mRNA_H-paniculata_contig26229.7166.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.310e-19 Identity = 57/150 (38.00%), Postives = 84/150 (56.00%), Query Frame = 2
Query: 5 AGMAGYKQGWPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGERRSVPSTLAEDRVP----SQATPSVKTI---GTTREDLLDKWRH---EIEEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
AG G K GW CDW D+ PPS ++R++ G +R + VLP+SWD A++ L L G R V + L + P + T KT G T E+L KW+ E+E +G TV N +ALEGAL++RE++G+++ ++VFL
Sbjct: 217 AGNHGSKGGWACDW-RDEEDDQPPPSFLHRLVNKPDGRGLRGTQTVLPRSWDIALTVLEALEHG-RDPVEAVLGKSPDPDGEDAAETAGGKTDVYQGITVEELGTKWQETVDELERRGITVTNAKNALEGALSVREFDGSLVRRENFVFL 364
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 2.950e-18 Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = 2
Query: 17 GYKQGWPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGE---RRSVPSTLAEDRVPSQATPSVKTI---GTTREDLLDKWRH---EIEEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
G K W CDW + D+ PPSL++R++ G +R +MVLP+SWD + L L G + +L DR + T T+ G T EDL KW+ E+E +G V N +ALEGAL+IRE++G+++ ++VFL
Sbjct: 336 GSKGDWACDWHDMK-DDHPPPSLLHRLVNKPDGGGLRGAQMVLPRSWDTVLIVLDSLEQGRDPVEVVLRKSLHPDRGDATETAGGNTVVYQGITVEDLSKKWQKIVDELERRGIIVTNAKNALEGALSIREFDGSLVRHETFVFL 479
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 5.430e-18 Identity = 52/143 (36.36%), Postives = 74/143 (51.75%), Query Frame = 2
Query: 23 KQGWPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGER------RSVPSTLAEDRVPSQATPSVKTIGTTREDLLDKWRHEI---EEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
K GW CDW AD + PSL++R++ G +R +MVLP+SWD A++ L L G R P D + + G T EDL KW+ + E G TV N +ALEGAL IRE++G+++ ++FL
Sbjct: 388 KGGWACDW-RDMADGNPSPSLLHRLVNKPDGRGLRGTQMVLPRSWDIALTVLEALEHGRDPVEVVLRKSPDPDRGDATETARGETAMYQGITVEDLSIKWQETVDGLERSGVTVTNAKNALEGALLIREFDGSLIRYEKFIFL 529
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 1.030e-17 Identity = 57/150 (38.00%), Postives = 84/150 (56.00%), Query Frame = 2
Query: 5 AGMAGYKQGWPCDWCTGRADEDRP-PSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGERRSVPSTLAE----DRVPSQATPSVKTI--GTTREDLLDKWRH---EIEEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
AG +K GW CDW ++D+P PS ++R++ G +R +MVLP+SWD A++ L L G R V L + DR T + G T E+L KW+ E+E +G TV N +ALEGAL+IRE++G+++ +VFL
Sbjct: 597 AGNHVWKGGWACDWRN--VEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDVALAVLEALEHG-RDPVEVVLRKSPEPDRGDETETGGKADVYQGITVEELGTKWQETVDELERRGITVTNMMNALEGALSIREFDGSLVRHEKFVFL 743
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: A0A6H5L0H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H4_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 3.370e-17 Identity = 53/141 (37.59%), Postives = 80/141 (56.74%), Query Frame = 2
Query: 32 WPCDWCTGRADEDRP-PSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGE---RRSVPSTLAEDRVPSQATPSVKTI---GTTREDLLDKWR---HEIEEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
W CDW ++D+P PS ++R++ G +R +MVLP+SWD A++ L L G + +L DR + T KT G T E+L KW+ E+E +G TV N +ALEGAL+IRE++G+++ +VFL
Sbjct: 53 WACDWRN--VEDDQPSPSFLHRLVNKPDGRGLRGTQMVLPRSWDIALTVLEALEHGRDPVEVVLHKSLDPDRGNATKTAEGKTDVYQGITVEELGTKWQGTVDELERRGITVTNAKNALEGALSIREFDGSLVRRDKFVFL 191
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 4.630e-17 Identity = 52/150 (34.67%), Postives = 79/150 (52.67%), Query Frame = 2
Query: 8 GMAGYKQGWPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGERRSVPSTLAEDRVPSQATPSVKTIGTTR--------EDLLDKWRHEIEE---KGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
