mRNA_H-paniculata_contig26229.7166.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26229.7166.1
Unique NamemRNA_H-paniculata_contig26229.7166.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.310e-19
Identity = 57/150 (38.00%), Postives = 84/150 (56.00%), Query Frame = 2
Query:    5 AGMAGYKQGWPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGERRSVPSTLAEDRVP----SQATPSVKTI---GTTREDLLDKWRH---EIEEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
            AG  G K GW CDW     D+  PPS ++R++    G  +R  + VLP+SWD A++ L  L  G R  V + L +   P    +  T   KT    G T E+L  KW+    E+E +G TV N  +ALEGAL++RE++G+++   ++VFL
Sbjct:  217 AGNHGSKGGWACDW-RDEEDDQPPPSFLHRLVNKPDGRGLRGTQTVLPRSWDIALTVLEALEHG-RDPVEAVLGKSPDPDGEDAAETAGGKTDVYQGITVEELGTKWQETVDELERRGITVTNAKNALEGALSVREFDGSLVRRENFVFL 364          
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.950e-18
Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = 2
Query:   17 GYKQGWPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGE---RRSVPSTLAEDRVPSQATPSVKTI---GTTREDLLDKWRH---EIEEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
            G K  W CDW   + D+  PPSL++R++    G  +R  +MVLP+SWD  +  L  L  G       +  +L  DR  +  T    T+   G T EDL  KW+    E+E +G  V N  +ALEGAL+IRE++G+++   ++VFL
Sbjct:  336 GSKGDWACDWHDMK-DDHPPPSLLHRLVNKPDGGGLRGAQMVLPRSWDTVLIVLDSLEQGRDPVEVVLRKSLHPDRGDATETAGGNTVVYQGITVEDLSKKWQKIVDELERRGIIVTNAKNALEGALSIREFDGSLVRHETFVFL 479          
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.430e-18
Identity = 52/143 (36.36%), Postives = 74/143 (51.75%), Query Frame = 2
Query:   23 KQGWPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGER------RSVPSTLAEDRVPSQATPSVKTIGTTREDLLDKWRHEI---EEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
            K GW CDW    AD +  PSL++R++    G  +R  +MVLP+SWD A++ L  L  G        R  P     D   +    +    G T EDL  KW+  +   E  G TV N  +ALEGAL IRE++G+++    ++FL
Sbjct:  388 KGGWACDW-RDMADGNPSPSLLHRLVNKPDGRGLRGTQMVLPRSWDIALTVLEALEHGRDPVEVVLRKSPDPDRGDATETARGETAMYQGITVEDLSIKWQETVDGLERSGVTVTNAKNALEGALLIREFDGSLIRYEKFIFL 529          
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.030e-17
Identity = 57/150 (38.00%), Postives = 84/150 (56.00%), Query Frame = 2
Query:    5 AGMAGYKQGWPCDWCTGRADEDRP-PSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGERRSVPSTLAE----DRVPSQATPSVKTI--GTTREDLLDKWRH---EIEEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
            AG   +K GW CDW     ++D+P PS ++R++    G  +R  +MVLP+SWD A++ L  L  G R  V   L +    DR     T     +  G T E+L  KW+    E+E +G TV N  +ALEGAL+IRE++G+++    +VFL
Sbjct:  597 AGNHVWKGGWACDWRN--VEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDVALAVLEALEHG-RDPVEVVLRKSPEPDRGDETETGGKADVYQGITVEELGTKWQETVDELERRGITVTNMMNALEGALSIREFDGSLVRHEKFVFL 743          
