mRNA_H-paniculata_contig26293.7177.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26293.7177.1
Unique NamemRNA_H-paniculata_contig26293.7177.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26293.7177.1 vs. uniprot
Match: UPI001C79D330 (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C79D330)

HSP 1 Score: 50.4 bits (119), Expect = 3.510e-5
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:    1 IEICVCDNGATKHMTHDPDVLRNYQECR-GRVRLADGYYLPIEGAGILSIHFRFASNVVLMKLTQVAHVPLLSHHLLSLRRFGDSGH 258
            IE  V D+GA+ H T   ++++NY     G+V LADG  L IEG G + I+    S  +L K   V HVP L  +L+S+ +    GH
Sbjct:  419 IESWVLDSGASFHTTAHREIMQNYVTGDFGKVYLADGEALEIEGMGDVPINLPNGSAWLLQK---VRHVPKLMRNLISVGQLDADGH 502
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BLAST of mRNA_H-paniculata_contig26293.7177.1 vs. uniprot
Match: A0A6G0WQ54_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQ54_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 6.380e-5
Identity = 24/76 (31.58%), Postives = 41/76 (53.95%), Query Frame = 1 
Query:   13 VCDNGATKHMTHDPDVLRNYQECRGRVRLADGYYLPIEGAGILSIHFRFASNVVLMKLTQVAHVPLLSHHLLSLRR 240
            + D+GAT H   D       +   G+VR+A+G  + IEG G + +     S +V +++T V ++P +  +L SL R
Sbjct:  233 ILDSGATDHYCKDISWFTTLEPFTGKVRVANGDDMNIEGRGTIELEMNTPSGIVPIRMTDVMYIPSIQFNLFSLSR 308
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26293.7177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001C79D3303.510e-539.08Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]
A0A6G0WQ54_9STRA6.380e-531.58Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26293contigH-paniculata_contig26293:1862..2122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.7622743-CDS-H-paniculata_contig26293:1861..21221622929785.7622743-CDS-H-paniculata_contig26293:1861..2122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26293 1862..2122 -
1691481009.8036306-CDS-H-paniculata_contig26293:1861..21221691481009.8036306-CDS-H-paniculata_contig26293:1861..2122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26293 1862..2122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26293.7177.1prot_H-paniculata_contig26293.7177.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26293 1862..2122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26293.7177.1

>prot_H-paniculata_contig26293.7177.1 ID=prot_H-paniculata_contig26293.7177.1|Name=mRNA_H-paniculata_contig26293.7177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
IEICVCDNGATKHMTHDPDVLRNYQECRGRVRLADGYYLPIEGAGILSIH
FRFASNVVLMKLTQVAHVPLLSHHLLSLRRFGDSGHK
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mRNA from alignment at H-paniculata_contig26293:1862..2122-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26293.7177.1 ID=mRNA_H-paniculata_contig26293.7177.1|Name=mRNA_H-paniculata_contig26293.7177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at H-paniculata_contig26293:1862..2122- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGAGATCTGTGTCTGTGATAATGGGGCAACGAAGCACATGACTCATGA
CCCTGATGTTCTTCGTAATTACCAGGAATGTAGGGGGCGTGTTCGCCTTG
CTGATGGTTATTATCTCCCCATCGAAGGAGCTGGAATTTTGTCCATCCAC
TTTCGATTTGCCTCTAACGTAGTATTGATGAAATTAACTCAAGTTGCTCA
CGTACCGCTTCTGAGTCATCACCTCCTATCTCTCCGTAGATTCGGGGACT
CTGGTCACAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig26293:1862..2122-

>mRNA_H-paniculata_contig26293.7177.1 ID=mRNA_H-paniculata_contig26293.7177.1|Name=mRNA_H-paniculata_contig26293.7177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig26293:1862..2122- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGAGATCTGTGTCTGTGATAATGGGGCAACGAAGCACATGACTCATGA
CCCTGATGTTCTTCGTAATTACCAGGAATGTAGGGGGCGTGTTCGCCTTG
CTGATGGTTATTATCTCCCCATCGAAGGAGCTGGAATTTTGTCCATCCAC
TTTCGATTTGCCTCTAACGTAGTATTGATGAAATTAACTCAAGTTGCTCA
CGTACCGCTTCTGAGTCATCACCTCCTATCTCTCCGTAGATTCGGGGACT
CTGGTCACAAAATAGAGATCTGTGTCTGTGATAATGGGGCAACGAAGCAC
ATGACTCATGACCCTGATGTTCTTCGTAATTACCAGGAATGTAGGGGGCG
TGTTCGCCTTGCTGATGGTTATTATCTCCCCATCGAAGGAGCTGGAATTT
TGTCCATCCACTTTCGATTTGCCTCTAACGTAGTATTGATGAAATTAACT
CAAGTTGCTCACGTACCGCTTCTGAGTCATCACCTCCTATCTCTCCGTAG
ATTCGGGGACTCTGGTCACAAA
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