G KQGW CDW D P SL+ R++ +R +MVLP+SWD A++FL L G P + + P + + +T G T E+L +W+ ++E +G TV N +ALEGAL+IRE++G+++ +VFL
Sbjct: 363 GNHALKQGWACDWRDVEGDMSSP-SLLYRLVNKPDQGGLRGVQMVLPRSWDVALTFLDSLEYGRH---PVEMVMLKSPDSDSGATETAGGTTTVYQGITVEELSARWQGTVDELGRRGITVTNAENALEGALSIREFDGSLVCHEKFVFL 508
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 8.930e-17 Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 2
Query: 23 KQGWPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGER--RSVPSTLAE-DRVPSQATPSVKT---IGTTREDLLDKWRHEI---EEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
++GW CDW R D+ PP L++R++ G +R +MVLP+SWD A++ L L G V LAE DR + T + +T G T E L KW+ + +G V N +ALEGAL+IRE++G+++ +VFL
Sbjct: 432 ERGWACDWRDDR-DDMPPPGLVHRLVNKPDGSGLRGTQMVLPRSWDIALTVLEALERGRDPVEVVVEHLAEPDREDATRTAARQTGVYQGITVEALRVKWQEAVVGLARRGVNVTNAKNALEGALSIREFDGSLVRHEMFVFL 573
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 1.220e-16 Identity = 52/141 (36.88%), Postives = 79/141 (56.03%), Query Frame = 2
Query: 29 GWPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGER--RSVPSTLAE-DRVPSQATPSVKT---IGTTREDLLDKWRHE---IEEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
GW CDW G+ D++ PSL++R++ G +R +MV+P+SWD A++ L L G V L + D + T + KT G T EDL KW+ + + TV N +ALEGAL IRE++G+++ ++VFL
Sbjct: 534 GWTCDWRDGK-DDNPSPSLLHRLVNKPDGGGLRGAQMVIPRSWDIALTVLEALERGRDPVEMVVEDLGDADGGDATGTAACKTGLYHGITAEDLRTKWQEAAVGLAGRDITVTNADNALEGALAIREFDGSLVRHETFVFL 673
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 2.280e-16 Identity = 52/144 (36.11%), Postives = 73/144 (50.69%), Query Frame = 2
Query: 32 WPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGER--RSVPSTLAEDRVPSQATPSVKTI--------GTTREDLLDKWRHEI---EEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
W CDW G E +P SL++R++ N G+ +R +VLP+SW+ + L L G S + P A V + G TR DL KW + EE G ++ NP ALEGAL IRE+EG+++ +YVFL
Sbjct: 449 WACDWSDGMCVESQP-SLLHRVMYNNKGE-LRGASLVLPRSWNIGLGVLDALGSGRDPVESAQQMVLASGGPKGAAEVVPAVYQRNQGVGGLTRADLSTKWNDVVAALEEDGVSIVNPDHALEGALLIREHEGSLVRHETYVFL 590
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 2.280e-16 Identity = 54/144 (37.50%), Postives = 74/144 (51.39%), Query Frame = 2
Query: 32 WPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGER--RSVPSTLAEDRVPSQATPSVKTI--------GTTREDLLDKWRHEI---EEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
W CDW G + E +P SL++R++ N G+ VR +VLP+SW+ A+ L L G S + P AT V + G TR DL KW + E G +V P ALEGAL IRE+EG+++ +YVFL
Sbjct: 485 WACDWREGVSVESQP-SLLHRVMYNSKGN-VRGASLVLPRSWNIALEVLDALGSGRNPVESAQQNVLASGGPKGATEVVPAVYQRNQGVGGLTRADLSTKWNEVVAALEGDGVSVVKPDHALEGALLIREHEGSLVRHETYVFL 626 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26229.7166.1 >prot_H-paniculata_contig26229.7166.1 ID=prot_H-paniculata_contig26229.7166.1|Name=mRNA_H-paniculata_contig26229.7166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp MAGYKQGWPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDback to top mRNA from alignment at H-paniculata_contig26229:482..2951- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26229.7166.1 ID=mRNA_H-paniculata_contig26229.7166.1|Name=mRNA_H-paniculata_contig26229.7166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2470bp|location=Sequence derived from alignment at H-paniculata_contig26229:482..2951- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26229:482..2951- >mRNA_H-paniculata_contig26229.7166.1 ID=mRNA_H-paniculata_contig26229.7166.1|Name=mRNA_H-paniculata_contig26229.7166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig26229:482..2951- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |