prot_H-paniculata_contig26210.7165.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig26210.7165.1
Unique Nameprot_H-paniculata_contig26210.7165.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length91
Homology
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: A0A6H5JKZ3_9PHAE (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.480e-26
Identity = 51/73 (69.86%), Postives = 54/73 (73.97%), Query Frame = 0
Query:    5 SEGGAGTAGCLRTLRGHDHNVSCVAWVPPDGDTLVSCSRDQTIRFWEVATGFCTRTLTGHTDWVRRVALSDDG 77
            SEGGAG A CL+TLRGHDHNVSCVAWVPP GDT             E ATGFCTRTL G ++WVRRVALSDDG
Sbjct:  118 SEGGAGGAECLKTLRGHDHNVSCVAWVPPAGDTXXXXXXXXXXXXXEAATGFCTRTLKGDSEWVRRVALSDDG 190          
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.020e-25
Identity = 51/73 (69.86%), Postives = 54/73 (73.97%), Query Frame = 0
Query:    5 SEGGAGTAGCLRTLRGHDHNVSCVAWVPPDGDTLVSCSRDQTIRFWEVATGFCTRTLTGHTDWVRRVALSDDG 77
            SEGGAG A CL+TLRGHDHNVSCVAWVPP GDT             E ATGFCTRTL G ++WVRRVALSDDG
Sbjct:  184 SEGGAGGAECLKTLRGHDHNVSCVAWVPPAGDTXXXXXXXXXXXXXEAATGFCTRTLKGDSEWVRRVALSDDG 256          
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: A0A5D6Y4C8_9STRA (Lissencephaly-1 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4C8_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.740e-25
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 0
Query:   14 CLRTLRGHDHNVSCVAWVPPDG--DTLVSCSRDQTIRFWEVATGFCTRTLTG-HTDWVRRVALSDDGEMLASCGNDQMV 89
            CL+TLRGHDHNV  V + PP    D L SCSRD T++ WE+ATG+C  TL G H+DWVR VA+SDDG  LASCGND+ +
Sbjct:  195 CLKTLRGHDHNVCGVVFAPPAAGEDLLYSCSRDNTVKVWELATGYCVNTLNGGHSDWVRDVAVSDDGLYLASCGNDRSI 273          
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: A0A2D4CDK0_PYTIN (Lissencephaly-1 homolog n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDK0_PYTIN)

HSP 1 Score: 105 bits (263), Expect = 6.120e-25
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 0
Query:   14 CLRTLRGHDHNVSCVAWVP-PDGDTLVSCSRDQTIRFWEVATGFCTRTLT-GHTDWVRRVALSDDGEMLASCGNDQMV 89
            CL+TLRGHDHNV  +A+ P PD D L SCSRD TI+ WE++TG+C  T+  GH DWVR + +SDDG  LASCGND+ +
Sbjct:  193 CLKTLRGHDHNVCGLAFSPLPDSDRLYSCSRDHTIKVWEISTGYCLHTMNNGHADWVRDICVSDDGLYLASCGNDRSI 270          
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: A0A6L5CYW9_9INSE (LisH domain-containing protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CYW9_9INSE)

HSP 1 Score: 104 bits (259), Expect = 1.280e-24
Identity = 53/110 (48.18%), Postives = 67/110 (60.91%), Query Frame = 0
Query:    1 IWDFSEGGAG---------TAGCLRTLRGHDHNVSCVAWVPPDGDTLVSCSRDQTIRFWEVATG----------FCTRTLTGHTDWVRRVALSDDGEMLASCGNDQMVKV 91
            +WDF  G A          T  CL+T+ GH+HNVS V ++P  GD +VS SRD+TI+ WEVATG          +C +T TGH +WVR V  S DG +LASC NDQ V+V
Sbjct:  129 VWDFENGDADXXXXXXXXQTYECLKTMHGHEHNVSSVCFMP-GGDFIVSSSRDKTIKMWEVATGSDSLTCPCSRYCVKTFTGHREWVRAVRASPDGSLLASCSNDQTVRV 237          
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: M4BL66_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BL66_HYAAE)

HSP 1 Score: 103 bits (258), Expect = 2.610e-24
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 0
Query:   14 CLRTLRGHDHNVSCVAWVPP-DGDTLVSCSRDQTIRFWEVATGFCTRTLTG-HTDWVRRVALSDDGEMLASCGNDQMV 89
            CLRTLRGHDHNV  V + P    D L SCSRD TI+ WE++TG+C  TL G H+DWVR VA+SDDG  LASCGND+ +
Sbjct:  171 CLRTLRGHDHNVCGVVFAPDLASDRLYSCSRDNTIKVWELSTGYCVNTLNGGHSDWVRDVAVSDDGLYLASCGNDRSI 248          
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: A0A329RP37_9STRA (Lissencephaly-1 homolog n=16 Tax=Peronosporaceae TaxID=4777 RepID=A0A329RP37_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.410e-24
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 0
Query:   14 CLRTLRGHDHNVSCVAWVPP-DGDTLVSCSRDQTIRFWEVATGFCTRTLT-GHTDWVRRVALSDDGEMLASCGNDQMV 89
            CLRTLRGHDHNV  + + P    D L SCSRD TI+ WE++TG+C  TL  GHTDWVR VA+SDDG  LASCGND+ +
Sbjct:  192 CLRTLRGHDHNVCGIVFGPDLASDRLYSCSRDNTIKVWELSTGYCVNTLNAGHTDWVRDVAVSDDGLYLASCGNDRSI 269          
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: A0A484E3V1_BRELC (Lissencephaly-1 homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3V1_BRELC)