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: A0A6H5L0H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.370e-17
Identity = 53/141 (37.59%), Postives = 80/141 (56.74%), Query Frame = 2
Query:   32 WPCDWCTGRADEDRP-PSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGE---RRSVPSTLAEDRVPSQATPSVKTI---GTTREDLLDKWR---HEIEEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
            W CDW     ++D+P PS ++R++    G  +R  +MVLP+SWD A++ L  L  G       +  +L  DR  +  T   KT    G T E+L  KW+    E+E +G TV N  +ALEGAL+IRE++G+++    +VFL
Sbjct:   53 WACDWRN--VEDDQPSPSFLHRLVNKPDGRGLRGTQMVLPRSWDIALTVLEALEHGRDPVEVVLHKSLDPDRGNATKTAEGKTDVYQGITVEELGTKWQGTVDELERRGITVTNAKNALEGALSIREFDGSLVRRDKFVFL 191          
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.630e-17
Identity = 52/150 (34.67%), Postives = 79/150 (52.67%), Query Frame = 2
Query:    8 GMAGYKQGWPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGERRSVPSTLAEDRVPSQATPSVKTIGTTR--------EDLLDKWRHEIEE---KGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
            G    KQGW CDW     D   P SL+ R++       +R  +MVLP+SWD A++FL  L  G     P  +   + P   + + +T G T         E+L  +W+  ++E   +G TV N  +ALEGAL+IRE++G+++    +VFL
Sbjct:  363 GNHALKQGWACDWRDVEGDMSSP-SLLYRLVNKPDQGGLRGVQMVLPRSWDVALTFLDSLEYGRH---PVEMVMLKSPDSDSGATETAGGTTTVYQGITVEELSARWQGTVDELGRRGITVTNAENALEGALSIREFDGSLVCHEKFVFL 508          
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 8.930e-17
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 2
Query:   23 KQGWPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGER--RSVPSTLAE-DRVPSQATPSVKT---IGTTREDLLDKWRHEI---EEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
            ++GW CDW   R D+  PP L++R++    G  +R  +MVLP+SWD A++ L  L  G      V   LAE DR  +  T + +T    G T E L  KW+  +     +G  V N  +ALEGAL+IRE++G+++    +VFL
Sbjct:  432 ERGWACDWRDDR-DDMPPPGLVHRLVNKPDGSGLRGTQMVLPRSWDIALTVLEALERGRDPVEVVVEHLAEPDREDATRTAARQTGVYQGITVEALRVKWQEAVVGLARRGVNVTNAKNALEGALSIREFDGSLVRHEMFVFL 573          
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.220e-16
Identity = 52/141 (36.88%), Postives = 79/141 (56.03%), Query Frame = 2
Query:   29 GWPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGER--RSVPSTLAE-DRVPSQATPSVKT---IGTTREDLLDKWRHE---IEEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
            GW CDW  G+ D++  PSL++R++    G  +R  +MV+P+SWD A++ L  L  G      V   L + D   +  T + KT    G T EDL  KW+     +  +  TV N  +ALEGAL IRE++G+++   ++VFL
Sbjct:  534 GWTCDWRDGK-DDNPSPSLLHRLVNKPDGGGLRGAQMVIPRSWDIALTVLEALERGRDPVEMVVEDLGDADGGDATGTAACKTGLYHGITAEDLRTKWQEAAVGLAGRDITVTNADNALEGALAIREFDGSLVRHETFVFL 673          
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.280e-16
Identity = 52/144 (36.11%), Postives = 73/144 (50.69%), Query Frame = 2
