mRNA_H-paniculata_contig26276.7172.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26276.7172.1
Unique NamemRNA_H-paniculata_contig26276.7172.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig26276.7172.1 vs. uniprot
Match: D7FJJ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ8_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 8.200e-70
Identity = 118/184 (64.13%), Postives = 143/184 (77.72%), Query Frame = 1 
Query:    4 QNEAPVLYPRIELPGPVRIMDEDVELIAKARDFAAEMIKSPYYITPKYAVKDVERYSDGLHENGNQGQSLASQLSPVMKAYLPPELLDRSS--TTAKTGTAIGLKPLPAFDAKSLSALEDRERKNAEKGGADNDXXXXXXXXDAAIMSDVEGDMEEEEQDDDYGVDHYKSGDESAGDDEPAAVF 549
            Q+EAPVLYPR++LPGP+RI+++DV  +AK R+ AA+M KS YYITPKYAVKDVERYSDG+H  G +GQSLASQLS  MK +LPPEL DR +  TTA  G   GLKPLPAFD KSL+ALED+ERK+AE GGA+ +        DA ++SDVE ++EE     DY VDHY+SG+ES GDDEPAAVF
Sbjct:    5 QSEAPVLYPRMDLPGPIRILEDDVSHVAKQRELAADMSKSIYYITPKYAVKDVERYSDGVHSGGYRGQSLASQLSAGMKRHLPPELTDRPAIGTTAAGGKLPGLKPLPAFDGKSLTALEDKERKSAETGGAEKEKDKE----DAGMLSDVEAEVEEXXXXXDYAVDHYESGNESGGDDEPAAVF 184
[Close]
BLAST of mRNA_H-paniculata_contig26276.7172.1 vs. uniprot
Match: A0A812UFG2_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UFG2_SYMMI)

HSP 1 Score: 61.2 bits (147), Expect = 5.740e-8
Identity = 56/156 (35.90%), Postives = 74/156 (47.44%), Query Frame = 1 
Query:  121 SPYYITPKYAVKDVERYSDGLHENGNQGQSLASQLSPV--MKAYLPPELLDRSSTTAKTGTAIGLKPLPAFDAKS-----LSALEDRERKN--AEKGGA-DNDXXXXXXXXDAAIMSDVEGDMEEEEQDDDYGVDHYKSGDE--SAGDDEPA-AVF 549
            SP+++  K   KD+ RYSD    NG Q   +      V  M  Y+PP+LLD S  + ++G     + L +  A       L  LE +E      E+GGA + +        DA      EGD+E     DDYGVDHY S D    +GDDE A AVF
Sbjct:    4 SPFHLVEKKQDKDIARYSDKYRMNGLQINVINYISDGVVDMSRYIPPDLLDISDASRRSGKLRRKRKLASVGATGDDLLRLQRLEQQENGTLAGEEGGAKEKESGEGGDVSDADAELGQEGDLE-----DDYGVDHYASDDGFGGSGDDEEAEAVF 154
[Close]
BLAST of mRNA_H-paniculata_contig26276.7172.1 vs. uniprot
Match: A0A6G0XJD9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJD9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.070e-5
Identity = 57/183 (31.15%), Postives = 82/183 (44.81%), Query Frame = 1 
Query:   22 LYPRIELPGPVRIMDEDVELIAKARDFAAEMIKSPYYITPKYAVKDVERYSDGLHENGNQGQSLASQLSPVMKAYLPPELLDR------SSTTAKTGTAIGLKPLPAFDAKSLSALEDRERKNAEKGGADNDXXXXXXXXDAAIMSDVEGDMEEE----EQDDDYGVDHYKSGDESAGDDEPA 540
            LYP ++LP PV +   D+ L+ K R  A  M     Y+ P  A K  +  +D +H    +       L      ++P E+ +         T    G +  L+P P     +L +LE RE+K+  K  AD             I  D +G+M+EE    E+D DYGVDHY S D+  G DE A
Sbjct:   51 LYPPVKLPAPVELSHSDMYLVEKMRVIADRMT----YLYP--ASKPTDDEADIVHVTLPE-----MALDDPHMCFVPKEINENIRHDATDLTLVANGRSTVLRPRPVDY--TLKSLEQREQKS--KAAADE------------IAPDDDGEMDEEDMEEEEDVDYGVDHYASEDDDDGYDEEA 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26276.7172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJJ8_ECTSI8.200e-7064.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812UFG2_SYMMI5.740e-835.90Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A6G0XJD9_9STRA1.070e-531.15Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26276contigH-paniculata_contig26276:1629..2480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA-directed RNA polymerase III, subunit Rpc31
Ec32 orthologEc-04_006380.1
Exons1
Model size852
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26276.7172.1prot_H-paniculata_contig26276.7172.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26276 1689..2180 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.2756107-UTR-H-paniculata_contig26276:1628..16881622929785.2756107-UTR-H-paniculata_contig26276:1628..1688Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26276 1629..1688 +
1691481009.611653-UTR-H-paniculata_contig26276:1628..16881691481009.611653-UTR-H-paniculata_contig26276:1628..1688Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26276 1629..1688 +
1622929785.3096092-UTR-H-paniculata_contig26276:2180..24801622929785.3096092-UTR-H-paniculata_contig26276:2180..2480Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26276 2181..2480 +
1691481009.6308722-UTR-H-paniculata_contig26276:2180..24801691481009.6308722-UTR-H-paniculata_contig26276:2180..2480Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26276 2181..2480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.2951224-CDS-H-paniculata_contig26276:1688..21801622929785.2951224-CDS-H-paniculata_contig26276:1688..2180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26276 1689..2180 +
1691481009.6211503-CDS-H-paniculata_contig26276:1688..21801691481009.6211503-CDS-H-paniculata_contig26276:1688..2180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26276 1689..2180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26276.7172.1

>prot_H-paniculata_contig26276.7172.1 ID=prot_H-paniculata_contig26276.7172.1|Name=mRNA_H-paniculata_contig26276.7172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MDEDVELIAKARDFAAEMIKSPYYITPKYAVKDVERYSDGLHENGNQGQS
LASQLSPVMKAYLPPELLDRSSTTAKTGTAIGLKPLPAFDAKSLSALEDR
ERKNAEKGGADNDKDKDKDKDDAAIMSDVEGDMEEEEQDDDYGVDHYKSG
DESAGDDEPAAVF*
back to top

mRNA from alignment at H-paniculata_contig26276:1629..2480+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26276.7172.1 ID=mRNA_H-paniculata_contig26276.7172.1|Name=mRNA_H-paniculata_contig26276.7172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=852bp|location=Sequence derived from alignment at H-paniculata_contig26276:1629..2480+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCAGAATGAGGCGCCGGTGCTTTATCCGCGCATAGAACTTCCAGGGCC
CGTTCGGATAATGGACGAAGACGTTGAACTCATAGCAAAAGCTAGAGATT
TCGCCGCAGAAATGATCAAATCACCATACTACATTACCCCCAAGTATGCC
GTCAAGGACGTGGAGAGGTATTCAGATGGTCTGCACGAAAATGGAAATCA
GGGGCAATCACTTGCTAGCCAATTATCCCCGGTGATGAAAGCGTATTTGC
CACCAGAGCTTCTTGACCGCTCGTCTACAACGGCGAAGACCGGAACAGCC
ATCGGTCTCAAGCCCCTGCCGGCCTTCGATGCTAAGTCGCTATCTGCATT
GGAAGACAGAGAACGAAAAAACGCGGAAAAGGGAGGCGCTGACAACGACA
AGGACAAGGACAAGGACAAGGACGATGCTGCCATCATGAGCGATGTAGAA
GGGGACATGGAGGAAGAAGAACAAGACGACGACTATGGAGTCGATCACTA
CAAGAGTGGAGACGAAAGCGCAGGCGACGACGAGCCGGCAGCGGTGTTTT
GAGTTCGAGTAGAGACTTTGTCTGAACCTATCACGTATCATGGATTTGTC
TCCACACATACTCGTCCGGGTCCATTGTGGGAAGTGTAAAGAGCGTGACC
GCAACTGTAGTTTCGTGTTCGTGTTGGATTCGTCGTGTCAGGTCAGCTTT
CGAGAGGGCTTTTGTGACTTTCTGTTTGGGCTCAGTTAAATGTAGTTTTT
CTGGTTCCGAATACCTCTCGTGTTTGACTGCTTTGCTATTCGTAAATGGT
GAGTGAATACAGTGATTATTTCCATACATCATGGTGAAGTTGATGACTCC
AC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig26276:1629..2480+

>mRNA_H-paniculata_contig26276.7172.1 ID=mRNA_H-paniculata_contig26276.7172.1|Name=mRNA_H-paniculata_contig26276.7172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig26276:1629..2480+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGAAGACGTTGAACTCATAGCAAAAGCTAGAGATTTCGCCGCAGA
AATGATCAAATCACCATACTACATTACCCCCAAGTATGCCGTCAAGGACG
TGGAGAGGTATTCAGATGGTCTGCACGAAAATGGAAATCAGGGGCAATCA
CTTGCTAGCCAATTATCCCCGGTGATGAAAGCGTATTTGCCACCAGAGCT
TCTTGACCGCTCGTCTACAACGGCGAAGACCGGAACAGCCATCGGTCTCA
AGCCCCTGCCGGCCTTCGATGCTAAGTCGCTATCTGCATTGGAAGACAGA
GAACGAAAAAACGCGGAAAAGGGAGGCGCTGACAACGACAAGGACAAGGA
CAAGGACAAGGACGATGCTGCCATCATGAGCGATGTAGAAGGGGACATGG
AGGAAGAAGAACAAGACGACGACTATGGAGTCGATCACTACAAGAGTGGA
GACGAAAGCGCAGGCGACGACGAGCCGGCAGCGGTGTTTTGAATGGACGA
AGACGTTGAACTCATAGCAAAAGCTAGAGATTTCGCCGCAGAAATGATCA
AATCACCATACTACATTACCCCCAAGTATGCCGTCAAGGACGTGGAGAGG
TATTCAGATGGTCTGCACGAAAATGGAAATCAGGGGCAATCACTTGCTAG
CCAATTATCCCCGGTGATGAAAGCGTATTTGCCACCAGAGCTTCTTGACC
GCTCGTCTACAACGGCGAAGACCGGAACAGCCATCGGTCTCAAGCCCCTG
CCGGCCTTCGATGCTAAGTCGCTATCTGCATTGGAAGACAGAGAACGAAA
AAACGCGGAAAAGGGAGGCGCTGACAACGACAAGGACAAGGACAAGGACA
AGGACGATGCTGCCATCATGAGCGATGTAGAAGGGGACATGGAGGAAGAA
GAACAAGACGACGACTATGGAGTCGATCACTACAAGAGTGGAGACGAAAG
CGCAGGCGACGACGAGCCGGCAGCGGTGTTTTGA
back to top