI)

HSP 1 Score: 61.2 bits (147), Expect = 2.590e-6
Identity = 49/173 (28.32%), Postives = 82/173 (47.40%), Query Frame = 2 
Query:  134 YKAMVSKPFWLNQIQEKVGKIKTDCRYPTVDDFLHDVRHMCANSFVY------VRTARNDTLLGFLRKIEVERDKYLPTSKPLVPKWEICLKLLDKLYKLG----DAIYYLSYPLKIYYLFSPQDEPDDYAEKIKNPMDMATVVYKLLGGVYADEGGMVADLRLMVDNCKRYY 622
            Y+  V     L  +Q+K+        Y T+D F +D+R + +N  VY       +  RN  +   L K+   +   +  S P VP+   C ++++++        +   +  YP++ YY  SP   P +Y + + NPMD+ TV  KL  G Y      +A L+L+ DNC RY+
Sbjct:   42 YRIKVPNRMHLYGVQKKLRSGS----YATIDAFAYDMRLIFSNCLVYNSDVILSKVMRNHAVT--LMKLFESQFGKIGGSWPGVPERWKCHQIINEILAHRTDGQETAQWFKYPIESYY-DSPDQIPYNYYKTVNNPMDIGTVSSKLHLGEYKHVSEFIAGLKLVFDNCIRYW 207
[Close]
BLAST of mRNA_H-paniculata_contig2630.7183.1 vs. uniprot
Match: A0A225X5N5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X5N5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.030e-6
Identity = 55/204 (26.96%), Postives = 92/204 (45.10%), Query Frame = 2 
Query:  134 YKAMVSKPFWLNQIQEKVGKIKTDCRYPTVDDFLHDVRHMCANSFVY------VRTARNDTLLGFLRKIEVERDKYLPTSKPLVPKWEICLKLLDKLYKLG----DAIYYLSYPLKIYYLFSPQDEPDDYAEKIKNPMDMATVVYKLLGGVYADEGGMVADLRLMVDNCKRYYTDNAELDADTVKIALRNAKLVGETLEMGVRM 715
            Y+  V     L  +Q+K+        YPT+D F +D+R + +N  VY       +  RN  +   L K+   +   +  S P VP+   C +++ ++        +   +  YP++ YY  SP   P +Y + +  PMD+ TV   L  G Y      VA ++L+ DNC RY+      D    +++  +A L G T E   R+
Sbjct:  316 YRVKVPNRMHLYGVQKKLRSGS----YPTIDAFAYDMRLIFSNCLVYNSDVILSKVMRNHAVT--LMKLFESQFVKIGGSWPGVPERWKCHQIIHEILAHRTDGQETAQWFKYPIESYY-DSPDQIPYNYYKTVTEPMDIGTVSTNLHLGKYKHVSEFVAGMKLVFDNCIRYWKP----DPQGKELSHESANLAGLTPEEAKRL 508
[Close]
BLAST of mRNA_H-paniculata_contig2630.7183.1 vs. uniprot
Match: A0A833VWF8_PHYIN (Bromodomain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833VWF8_PHYIN)

HSP 1 Score: 61.2 bits (147), Expect = 3.410e-6
Identity = 50/173 (28.90%), Postives = 82/173 (47.40%), Query Frame = 2 
Query:  134 YKAMVSKPFWLNQIQEKVGKIKTDCRYPTVDDFLHDVRHMCANSFVY------VRTARNDTLLGFLRKIEVERDKYLPTSKPLVPKWEICLKLLDKLYKLG----DAIYYLSYPLKIYYLFSPQDEPDDYAEKIKNPMDMATVVYKLLGGVYADEGGMVADLRLMVDNCKRYY 622
            Y+  V     L  +Q+K+        Y T+D F +DVR + +N  VY       +  RN  +   L K+   +   +  S P VP+   C +++ ++        +   +  YP++ YY  SP   P +Y+  +K+PMD+ TV  KL  G Y      +A L+L+ DNC RY+
Sbjct:  319 YRIKVPNRMHLYGVQKKLRSGS----YATIDAFAYDVRLIFSNCLVYNSDVILSKVMRNHAVT--LMKLFESQFAKIGGSWPGVPERWKCHQIIHEVLAHRTDGQETAQWFKYPVESYY-DSPDQIPYNYSNIVKSPMDIGTVSSKLHLGEYKHVSEFIAGLKLVFDNCIRYW 484
[Close]
BLAST of mRNA_H-paniculata_contig2630.7183.1 vs. uniprot
Match: A0A329RNE8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RNE8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.410e-6
Identity = 49/173 (28.32%), Postives = 82/173 (47.40%), Query Frame = 2 
Query:  134 YKAMVSKPFWLNQIQEKVGKIKTDCRYPTVDDFLHDVRHMCANSFVY------VRTARNDTLLGFLRKIEVERDKYLPTSKPLVPKWEICLKLLDKLYKLG----DAIYYLSYPLKIYYLFSPQDEPDDYAEKIKNPMDMATVVYKLLGGVYADEGGMVADLRLMVDNCKRYY 622
            Y+  V     L  +Q+K+        Y T+D F +D+R + +N  VY       +  RN  +   L K+   +   +  S P VP+   C +++ ++        +   +  YP++ YY  SP   P +Y + +KNPMD+ TV  KL  G Y      +A ++L+ DNC RY+
Sbjct:  334 YRIKVPNRMHLYGVQKKLRSGS----YATIDAFAYDMRLIFSNCLVYNSDVILSKVMRNHAVT--LMKLFESQFTKVGGSWPGVPERWKCHQIIHEILAHRTDGQETAQWFKYPVESYY-DSPDQIPYNYFKTVKNPMDIGTVSSKLHLGEYKHVSEFIAGMKLVFDNCIRYW 499
[Close]
BLAST of mRNA_H-paniculata_contig2630.7183.1 vs. uniprot
Match: A0A662WST3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WST3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.040e-5
Identity = 45/147 (30.61%), Postives = 71/147 (48.30%), Query Frame = 2 
Query:  212 YPTVDDFLHDVRHMCANSFVY------VRTARNDTLLGFLRKIEVERDKYLPTSKPLVPKWEICLKLLDKLYKLG----DAIYYLSYPLKIYYLFSPQDEPDDYAEKIKNPMDMATVVYKLLGGVYADEGGMVADLRLMVDNCKRYY 622
            Y T+D F +DVR + +N  VY       +  RN  +   L K+       +  S P +P+   C +++ ++        +   +  YP++ YY  SP   P  Y +K+K PMD+ TV  KL  G Y      VA ++L+ DNC RY+
Sbjct:  368 YATIDAFAYDVRLIFSNCLVYNSDVILSKVMRNHAVT--LMKLFEGHFAKIGGSWPGIPQRWKCHQIVHEILAHRTDGQETAQWFKYPVESYY-DSPDQIPYGYYKKVKVPMDIGTVSSKLHLGEYKHASEFVAGMKLIFDNCVRYW 511
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2630.7183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KNI2_9PHAE3.570e-7855.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWI3_ECTSI3.690e-6950.19Global transcription factor group n=1 Tax=Ectocarp... [more]
A0A024UEJ0_9STRA1.790e-926.51Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
W2PH79_PHYPN6.480e-726.85Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A485LIC1_9STRA2.500e-625.12Aste57867_21745 protein n=1 Tax=Aphanomyces stella... [more]
A0A0W8CTR7_PHYNI2.590e-628.32Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A225X5N5_9STRA3.030e-626.96Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A833VWF8_PHYIN3.410e-628.90Bromodomain n=1 Tax=Phytophthora infestans TaxID=4... [more]
A0A329RNE8_9STRA3.410e-628.32Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A662WST3_9STRA1.040e-530.61Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2630contigH-paniculata_contig2630:6744..12112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue6.2e-10
Seed eggNOG ortholog157072.XP_008866064.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG5076@1,KOG1474@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1396
Cds size1383
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929787.1198664-UTR-H-paniculata_contig2630:6743..67561622929787.1198664-UTR-H-paniculata_contig2630:6743..6756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2630 6744..6756 +
1691481010.4936202-UTR-H-paniculata_contig2630:6743..67561691481010.4936202-UTR-H-paniculata_contig2630:6743..6756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2630 6744..6756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929787.1417673-CDS-H-paniculata_contig2630:6756..69531622929787.1417673-CDS-H-paniculata_contig2630:6756..6953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 6757..6953 +
1691481010.5048256-CDS-H-paniculata_contig2630:6756..69531691481010.5048256-CDS-H-paniculata_contig2630:6756..6953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 6757..6953 +
1622929787.157961-CDS-H-paniculata_contig2630:7741..79221622929787.157961-CDS-H-paniculata_contig2630:7741..7922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 7742..7922 +
1691481010.5145397-CDS-H-paniculata_contig2630:7741..79221691481010.5145397-CDS-H-paniculata_contig2630:7741..7922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 7742..7922 +
1622929787.174883-CDS-H-paniculata_contig2630:8351..84621622929787.174883-CDS-H-paniculata_contig2630:8351..8462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 8352..8462 +
1691481010.5248642-CDS-H-paniculata_contig2630:8351..84621691481010.5248642-CDS-H-paniculata_contig2630:8351..8462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 8352..8462 +
1622929787.196477-CDS-H-paniculata_contig2630:9072..91851622929787.196477-CDS-H-paniculata_contig2630:9072..9185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 9073..9185 +
1691481010.5372314-CDS-H-paniculata_contig2630:9072..91851691481010.5372314-CDS-H-paniculata_contig2630:9072..9185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 9073..9185 +
1622929787.2132661-CDS-H-paniculata_contig2630:10430..105181622929787.2132661-CDS-H-paniculata_contig2630:10430..10518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 10431..10518 +
1691481010.5490084-CDS-H-paniculata_contig2630:10430..105181691481010.5490084-CDS-H-paniculata_contig2630:10430..10518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 10431..10518 +
1622929787.2302728-CDS-H-paniculata_contig2630:11419..121121622929787.2302728-CDS-H-paniculata_contig2630:11419..12112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 11420..12112 +
1691481010.559749-CDS-H-paniculata_contig2630:11419..121121691481010.559749-CDS-H-paniculata_contig2630:11419..12112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 11420..12112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2630.7183.1prot_H-paniculata_contig2630.7183.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2630 6757..12112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2630.7183.1

>prot_H-paniculata_contig2630.7183.1 ID=prot_H-paniculata_contig2630.7183.1|Name=mRNA_H-paniculata_contig2630.7183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=461bp
MSPRSWYACKLKVLELMALDKHGVYIQHPEKSVGADVWETYKAMVSKPFW
LNQIQEKVGKIKTDCRYPTVDDFLHDVRHMCANSFVYVRTARNDTLLGFL
RKIEVERDKYLPTSKPLVPKWEICLKLLDKLYKLGDAIYYLSYPLKIYYL
FSPQDEPDDYAEKIKNPMDMATVVYKLLGGVYADEGGMVADLRLMVDNCK
RYYTDNAELDADTVKIALRNAKLVGETLEMGVRMLMPEHRLDRLSSSKPH
KMQPKPLTPTPGLASGPKVLTTKALTPKTSPKAGRKGSASSKNSSRSGSK
SNTLTGAGGGSSSSSGSPPVAAAATGSGSAAAAHNIGAKPNRTKLEGRGI
PSAAMSAGGAGGAASGVGAMAVVAATSSAAAVTTTFSATSTAPAVSAGTN
PRRTNSPPPSFTPDINPGRSSSKGGNGGGGGMEPKKKSLDSSSARKTAAA
ASGSGGGGGGG
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mRNA from alignment at H-paniculata_contig2630:6744..12112+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2630.7183.1 ID=mRNA_H-paniculata_contig2630.7183.1|Name=mRNA_H-paniculata_contig2630.7183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5369bp|location=Sequence derived from alignment at H-paniculata_contig2630:6744..12112+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGCCAGCGCCGATGAGCCCCCGTTCGTGGTACGCGTGTAAACTCAAGG
TGCTGGAGTTGATGGCGCTTGACAAGCATGGTGTGTACATTCAGCACCCA
GAGAAATCGGTGGGAGCGGACGTCTGGGAGACGTACAAGGCTATGGTGTC
GAAGCCATTTTGGCTGAATCAAATCCAGGAGAAAGTCGGGAAGATCAAAA
CTGATTGCAGGTATGTTGGTAACTGTACGCTCCCGCTTTTTCAAGTTTTC
CTTTGATGCTCAACGACGAAATGCAGTAATTGCACCAGGTTGGTAAAGAT
TTTTCCTGCCTGTCTCAGCAATGTGTTTGCCGCTGTAACCGTATATATGT
ACAATCCAGGAGTATGTGTGGGGCACAAAATCGTGATATTGTCAGGCACA
TCGCCGGTCACCGTGTCGCAGTAAGTCCGATCGGACTGATCTGATGTGAT
GGAGACACAAAAGGGCGATGGCTGACAAAGTTGTCTCAACACAGCCAGTG
TTGGCAACGTACGTTTTGTAGTCGTTACAGTGTATGTTCCCCCGGCACTT
TTGTTGTGGGCCTATCTCCTCCGTTCTGTTGCGTGCACTAAATAGCTGCT
CCCACCGATTTTTGAAGAGTGACAAGCCGTGTTTATAGCTGGTACTCTGT
TATATTTTGTCTTGCGTTTCACCTTTTGATGTCGTCGTTTCGGAAGATTT
GGGAATAGTTTTTAAGTCTATACTTACGTAGCTCCTAGGAAGTAATGTTG
ATGCAAGCGCAGCGAGTCCGTGAGCCGTGGGATAAGCATGAACTGCACGG
GCGTAGTTGTTGTCATGCTCCAGTGCTAATGTTACGTTATCCTGCATTTT
GAGTGTATTGAAAAACATTACAGGCGTGTGCATATATATATATATTCATG
CATGTATAGACGTCTATGACATTTTGTCAAGATATGTACACAATAAAGGT
ACTTTAACATATCTTGTGTGGCCCTTTTTTTCGTCTAACACAAAGCAGGT
ACCCAACCGTGGACGATTTCTTGCACGACGTGCGCCATATGTGCGCCAAT
TCGTTTGTCTACGTCCGCACGGCAAGAAACGATACCCTGCTGGGGTTTCT
GAGAAAGATCGAGGTAGAGCGAGACAAATATCTGCCCACGTCGAAGCCCC
TCGTGCCCAAGTGGGAGATCTGTCTCAAGGTGGAGCATCGCGTGGGGCAT
TATGCCATAATTTAGAATTAGACTGTAGCTGGCACGGGAGATGTGACGAA
TGTTCCTGTATTGGCCACGCAGACAGGTCGTAAGTGCGCTTATTATTTCT
ATCTGTCAGCCGTTTGTCGGAATGGCTTTGCGCGTGTGGTTTGTTACGTA
ATTTTGTTAGTTAACCGTCAGTGTTAATGCCATGTAGGTGTCGCTCTTCC
GGTCAGTTTCGCAGCACAACGTGCCCCTTTTTCACTATTATGTCTTGATA
TTCTTGCGATGGACTTGACAGACGGTACCCTCCGCATCCACAGATTTTAT
TTCATTTTTTAATCTTTGCCTCCGTCCCCGTGATCGCCGCCCCGATCTGA
TCCCTTATCACGCCCTCCTCGTCCGCTCTGTGTGTTCTTTTTGTTGTTTT
ACATGCAGCTGCTCGACAAGTTGTACAAGCTGGGAGATGCCATCTACTAC
CTGTCCTACCCTCTGAAAATCTACTATCTCTTCAGCCCCCAGGATGAACC
TGACGATTACGCAGAAAAGGTACACCCTAGTTAAACCAAGTACTGCGTCA
ACCGTGGGTTACTGATGACGGAGTGGGGTACTTTGTCTATCCTCCTCATC
AACAAAGAAGCTACTACAATGATCAACCAGCCAGTTTAGCGTTGTGGGGC
ACCTGTGGAGAATTCGATATGTCTAATGCTTGCCTACTTACTCTGCACTG
CACTTGAACTTGAACTTGACCATTGTATTATCTCGAAAGAGTCCCCCCCC
CCCACCGGACAAATGTGAGTACTTGCAAACGGTTTTCCCAAAAAAGCTGA
AAATATTCGCCTCCTAAGTTTCAAAATGAGGTCGTGTTTTCTCTGTACCC
CGGACCATCCACGACTGCTAATGACATTCGCAAATCGAAATGGACAGGGG
TGGGTACTTTTATTTTATTCTATGTGTCCGCTCATTCTGAAACTCAGGCG
AATACTTTCAATTTTTTTCTGAAAATCATTTTGGAGGTATCCGTGTTTGT
CCGGCGGGTGAAAAGAGTCCACTTTGTTTATCTTCATCCATGATATGATC
CATGATTATTGCTTTCAAATATATATATATATATATTTCAAGTTGACGTT
TGCCCTTTGTTTTTGTCGTTATTTTCCAGATTAAGAATCCCATGGACATG
GCGACCGTCGTGTACAAGCTTCTTGGCGGGGTCTATGCTGACGAGGGCGG
GATGGTGGCTGATCTGAGGCTCATGGTGGACAACTGCAAAAGGTGCGTGC
GCTGTGGCCCGAGATTCGGCATGTGTGTCGTTTGCAATCAGACCGGTTTA
CCGAGACTTCGAGGCACTGGGCAACTGGACGAGAGTCTACGGAAAAGGAA
GTGTAGGTGGTGCTGTATGGCGTCCTTTGAAACGATAGCTTTTTTTTTTT
TTTTTGCTTTTTTCGGTCTTTGATGTGCGTTTCATGTATGGACAATTGCT
TGTTGTTCCTTCCAGGAAAATGCTGCAGTGTATCGGTTTTTATCAGCCTT
ATATTTCGTCAATCCTTCACACCTCAGACAATGGTTGTCCCTATTTTTGG
ATTGTAAATATGATGGTGTTGATGAGAATATAGACTTGGCGCTTTCCAAA
ATCTACTCCAATCGATACTAGGAAAAGTAAAGTGCATACCAGTATGTATC
CTCTAAAATACTGGTGTGACTCGGTCGTCACAAATCGTACAACTGTGTGC
GATTTGCAGACTGCGGACTACGTGACTCTTTACTTGGGGTGTGTTAATTC
GAGATACCACCGTGTGTGGCCTTGGCGTGTATTTCTTTCGCTCTGTGTGT
CGATTTTTGCTCTGCAGGGCGTTTACTGTTTTGGTTTTCGTGTTTTGTAC
CTTTTTTGCGATTTTCCCCTGTTTTTTAGGGATCTACTCGTTGTTATTGC
TCATTGCTCATTGGTTAGGGTATACTCTTGCACTTTCACCGGCTCGCCGT
ATACCATGTACCCACGAGTCTGAGCAACCGGGCTAATATGAGTGAATATT
AATTATTATAATTCTGCCAGTTTTATCCTGTATCTAAAATTAGCATGTAA
CTACACACAGTCATTTAGGAGCTACGTCGAAATACTGCGTATTCACCAGT
ATCAACATTTAGTACATCTCCAGCACCTACTGGCAGAATACTAGCATGAC
TCGGTGAATTTATCGCCAGTATAACTCTTGTAAACACCGAATTTATGTGT
GTGTATCTGTAGTACTTGCTGGCTAAAAACCCTGGGGTGACTGGATATCA
TCAGTATCAACTCCGAAAATAAGGAGAAATATATATTTACTGGATATTTT
ATACCCCAAAACCATTCATGTATTCGGAAATTCTGAGTACGTACGTACAA
GTCCAGCAGTACCAGGTTTTACTGCCAATGTACTGGCTCTGGTACTCTGC
TGTACTGTAAGTACTGTCTTGACCTTTGAAGTGTCGCCGCGGCGTCTCAT
ACGTCGCCTCGCGCGTGTTGGATTTGTTTCCGTGCAGATACTACACCGAC
AACGCGGAGTTGGACGCGGATACAGTGAAAATTGCGCTTCGTAACGCCAA
GTTAGTTGGGGAAACTCTGGAGATGGTGAGTGTATTTTTTTGGAGTGCAA
CGTATTTTTCAGTAGTCAAATTAAACTGAGTAATCAACAACTAGGTTAAA
TACTAACTAGCAATTAAAAAAATTTCAAGTCACTTTTATTTATTATTATT
ATTTTTCGCCCGTAAGCGTACCATTGTGGAGAGCACGTTTCTCATGTTCC
TGAGATTCCTGAACCTTGGCCCTATTCACAATATCTGGAGGAGGTTCCGC
CCATTTTCGGACCAGCTCTCTAGCTGGCTTGACCCCTGACCCTCCCCTGC
ATGTCCGCCCTCCCGAGGACGCGTCATCAAAGTTTAAACACCATGCGCAT
AAGTACTCCCCATCCCCGCGAGCGCACATCCCCCTCCTCCCGGGATACCT
ACGGCCCATGTTACGATCGGCGTAGCAATATGAGAGTAACGGTCGGCAGC
TGCTGCCGCACTTATCGTGGCCGAGATATCTGCTGTTATTTATACAACCT
TTCGTTTAGAGGTAGGGGGTTCCTTTGGAGTTGCCATAATATCTGCAAGG
TGTACTGGTAGATGAATCTTTATTTTCTCTCATAAACTCGCGAACATTTC
CTGTGGGAAGTTGAAGCCTCTGCGCGCGGATCTGTTAAGCAATCGGACTC
GAGTGTTGGATTACAAAAAAATAAAGGGCATATAGTGCCGTCTTTGCCGG
GGAGAACACTCGGCAGATTTATCAGTGCGTCGTGATTTTTATTGCTGTCT
TGATCGCTTTGTGCTGCCGTTGTAGGGATATCGAGAATTTTGTAGCACAA
ACCAGAAAATCAACAAGCTTCCTTTTTTATTTGATCAAATCTCCCCGAGA
AAAATCTCTTGTCCAATAACCCAAATTACGCTCGTCTCCGCGCGTATTCC
ACGCTTCGATCGCTTGCTTCTCCCAGGGAGTAAGGATGCTTATGCCGGAG
CACCGACTGGACAGGCTCTCTTCCTCGAAGCCGCACAAAATGCAGCCTAA
GCCTCTCACGCCCACGCCTGGACTCGCATCCGGGCCGAAAGTGCTCACCA
CGAAGGCGCTGACACCTAAGACGTCGCCGAAAGCCGGCCGCAAAGGGAGC
GCATCGTCCAAAAACTCGTCACGTTCGGGTAGCAAGTCCAACACTCTCAC
GGGAGCCGGCGGGGGCTCAAGCTCAAGCTCGGGCTCACCCCCAGTCGCTG
CTGCCGCCACGGGTAGCGGGTCCGCTGCCGCCGCTCACAACATTGGTGCA
AAGCCTAACAGGACGAAGCTGGAAGGACGAGGCATACCAAGTGCAGCGAT
GAGTGCGGGTGGAGCGGGAGGCGCCGCCTCTGGTGTGGGTGCGATGGCAG
TAGTAGCAGCAACGTCGTCGGCAGCGGCAGTGACGACGACATTTTCGGCG
ACCAGCACTGCTCCTGCAGTTTCCGCGGGGACAAACCCGCGTCGCACAAA
TTCCCCTCCTCCGTCGTTCACGCCCGACATCAACCCCGGTAGGTCATCCT
CCAAAGGGGGTAATGGCGGTGGCGGTGGAATGGAACCGAAGAAGAAGTCA
CTGGATTCTTCCTCTGCGAGGAAGACGGCGGCAGCAGCTAGCGGCAGCGG
TGGCGGCGGTGGTGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2630:6744..12112+

>mRNA_H-paniculata_contig2630.7183.1 ID=mRNA_H-paniculata_contig2630.7183.1|Name=mRNA_H-paniculata_contig2630.7183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2766bp|location=Sequence derived from alignment at H-paniculata_contig2630:6744..12112+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCCCCCGTTCGTGGTACGCGTGTAAACTCAAGGTGCTGGAGTTGAT
GGCGCTTGACAAGCATGGTGTGTACATTCAGCACCCAGAGAAATCGGTGG
GAGCGGACGTCTGGGAGACGTACAAGGCTATGGTGTCGAAGCCATTTTGG
CTGAATCAAATCCAGGAGAAAGTCGGGAAGATCAAAACTGATTGCAGATG
AGCCCCCGTTCGTGGTACGCGTGTAAACTCAAGGTGCTGGAGTTGATGGC
GCTTGACAAGCATGGTGTGTACATTCAGCACCCAGAGAAATCGGTGGGAG
CGGACGTCTGGGAGACGTACAAGGCTATGGTGTCGAAGCCATTTTGGCTG
AATCAAATCCAGGAGAAAGTCGGGAAGATCAAAACTGATTGCAGGTACCC
AACCGTGGACGATTTCTTGCACGACGTGCGCCATATGTGCGCCAATTCGT
TTGTCTACGTCCGCACGGCAAGAAACGATACCCTGCTGGGGTTTCTGAGA
AAGATCGAGGTAGAGCGAGACAAATATCTGCCCACGTCGAAGCCCCTCGT
GCCCAAGTGGGAGATCTGTCTCAAGGTACCCAACCGTGGACGATTTCTTG
CACGACGTGCGCCATATGTGCGCCAATTCGTTTGTCTACGTCCGCACGGC
AAGAAACGATACCCTGCTGGGGTTTCTGAGAAAGATCGAGGTAGAGCGAG
ACAAATATCTGCCCACGTCGAAGCCCCTCGTGCCCAAGTGGGAGATCTGT
CTCAAGCTGCTCGACAAGTTGTACAAGCTGGGAGATGCCATCTACTACCT
GTCCTACCCTCTGAAAATCTACTATCTCTTCAGCCCCCAGGATGAACCTG
ACGATTACGCAGAAAAGCTGCTCGACAAGTTGTACAAGCTGGGAGATGCC
ATCTACTACCTGTCCTACCCTCTGAAAATCTACTATCTCTTCAGCCCCCA
GGATGAACCTGACGATTACGCAGAAAAGATTAAGAATCCCATGGACATGG
CGACCGTCGTGTACAAGCTTCTTGGCGGGGTCTATGCTGACGAGGGCGGG
ATGGTGGCTGATCTGAGGCTCATGGTGGACAACTGCAAAAGATTAAGAAT
CCCATGGACATGGCGACCGTCGTGTACAAGCTTCTTGGCGGGGTCTATGC
TGACGAGGGCGGGATGGTGGCTGATCTGAGGCTCATGGTGGACAACTGCA
AAAGATACTACACCGACAACGCGGAGTTGGACGCGGATACAGTGAAAATT
GCGCTTCGTAACGCCAAGTTAGTTGGGGAAACTCTGGAGATGATACTACA
CCGACAACGCGGAGTTGGACGCGGATACAGTGAAAATTGCGCTTCGTAAC
GCCAAGTTAGTTGGGGAAACTCTGGAGATGGGAGTAAGGATGCTTATGCC
GGAGCACCGACTGGACAGGCTCTCTTCCTCGAAGCCGCACAAAATGCAGC
CTAAGCCTCTCACGCCCACGCCTGGACTCGCATCCGGGCCGAAAGTGCTC
ACCACGAAGGCGCTGACACCTAAGACGTCGCCGAAAGCCGGCCGCAAAGG
GAGCGCATCGTCCAAAAACTCGTCACGTTCGGGTAGCAAGTCCAACACTC
TCACGGGAGCCGGCGGGGGCTCAAGCTCAAGCTCGGGCTCACCCCCAGTC
GCTGCTGCCGCCACGGGTAGCGGGTCCGCTGCCGCCGCTCACAACATTGG
TGCAAAGCCTAACAGGACGAAGCTGGAAGGACGAGGCATACCAAGTGCAG
CGATGAGTGCGGGTGGAGCGGGAGGCGCCGCCTCTGGTGTGGGTGCGATG
GCAGTAGTAGCAGCAACGTCGTCGGCAGCGGCAGTGACGACGACATTTTC
GGCGACCAGCACTGCTCCTGCAGTTTCCGCGGGGACAAACCCGCGTCGCA
CAAATTCCCCTCCTCCGTCGTTCACGCCCGACATCAACCCCGGTAGGTCA
TCCTCCAAAGGGGGTAATGGCGGTGGCGGTGGAATGGAACCGAAGAAGAA
GTCACTGGATTCTTCCTCTGCGAGGAAGACGGCGGCAGCAGCTAGCGGCA
GCGGTGGCGGCGGTGGTGGGGGGGGAGTAAGGATGCTTATGCCGGAGCAC
CGACTGGACAGGCTCTCTTCCTCGAAGCCGCACAAAATGCAGCCTAAGCC
TCTCACGCCCACGCCTGGACTCGCATCCGGGCCGAAAGTGCTCACCACGA
AGGCGCTGACACCTAAGACGTCGCCGAAAGCCGGCCGCAAAGGGAGCGCA
TCGTCCAAAAACTCGTCACGTTCGGGTAGCAAGTCCAACACTCTCACGGG
AGCCGGCGGGGGCTCAAGCTCAAGCTCGGGCTCACCCCCAGTCGCTGCTG
CCGCCACGGGTAGCGGGTCCGCTGCCGCCGCTCACAACATTGGTGCAAAG
CCTAACAGGACGAAGCTGGAAGGACGAGGCATACCAAGTGCAGCGATGAG
TGCGGGTGGAGCGGGAGGCGCCGCCTCTGGTGTGGGTGCGATGGCAGTAG
TAGCAGCAACGTCGTCGGCAGCGGCAGTGACGACGACATTTTCGGCGACC
AGCACTGCTCCTGCAGTTTCCGCGGGGACAAACCCGCGTCGCACAAATTC
CCCTCCTCCGTCGTTCACGCCCGACATCAACCCCGGTAGGTCATCCTCCA
AAGGGGGTAATGGCGGTGGCGGTGGAATGGAACCGAAGAAGAAGTCACTG
GATTCTTCCTCTGCGAGGAAGACGGCGGCAGCAGCTAGCGGCAGCGGTGG
CGGCGGTGGTGGGGGG
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