Query:   32 WPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGER--RSVPSTLAEDRVPSQATPSVKTI--------GTTREDLLDKWRHEI---EEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
            W CDW  G   E +P SL++R++ N  G+ +R   +VLP+SW+  +  L  L  G     S    +     P  A   V  +        G TR DL  KW   +   EE G ++ NP  ALEGAL IRE+EG+++   +YVFL
Sbjct:  449 WACDWSDGMCVESQP-SLLHRVMYNNKGE-LRGASLVLPRSWNIGLGVLDALGSGRDPVESAQQMVLASGGPKGAAEVVPAVYQRNQGVGGLTRADLSTKWNDVVAALEEDGVSIVNPDHALEGALLIREHEGSLVRHETYVFL 590          
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.280e-16
Identity = 54/144 (37.50%), Postives = 74/144 (51.39%), Query Frame = 2
Query:   32 WPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWDFAMSFLGGLSGGER--RSVPSTLAEDRVPSQATPSVKTI--------GTTREDLLDKWRHEI---EEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL 424
            W CDW  G + E +P SL++R++ N  G+ VR   +VLP+SW+ A+  L  L  G     S    +     P  AT  V  +        G TR DL  KW   +   E  G +V  P  ALEGAL IRE+EG+++   +YVFL
Sbjct:  485 WACDWREGVSVESQP-SLLHRVMYNSKGN-VRGASLVLPRSWNIALEVLDALGSGRNPVESAQQNVLASGGPKGATEVVPAVYQRNQGVGGLTRADLSTKWNEVVAALEGDGVSVVKPDHALEGALLIREHEGSLVRHETYVFL 626          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26229.7166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5K1K4_9PHAE1.310e-1938.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G431_ECTSI2.950e-1837.24LRR-GTPase of the ROCO family, incomplete sequence... [more]
A0A6H5KSZ8_9PHAE5.430e-1836.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF46_ECTSI1.030e-1738.00LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5L0H4_9PHAE3.370e-1737.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L650_9PHAE4.630e-1734.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUC9_ECTSI8.930e-1737.76LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUD0_ECTSI1.220e-1636.88LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FL89_ECTSI2.280e-1636.11LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FL98_ECTSI2.280e-1637.50LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26229contigH-paniculata_contig26229:482..2951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue2.3e-16
Seed eggNOG ortholog2880.D7G431
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size425
Cds size414
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26229.7166.1prot_H-paniculata_contig26229.7166.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26229 482..2941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.808462-CDS-H-paniculata_contig26229:481..5271622929783.808462-CDS-H-paniculata_contig26229:481..527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26229 482..527 -
1691481008.9141688-CDS-H-paniculata_contig26229:481..5271691481008.9141688-CDS-H-paniculata_contig26229:481..527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26229 482..527 -
1622929783.822296-CDS-H-paniculata_contig26229:2443..26201622929783.822296-CDS-H-paniculata_contig26229:2443..2620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26229 2444..2620 -
1691481008.9251194-CDS-H-paniculata_contig26229:2443..26201691481008.9251194-CDS-H-paniculata_contig26229:2443..2620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26229 2444..2620 -
1622929783.8391955-CDS-H-paniculata_contig26229:2750..29411622929783.8391955-CDS-H-paniculata_contig26229:2750..2941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26229 2751..2941 -
1691481008.932583-CDS-H-paniculata_contig26229:2750..29411691481008.932583-CDS-H-paniculata_contig26229:2750..2941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26229 2751..2941 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.8599846-UTR-H-paniculata_contig26229:2941..29511622929783.8599846-UTR-H-paniculata_contig26229:2941..2951Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26229 2942..2951 -
1691481008.9401531-UTR-H-paniculata_contig26229:2941..29511691481008.9401531-UTR-H-paniculata_contig26229:2941..2951Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26229 2942..2951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26229.7166.1

>prot_H-paniculata_contig26229.7166.1 ID=prot_H-paniculata_contig26229.7166.1|Name=mRNA_H-paniculata_contig26229.7166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MAGYKQGWPCDWCTGRADEDRPPSLINRIIRNGPGDCVRAEKMVLPQSWD
FAMSFLGGLSGGERRSVPSTLAEDRVPSQATPSVKTIGTTREDLLDKWRH
EIEEKGWTVPNPASALEGALTIREYEGTVLSLGSYVFL
back to top

mRNA from alignment at H-paniculata_contig26229:482..2951-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26229.7166.1 ID=mRNA_H-paniculata_contig26229.7166.1|Name=mRNA_H-paniculata_contig26229.7166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2470bp|location=Sequence derived from alignment at H-paniculata_contig26229:482..2951- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTAGCGGGGATGGCGGGGTACAAACAAGGGTGGCCTTGTGATTGGTGCA CGGGGAGGGCGGATGAGGACAGGCCCCCGAGCCTTATCAACCGCATCATC CGCAATGGTCCGGGCGACTGTGTGCGGGCAGAGAAAATGGTGCTGCCACA AAGTTGGGACTTTGCCATGTCTTTTCTCGGTGGCCTTAGCGGGGGCGAAA GGTACGTGCGTTTGTCAATGGTTGGTGATATGTTTAAATAGGGCGCCCAG CCGTGGCTTCGATAATTCATGTGGTCGTGTTGTAATCTCGCCTACTCATC GGTAGTCATCATTTTCCACCACTGTTTGCAGGCGCTCTGTCCCTTCAACG TTGGCGGAAGACCGAGTGCCATCACAAGCGACGCCGAGCGTCAAAACCAT CGGCACGACGCGCGAGGACCTGCTAGATAAGTGGAGGCACGAGATTGAAG AGAAGGGATGGACTGTCCCGAACCCCGCGAGCGCGTTAGAAGGGGCGCTT ACCATCAGGTCTGGTTTGAGCTCATATCATGGGTATCGTACGTGGATACG GTATCTATCCATGAATATAGGCACAACTAATTTTCTATTCAGTTGAGCGT GACGCCGCGCAATGGTTCACTGGCGCTGTACCGGGTGATGTGGGAATTGC GCCGCACGGTAGGAACAAGCTCGGGTGATGGTGAAAATACACCACGGAGT AGATTAAATCCAAATATGTGCAATTTCGAGCTTTTACCTGGGCAAGGGCC ATATGACATACATGGAACAGGTAGCAACACAGTGCTGTTTTTGTGGCAAA GTCATGGAACATCCGTTGGTTTTAACAGCGAAATGTCTCTCAAATTTCCG