mRNA_H-paniculata_contig2630.7182.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2630.7182.1
Unique NamemRNA_H-paniculata_contig2630.7182.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2630.7182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2630contigH-paniculata_contig2630:4507..6513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2007
Cds size2007
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929787.037008-CDS-H-paniculata_contig2630:4506..65131622929787.037008-CDS-H-paniculata_contig2630:4506..6513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 4507..6513 +
1691481010.4818017-CDS-H-paniculata_contig2630:4506..65131691481010.4818017-CDS-H-paniculata_contig2630:4506..6513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 4507..6513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2630.7182.1prot_H-paniculata_contig2630.7182.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2630 4507..6513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2630.7182.1

>prot_H-paniculata_contig2630.7182.1 ID=prot_H-paniculata_contig2630.7182.1|Name=mRNA_H-paniculata_contig2630.7182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=669bp
RGSGGGGDRESVGRRSRDKESDRGRSRDRGQSRDRDRSHDGGGTRERGGG
NKRRRDSGDRGRDSRERRGSPDSDDSYRRGSIPRRSESRPSSDSDDDSDD
SQSGSESSSVDHGGGHSHDSRDHRRSSGGSKSDRPGDAGSRSSGGRPPKA
PPAMKDTRPGPKKRASSADDDRDSRNRSPSTSKTRVSGSKEKQSSSSKRG
MGGRGSSAGSRGRSSSVSERFDRSGKAPASPPRDHSASPVVEVTPPRKSS
PRPSSASSGARTGSDESGTHIMKSKRSGKCREGSGSGADRARRQGAEIDD
EGLASPAGRRNDSEAEEEEEEEESDSPEKIRRADIGANPWARELSNGVGG
LGSGGPAVVSQPHHPSGSPSQDAKAPGIWRRRRSGMPSARGSRDSNAMVD
EDEELAGEQLARHVTGSPPQLRGGSDDDDNGDNGDDDDDDDDDDDRVLRK
PISRSPDAAGASADDGGVESDDEEGVAIELDSGVSNMDEDEHSAPGADLI
PLAAPPTITAPPAPPAPDVKPPPPKVEPPRPVVSSAAIGAGPSKSNGKKR
PRPSSRGAYPAVVPPKAPFAPSSILGVPALALASAAIAAAPAPAPNGKRS
PAAGKAGAGKDRDRTPTGSKKNRGSGSAAGLKRDGGGASSPPQARRTQRA
AAVVAAGKIKSTSEGGGSA
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mRNA from alignment at H-paniculata_contig2630:4507..6513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2630.7182.1 ID=mRNA_H-paniculata_contig2630.7182.1|Name=mRNA_H-paniculata_contig2630.7182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2007bp|location=Sequence derived from alignment at H-paniculata_contig2630:4507..6513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGGTAGTGGTGGTGGTGGTGACCGGGAGTCAGTTGGCCGTCGGAGTAG
GGATAAGGAGTCCGACAGAGGGCGTTCTCGCGACCGTGGACAATCCCGCG
ATCGGGACAGGTCTCATGACGGTGGTGGGACGAGAGAGCGCGGTGGAGGT
AACAAGCGGCGGCGTGACAGCGGAGACCGTGGGAGGGATAGCAGGGAACG
GCGAGGTAGCCCCGACTCTGACGATAGCTATCGCAGGGGAAGCATCCCAC
GCAGGAGTGAAAGTCGACCGTCCAGTGACAGCGATGATGACAGCGACGAC
AGTCAGTCTGGGAGCGAGAGCAGCAGCGTTGACCATGGAGGGGGGCATAG
CCATGACAGCAGAGATCACCGGAGAAGCTCCGGCGGAAGTAAAAGCGACA
GACCTGGGGATGCCGGCAGCCGCTCGTCTGGGGGCAGGCCTCCGAAAGCG
CCGCCGGCGATGAAGGACACGAGGCCTGGCCCCAAAAAGCGCGCGAGCAG
TGCCGACGACGACCGTGACAGCCGTAATCGGTCGCCGTCGACTTCGAAGA
CCAGAGTTAGCGGCAGTAAGGAGAAGCAGTCTTCGAGCAGTAAACGAGGG
ATGGGTGGTAGGGGTTCGAGCGCCGGCAGCAGGGGCAGGAGCAGTTCCGT
CTCCGAGCGCTTCGACAGATCTGGCAAGGCTCCCGCATCGCCGCCGAGAG
ATCACAGTGCTTCGCCTGTTGTGGAGGTAACCCCTCCGCGCAAGTCTTCC
CCCCGCCCGTCTTCCGCGTCCTCGGGAGCGCGGACGGGCTCCGACGAATC
CGGCACCCACATCATGAAGTCGAAACGCTCAGGAAAATGCCGCGAAGGTA
GCGGGTCTGGCGCGGACAGGGCACGGCGACAAGGCGCGGAAATAGACGAC
GAGGGACTCGCCAGTCCCGCGGGGAGACGAAACGATTCAGAGGCTGAGGA
GGAGGAGGAGGAGGAGGAGAGCGACTCCCCGGAAAAGATTAGACGCGCTG
ATATCGGCGCAAATCCATGGGCAAGAGAGCTGAGCAACGGTGTTGGTGGC
CTCGGCAGCGGCGGGCCTGCGGTCGTTTCTCAACCTCACCACCCTAGTGG
AAGCCCATCGCAGGACGCTAAGGCACCCGGGATATGGCGTAGGAGGAGGT
CGGGCATGCCCAGCGCACGAGGATCCCGCGACTCAAACGCGATGGTGGAC
GAGGACGAGGAGCTTGCCGGCGAGCAGCTGGCGCGTCATGTCACGGGGAG
TCCACCACAGCTTAGGGGGGGCAGTGACGACGATGACAACGGTGATAATG
GCGATGATGATGATGACGACGACGACGACGACGACCGGGTACTCCGAAAG
CCTATTTCCCGCTCTCCAGACGCAGCAGGAGCGAGCGCAGACGATGGGGG
AGTAGAGAGCGACGACGAGGAAGGAGTGGCCATAGAGCTCGACTCAGGAG
TGTCCAACATGGATGAAGATGAACACTCAGCCCCCGGAGCGGACTTGATA
CCGCTCGCAGCGCCTCCGACAATCACGGCGCCCCCGGCGCCCCCAGCGCC
CGATGTTAAACCCCCGCCTCCGAAGGTGGAACCGCCGCGCCCGGTGGTGT
CCTCTGCCGCCATTGGCGCTGGCCCGTCCAAGAGCAACGGTAAGAAACGC
CCCCGACCGTCGAGCCGGGGCGCTTATCCGGCTGTAGTGCCGCCGAAGGC
ACCTTTTGCCCCATCGTCTATCCTCGGCGTACCGGCACTGGCGCTGGCAT
CGGCCGCGATCGCGGCAGCACCGGCTCCGGCGCCCAACGGTAAGCGTTCG
CCAGCCGCCGGGAAGGCTGGAGCAGGGAAAGACCGGGATCGGACGCCGAC
GGGAAGCAAGAAGAACCGAGGAAGCGGGAGCGCTGCTGGACTGAAGCGAG
ACGGCGGCGGCGCGTCGTCGCCTCCCCAAGCGCGACGGACCCAGCGCGCT
GCGGCGGTTGTTGCGGCGGGCAAGATCAAGAGCACTAGCGAAGGGGGCGG
AAGCGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2630:4507..6513+

>mRNA_H-paniculata_contig2630.7182.1 ID=mRNA_H-paniculata_contig2630.7182.1|Name=mRNA_H-paniculata_contig2630.7182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4014bp|location=Sequence derived from alignment at H-paniculata_contig2630:4507..6513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGGTAGTGGTGGTGGTGGTGACCGGGAGTCAGTTGGCCGTCGGAGTAG
GGATAAGGAGTCCGACAGAGGGCGTTCTCGCGACCGTGGACAATCCCGCG
ATCGGGACAGGTCTCATGACGGTGGTGGGACGAGAGAGCGCGGTGGAGGT
AACAAGCGGCGGCGTGACAGCGGAGACCGTGGGAGGGATAGCAGGGAACG
GCGAGGTAGCCCCGACTCTGACGATAGCTATCGCAGGGGAAGCATCCCAC
GCAGGAGTGAAAGTCGACCGTCCAGTGACAGCGATGATGACAGCGACGAC
AGTCAGTCTGGGAGCGAGAGCAGCAGCGTTGACCATGGAGGGGGGCATAG
CCATGACAGCAGAGATCACCGGAGAAGCTCCGGCGGAAGTAAAAGCGACA
GACCTGGGGATGCCGGCAGCCGCTCGTCTGGGGGCAGGCCTCCGAAAGCG
CCGCCGGCGATGAAGGACACGAGGCCTGGCCCCAAAAAGCGCGCGAGCAG
TGCCGACGACGACCGTGACAGCCGTAATCGGTCGCCGTCGACTTCGAAGA
CCAGAGTTAGCGGCAGTAAGGAGAAGCAGTCTTCGAGCAGTAAACGAGGG
ATGGGTGGTAGGGGTTCGAGCGCCGGCAGCAGGGGCAGGAGCAGTTCCGT
CTCCGAGCGCTTCGACAGATCTGGCAAGGCTCCCGCATCGCCGCCGAGAG
ATCACAGTGCTTCGCCTGTTGTGGAGGTAACCCCTCCGCGCAAGTCTTCC
CCCCGCCCGTCTTCCGCGTCCTCGGGAGCGCGGACGGGCTCCGACGAATC
CGGCACCCACATCATGAAGTCGAAACGCTCAGGAAAATGCCGCGAAGGTA
GCGGGTCTGGCGCGGACAGGGCACGGCGACAAGGCGCGGAAATAGACGAC
GAGGGACTCGCCAGTCCCGCGGGGAGACGAAACGATTCAGAGGCTGAGGA
GGAGGAGGAGGAGGAGGAGAGCGACTCCCCGGAAAAGATTAGACGCGCTG
ATATCGGCGCAAATCCATGGGCAAGAGAGCTGAGCAACGGTGTTGGTGGC
CTCGGCAGCGGCGGGCCTGCGGTCGTTTCTCAACCTCACCACCCTAGTGG
AAGCCCATCGCAGGACGCTAAGGCACCCGGGATATGGCGTAGGAGGAGGT
CGGGCATGCCCAGCGCACGAGGATCCCGCGACTCAAACGCGATGGTGGAC
GAGGACGAGGAGCTTGCCGGCGAGCAGCTGGCGCGTCATGTCACGGGGAG
TCCACCACAGCTTAGGGGGGGCAGTGACGACGATGACAACGGTGATAATG
GCGATGATGATGATGACGACGACGACGACGACGACCGGGTACTCCGAAAG
CCTATTTCCCGCTCTCCAGACGCAGCAGGAGCGAGCGCAGACGATGGGGG
AGTAGAGAGCGACGACGAGGAAGGAGTGGCCATAGAGCTCGACTCAGGAG
TGTCCAACATGGATGAAGATGAACACTCAGCCCCCGGAGCGGACTTGATA
CCGCTCGCAGCGCCTCCGACAATCACGGCGCCCCCGGCGCCCCCAGCGCC
CGATGTTAAACCCCCGCCTCCGAAGGTGGAACCGCCGCGCCCGGTGGTGT
CCTCTGCCGCCATTGGCGCTGGCCCGTCCAAGAGCAACGGTAAGAAACGC
CCCCGACCGTCGAGCCGGGGCGCTTATCCGGCTGTAGTGCCGCCGAAGGC
ACCTTTTGCCCCATCGTCTATCCTCGGCGTACCGGCACTGGCGCTGGCAT
CGGCCGCGATCGCGGCAGCACCGGCTCCGGCGCCCAACGGTAAGCGTTCG
CCAGCCGCCGGGAAGGCTGGAGCAGGGAAAGACCGGGATCGGACGCCGAC
GGGAAGCAAGAAGAACCGAGGAAGCGGGAGCGCTGCTGGACTGAAGCGAG
ACGGCGGCGGCGCGTCGTCGCCTCCCCAAGCGCGACGGACCCAGCGCGCT
GCGGCGGTTGTTGCGGCGGGCAAGATCAAGAGCACTAGCGAAGGGGGCGG
AAGCGCGCGGGGTAGTGGTGGTGGTGGTGACCGGGAGTCAGTTGGCCGTC
GGAGTAGGGATAAGGAGTCCGACAGAGGGCGTTCTCGCGACCGTGGACAA
TCCCGCGATCGGGACAGGTCTCATGACGGTGGTGGGACGAGAGAGCGCGG
TGGAGGTAACAAGCGGCGGCGTGACAGCGGAGACCGTGGGAGGGATAGCA
GGGAACGGCGAGGTAGCCCCGACTCTGACGATAGCTATCGCAGGGGAAGC
ATCCCACGCAGGAGTGAAAGTCGACCGTCCAGTGACAGCGATGATGACAG
CGACGACAGTCAGTCTGGGAGCGAGAGCAGCAGCGTTGACCATGGAGGGG
GGCATAGCCATGACAGCAGAGATCACCGGAGAAGCTCCGGCGGAAGTAAA
AGCGACAGACCTGGGGATGCCGGCAGCCGCTCGTCTGGGGGCAGGCCTCC
GAAAGCGCCGCCGGCGATGAAGGACACGAGGCCTGGCCCCAAAAAGCGCG
CGAGCAGTGCCGACGACGACCGTGACAGCCGTAATCGGTCGCCGTCGACT
TCGAAGACCAGAGTTAGCGGCAGTAAGGAGAAGCAGTCTTCGAGCAGTAA
ACGAGGGATGGGTGGTAGGGGTTCGAGCGCCGGCAGCAGGGGCAGGAGCA
GTTCCGTCTCCGAGCGCTTCGACAGATCTGGCAAGGCTCCCGCATCGCCG
CCGAGAGATCACAGTGCTTCGCCTGTTGTGGAGGTAACCCCTCCGCGCAA
GTCTTCCCCCCGCCCGTCTTCCGCGTCCTCGGGAGCGCGGACGGGCTCCG
ACGAATCCGGCACCCACATCATGAAGTCGAAACGCTCAGGAAAATGCCGC
GAAGGTAGCGGGTCTGGCGCGGACAGGGCACGGCGACAAGGCGCGGAAAT
AGACGACGAGGGACTCGCCAGTCCCGCGGGGAGACGAAACGATTCAGAGG
CTGAGGAGGAGGAGGAGGAGGAGGAGAGCGACTCCCCGGAAAAGATTAGA
CGCGCTGATATCGGCGCAAATCCATGGGCAAGAGAGCTGAGCAACGGTGT
TGGTGGCCTCGGCAGCGGCGGGCCTGCGGTCGTTTCTCAACCTCACCACC
CTAGTGGAAGCCCATCGCAGGACGCTAAGGCACCCGGGATATGGCGTAGG
AGGAGGTCGGGCATGCCCAGCGCACGAGGATCCCGCGACTCAAACGCGAT
GGTGGACGAGGACGAGGAGCTTGCCGGCGAGCAGCTGGCGCGTCATGTCA
CGGGGAGTCCACCACAGCTTAGGGGGGGCAGTGACGACGATGACAACGGT
GATAATGGCGATGATGATGATGACGACGACGACGACGACGACCGGGTACT
CCGAAAGCCTATTTCCCGCTCTCCAGACGCAGCAGGAGCGAGCGCAGACG
ATGGGGGAGTAGAGAGCGACGACGAGGAAGGAGTGGCCATAGAGCTCGAC
TCAGGAGTGTCCAACATGGATGAAGATGAACACTCAGCCCCCGGAGCGGA
CTTGATACCGCTCGCAGCGCCTCCGACAATCACGGCGCCCCCGGCGCCCC
CAGCGCCCGATGTTAAACCCCCGCCTCCGAAGGTGGAACCGCCGCGCCCG
GTGGTGTCCTCTGCCGCCATTGGCGCTGGCCCGTCCAAGAGCAACGGTAA
GAAACGCCCCCGACCGTCGAGCCGGGGCGCTTATCCGGCTGTAGTGCCGC
CGAAGGCACCTTTTGCCCCATCGTCTATCCTCGGCGTACCGGCACTGGCG
CTGGCATCGGCCGCGATCGCGGCAGCACCGGCTCCGGCGCCCAACGGTAA
GCGTTCGCCAGCCGCCGGGAAGGCTGGAGCAGGGAAAGACCGGGATCGGA
CGCCGACGGGAAGCAAGAAGAACCGAGGAAGCGGGAGCGCTGCTGGACTG
AAGCGAGACGGCGGCGGCGCGTCGTCGCCTCCCCAAGCGCGACGGACCCA
GCGCGCTGCGGCGGTTGTTGCGGCGGGCAAGATCAAGAGCACTAGCGAAG
GGGGCGGAAGCGCG
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