prot_H-paniculata_contig26276.7172.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig26276.7172.1
Unique Nameprot_H-paniculata_contig26276.7172.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length164
Homology
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BLAST of mRNA_H-paniculata_contig26276.7172.1 vs. uniprot
Match: D7FJJ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ8_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 1.680e-58
Identity = 103/165 (62.42%), Postives = 124/165 (75.15%), Query Frame = 0 
Query:    1 MDEDVELIAKARDFAAEMIKSPYYITPKYAVKDVERYSDGLHENGNQGQSLASQLSPVMKAYLPPELLDRSS--TTAKTGTAIGLKPLPAFDAKSLSALEDRERKNAEKGGADNDXXXXXXXXDAAIMSDVEGDMEEEEQDDDYGVDHYKSGDESAGDDEPAAVF 163
            +++DV  +AK R+ AA+M KS YYITPKYAVKDVERYSDG+H  G +GQSLASQLS  MK +LPPEL DR +  TTA  G   GLKPLPAFD KSL+ALED+ERK+AE GGA+ +        DA ++SDVE ++EE     DY VDHY+SG+ES GDDEPAAVF
Sbjct:   24 LEDDVSHVAKQRELAADMSKSIYYITPKYAVKDVERYSDGVHSGGYRGQSLASQLSAGMKRHLPPELTDRPAIGTTAAGGKLPGLKPLPAFDGKSLTALEDKERKSAETGGAEKEKDKE----DAGMLSDVEAEVEEXXXXXDYAVDHYESGNESGGDDEPAAVF 184
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BLAST of mRNA_H-paniculata_contig26276.7172.1 vs. uniprot
Match: A0A812UFG2_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UFG2_SYMMI)

HSP 1 Score: 60.5 bits (145), Expect = 1.610e-8
Identity = 56/156 (35.90%), Postives = 74/156 (47.44%), Query Frame = 0 
Query:   21 SPYYITPKYAVKDVERYSDGLHENGNQGQSLASQLSPV--MKAYLPPELLDRSSTTAKTGTAIGLKPLPAFDAKS-----LSALEDRERKN--AEKGGA-DNDXXXXXXXXDAAIMSDVEGDMEEEEQDDDYGVDHYKSGDE--SAGDDEPA-AVF 163
            SP+++  K   KD+ RYSD    NG Q   +      V  M  Y+PP+LLD S  + ++G     + L +  A       L  LE +E      E+GGA + +        DA      EGD+E     DDYGVDHY S D    +GDDE A AVF
Sbjct:    4 SPFHLVEKKQDKDIARYSDKYRMNGLQINVINYISDGVVDMSRYIPPDLLDISDASRRSGKLRRKRKLASVGATGDDLLRLQRLEQQENGTLAGEEGGAKEKESGEGGDVSDADAELGQEGDLE-----DDYGVDHYASDDGFGGSGDDEEAEAVF 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26276.7172.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJJ8_ECTSI1.680e-5862.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812UFG2_SYMMI1.610e-835.90Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024661DNA-directed RNA polymerase III, subunit Rpc31PFAMPF11705RNA_pol_3_Rpc31coord: 3..147
e-value: 1.2E-9
score: 38.8
IPR024661DNA-directed RNA polymerase III, subunit Rpc31PANTHERPTHR15367DNA-DIRECTED RNA POLYMERASE IIIcoord: 3..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26276contigH-paniculata_contig26276:1689..2180 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26276.7172.1mRNA_H-paniculata_contig26276.7172.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig26276 1629..2480 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig26276.7172.1 ID=prot_H-paniculata_contig26276.7172.1|Name=mRNA_H-paniculata_contig26276.7172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MDEDVELIAKARDFAAEMIKSPYYITPKYAVKDVERYSDGLHENGNQGQS
LASQLSPVMKAYLPPELLDRSSTTAKTGTAIGLKPLPAFDAKSLSALEDR
ERKNAEKGGADNDKDKDKDKDDAAIMSDVEGDMEEEEQDDDYGVDHYKSG
DESAGDDEPAAVF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024661RNA_pol_III_Rpc31