CGACTTCGTCGGAATTCAGAGCACCCACCTATGATCAGACGTTCGACGGA CAATTATCCAAATGTATCCGGGTTGATGTCTCGTGATTTCTCGTCGGGAG AGCGAGCACCTTTTAGGATTGTAACACCGGTATAAAGTATCTCCAGTCCG GAACAACTTGAAAAAAATGTTCTTAGTTATATATTGAAACATGGCAGTCT ACGAAGACAACGCAGAGCTGAGTTCCGTCATTATTCCCGGGGAGTTTGCT GTTAGAATGAACGACGTAATAATGAACGTATTTTGATGGACGGTAAGCTA GCGATGGACATTTCTATGACATAATTTTTCCAACTGTGACGGAGAAAATG GCGAAAAATTGATGACGTGATTGTTTTATGTGTGATGACTTTTACTCGGC AACTACCGATGAATACATTAAAATGTGCGACAAATGGTACTCTTCTCCAG TACTAGAAGCGTGCCTTTTTCGCATTTTCGAGAAACCCTCGTTGTCGAGA CAACGCCGTATTTATGTTACCATATTCTGGAACCATGAGCAGGATATACC CCGGAACTTGTCCCCGGAGTAACATGTCAACACGGTAAGTCAGGAAATCT TCTCGAATGGTTTGAAGTATTCCAAGTCATGTGTCCATTTGCTACCCATT ATTTATGTTAGTTAGGCTTGTTCAAAGTGCTTTCAATCCTTCCACGAGTG AACCTCACCTTCGTGGGATGCTCTACCGGCAGAACGGCAAGGGGAAACTG TAACTTCTCTACACGATGTGTCCAGGCACGATAGACTCCGCCCTGCTTTG TCCAAATCTGGCCAGAGTGGTCAGCGACTATCGTAAGCCAATTGTCTCAT ATTCAAGCGTGTATTGTGCACATTTTGCTTTTGATCATGCGTTCCGATGG GACGGCGTAACGGGTCTGATACTGGGTCTTAGTTACCCAAGTCCTTGTTG AAAGTTGTCATATTAAACAGCTCCGATTCACGTGATGAAGGTTTCTGTGA CCCCCATGGAGATCAACCCTGAGCGGAACTAGTACATCACTAAAGAGCTG ATTTTTCTTGGAGTTGAACAAACCCAGCTACGGTGATCCAGTTCCCCTGT ATAGGTCCCCATTCCGGCTACTGGCATTGCGTGACGGTTGCTCATGATGT ATGCTCCGATTTGTACCTGCTCGCTCGGTTGCCAAAAGTCACCAGTTATC TTGGGAACAGGTGTCGTTTAGAACGGTATTGCACAATTCCTTTGGTGCCA AGTATGTGGACGTTGAAGGGCTGCAGTATGGACACATGATACGAATGTAT GTTGAAACTTGAGAATGAATTGACGCTGTGATCGATTTCCTTCATGTACC CCCGCTGCGTACATGTGGTTCCATATGTGTGCACAGTATCGTCAACAGAG AAATGACTCGATCGAGGTGGAATCTGCGCTGGCACCCTGTCGCAGACACT GTCGCATGTCCATTTTTTACTGCATGTATGCGAGTCGGGGTTGATGGCAT CGGATATTATTAATTAGACGTTCCTCTGGATTTGTGTGGAATATCTGATT TTGGGAACTTATTTGATACCGCAGGGAATACGAGGGGACAGTGCTGTCGC TCGGAAGTTACGTTTTCCTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig26229:482..2951-

>mRNA_H-paniculata_contig26229.7166.1 ID=mRNA_H-paniculata_contig26229.7166.1|Name=mRNA_H-paniculata_contig26229.7166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig26229:482..2951- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGGGTACAAACAAGGGTGGCCTTGTGATTGGTGCACGGGGAGGGC
GGATGAGGACAGGCCCCCGAGCCTTATCAACCGCATCATCCGCAATGGTC
CGGGCGACTGTGTGCGGGCAGAGAAAATGGTGCTGCCACAAAGTTGGGAC
TTTGCCATGTCTTTTCTCGGTGGCCTTAGCGGGGGCGAAAGATGGCGGGG
TACAAACAAGGGTGGCCTTGTGATTGGTGCACGGGGAGGGCGGATGAGGA
CAGGCCCCCGAGCCTTATCAACCGCATCATCCGCAATGGTCCGGGCGACT
GTGTGCGGGCAGAGAAAATGGTGCTGCCACAAAGTTGGGACTTTGCCATG
TCTTTTCTCGGTGGCCTTAGCGGGGGCGAAAGGCGCTCTGTCCCTTCAAC
GTTGGCGGAAGACCGAGTGCCATCACAAGCGACGCCGAGCGTCAAAACCA
TCGGCACGACGCGCGAGGACCTGCTAGATAAGTGGAGGCACGAGATTGAA
GAGAAGGGATGGACTGTCCCGAACCCCGCGAGCGCGTTAGAAGGGGCGCT
TACCATCAGGCGCTCTGTCCCTTCAACGTTGGCGGAAGACCGAGTGCCAT
CACAAGCGACGCCGAGCGTCAAAACCATCGGCACGACGCGCGAGGACCTG
CTAGATAAGTGGAGGCACGAGATTGAAGAGAAGGGATGGACTGTCCCGAA
CCCCGCGAGCGCGTTAGAAGGGGCGCTTACCATCAGGGAATACGAGGGGA
CAGTGCTGTCGCTCGGAAGTTACGTTTTCCTCGGAATACGAGGGGACAGT
GCTGTCGCTCGGAAGTTACGTTTTCCTC
back to top