HSP 1 Score: 103 bits (256), Expect = 6.440e-24
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 0
Query:   14 CLRTLRGHDHNVSCVAWVPP-DGDTLVSCSRDQTIRFWEVATGFCTRTL-TGHTDWVRRVALSDDGEMLASCGNDQMV 89
            CLRTLRGHDHNV  + + P    D L SCSRD TI+ WE++TG+C  TL TGHTDWVR VA+S DG  LASCGND+ +
Sbjct:  192 CLRTLRGHDHNVCGIVFGPDLASDRLYSCSRDNTIKVWELSTGYCVNTLNTGHTDWVRDVAVSHDGLYLASCGNDRSI 269          
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: H3H2U3_PHYRM (Lissencephaly-1 homolog n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3H2U3_PHYRM)

HSP 1 Score: 102 bits (254), Expect = 1.250e-23
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 0
Query:   14 CLRTLRGHDHNVSCVAWVPP-DGDTLVSCSRDQTIRFWEVATGFCTRTLT-GHTDWVRRVALSDDGEMLASCGNDQMV 89
            CLRTLRGHDHNV  + + P    D L SCSRD TI+ WE++TG+C  TL  GH+DWVR VA+SDDG  LASCGND+ +
Sbjct:  192 CLRTLRGHDHNVCGIVFGPDLASDRLYSCSRDNTIKVWELSTGYCVNTLNAGHSDWVRDVAVSDDGLYLASCGNDRSI 269          
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: A0A225W249_9STRA (Lissencephaly-1 homolog n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225W249_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.250e-23
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 0
Query:   14 CLRTLRGHDHNVSCVAWVPP-DGDTLVSCSRDQTIRFWEVATGFCTRTLT-GHTDWVRRVALSDDGEMLASCGNDQMV 89
            CLRTLRGHDHNV  + + P    D L SCSRD TI+ WE++TG+C  TL  GHTDWVR V +SDDG  LASCGND+ +
Sbjct:  192 CLRTLRGHDHNVCGIVFGPDLASDRLYSCSRDNTIKVWELSTGYCVNTLNAGHTDWVRDVTVSDDGLYLASCGNDRSI 269          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKZ3_9PHAE1.480e-2669.86Ge1_WD40 domain-containing protein (Fragment) n=1 ... [more]
D7G1C0_ECTSI1.020e-2569.86Lissencephaly-1 homolog n=1 Tax=Ectocarpus silicul... [more]
A0A5D6Y4C8_9STRA4.740e-2562.03Lissencephaly-1 homolog n=1 Tax=Pythium brassicum ... [more]
A0A2D4CDK0_PYTIN6.120e-2560.26Lissencephaly-1 homolog n=2 Tax=Pythium insidiosum... [more]
A0A6L5CYW9_9INSE1.280e-2448.18LisH domain-containing protein n=1 Tax=Ephemera da... [more]
M4BL66_HYAAE2.610e-2462.82Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A329RP37_9STRA3.410e-2462.82Lissencephaly-1 homolog n=16 Tax=Peronosporaceae T... [more]
A0A484E3V1_BRELC6.440e-2462.82Lissencephaly-1 homolog n=1 Tax=Bremia lactucae Ta... [more]
H3H2U3_PHYRM1.250e-2361.54Lissencephaly-1 homolog n=3 Tax=Peronosporaceae Ta... [more]
A0A225W249_9STRA1.250e-2361.54Lissencephaly-1 homolog n=2 Tax=Phytophthora TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 54..91
e-value: 0.004
score: 26.4
coord: 11..51
e-value: 3.3E-10
score: 49.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 57..91
e-value: 1.3E-6
score: 29.0
coord: 14..50
e-value: 2.0E-10
score: 41.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 61..91
score: 11.244
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 18..60
score: 14.118
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..91
e-value: 4.0E-33
score: 116.5
NoneNo IPR availablePANTHERPTHR44129FAMILY NOT NAMEDcoord: 1..91
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 38..52
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..91
score: 22.623
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 1..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26210contigH-paniculata_contig26210:733..1267 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26210.7165.1mRNA_H-paniculata_contig26210.7165.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig26210 733..1267 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig26210.7165.1 ID=prot_H-paniculata_contig26210.7165.1|Name=mRNA_H-paniculata_contig26210.7165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
IWDFSEGGAGTAGCLRTLRGHDHNVSCVAWVPPDGDTLVSCSRDQTIRFW
EVATGFCTRTLTGHTDWVRRVALSDDGEMLASCGNDQMVKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf