mRNA_H-paniculata_contig26210.7165.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26210.7165.1
Unique NamemRNA_H-paniculata_contig26210.7165.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: A0A6H5JKZ3_9PHAE (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.480e-26
Identity = 51/73 (69.86%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:   13 SEGGAGTAGCLRTLRGHDHNVSCVAWVPPDGDTLVSCSRDQTIRFWEVATGFCTRTLTGHTDWVRRVALSDDG 231
            SEGGAG A CL+TLRGHDHNVSCVAWVPP GDT             E ATGFCTRTL G ++WVRRVALSDDG
Sbjct:  118 SEGGAGGAECLKTLRGHDHNVSCVAWVPPAGDTXXXXXXXXXXXXXEAATGFCTRTLKGDSEWVRRVALSDDG 190
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BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.020e-25
Identity = 51/73 (69.86%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:   13 SEGGAGTAGCLRTLRGHDHNVSCVAWVPPDGDTLVSCSRDQTIRFWEVATGFCTRTLTGHTDWVRRVALSDDG 231
            SEGGAG A CL+TLRGHDHNVSCVAWVPP GDT             E ATGFCTRTL G ++WVRRVALSDDG
Sbjct:  184 SEGGAGGAECLKTLRGHDHNVSCVAWVPPAGDTXXXXXXXXXXXXXEAATGFCTRTLKGDSEWVRRVALSDDG 256
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BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: A0A5D6Y4C8_9STRA (Lissencephaly-1 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4C8_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.740e-25
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:   40 CLRTLRGHDHNVSCVAWVPPDG--DTLVSCSRDQTIRFWEVATGFCTRTLTG-HTDWVRRVALSDDGEMLASCGNDQMV 267
            CL+TLRGHDHNV  V + PP    D L SCSRD T++ WE+ATG+C  TL G H+DWVR VA+SDDG  LASCGND+ +
Sbjct:  195 CLKTLRGHDHNVCGVVFAPPAAGEDLLYSCSRDNTVKVWELATGYCVNTLNGGHSDWVRDVAVSDDGLYLASCGNDRSI 273
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BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: A0A2D4CDK0_PYTIN (Lissencephaly-1 homolog n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDK0_PYTIN)

HSP 1 Score: 105 bits (263), Expect = 6.120e-25
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   40 CLRTLRGHDHNVSCVAWVP-PDGDTLVSCSRDQTIRFWEVATGFCTRTLT-GHTDWVRRVALSDDGEMLASCGNDQMV 267
            CL+TLRGHDHNV  +A+ P PD D L SCSRD TI+ WE++TG+C  T+  GH DWVR + +SDDG  LASCGND+ +
Sbjct:  193 CLKTLRGHDHNVCGLAFSPLPDSDRLYSCSRDHTIKVWEISTGYCLHTMNNGHADWVRDICVSDDGLYLASCGNDRSI 270
[Close]
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: A0A6L5CYW9_9INSE (LisH domain-containing protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CYW9_9INSE)

HSP 1 Score: 104 bits (259), Expect = 1.280e-24
Identity = 53/110 (48.18%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:    1 IWDFSEGGAG---------TAGCLRTLRGHDHNVSCVAWVPPDGDTLVSCSRDQTIRFWEVATG----------FCTRTLTGHTDWVRRVALSDDGEMLASCGNDQMVKV 273
            +WDF  G A          T  CL+T+ GH+HNVS V ++P  GD +VS SRD+TI+ WEVATG          +C +T TGH +WVR V  S DG +LASC NDQ V+V
Sbjct:  129 VWDFENGDADXXXXXXXXQTYECLKTMHGHEHNVSSVCFMP-GGDFIVSSSRDKTIKMWEVATGSDSLTCPCSRYCVKTFTGHREWVRAVRASPDGSLLASCSNDQTVRV 237
[Close]
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: M4BL66_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BL66_HYAAE)

HSP 1 Score: 103 bits (258), Expect = 2.610e-24
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:   40 CLRTLRGHDHNVSCVAWVPP-DGDTLVSCSRDQTIRFWEVATGFCTRTLTG-HTDWVRRVALSDDGEMLASCGNDQMV 267
            CLRTLRGHDHNV  V + P    D L SCSRD TI+ WE++TG+C  TL G H+DWVR VA+SDDG  LASCGND+ +
Sbjct:  171 CLRTLRGHDHNVCGVVFAPDLASDRLYSCSRDNTIKVWELSTGYCVNTLNGGHSDWVRDVAVSDDGLYLASCGNDRSI 248
[Close]
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: A0A329RP37_9STRA (Lissencephaly-1 homolog n=16 Tax=Peronosporaceae TaxID=4777 RepID=A0A329RP37_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.410e-24
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:   40 CLRTLRGHDHNVSCVAWVPP-DGDTLVSCSRDQTIRFWEVATGFCTRTLT-GHTDWVRRVALSDDGEMLASCGNDQMV 267
            CLRTLRGHDHNV  + + P    D L SCSRD TI+ WE++TG+C  TL  GHTDWVR VA+SDDG  LASCGND+ +
Sbjct:  192 CLRTLRGHDHNVCGIVFGPDLASDRLYSCSRDNTIKVWELSTGYCVNTLNAGHTDWVRDVAVSDDGLYLASCGNDRSI 269
[Close]
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: A0A484E3V1_BRELC (Lissencephaly-1 homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3V1_BRELC)

HSP 1 Score: 103 bits (256), Expect = 6.440e-24
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:   40 CLRTLRGHDHNVSCVAWVPP-DGDTLVSCSRDQTIRFWEVATGFCTRTL-TGHTDWVRRVALSDDGEMLASCGNDQMV 267
            CLRTLRGHDHNV  + + P    D L SCSRD TI+ WE++TG+C  TL TGHTDWVR VA+S DG  LASCGND+ +
Sbjct:  192 CLRTLRGHDHNVCGIVFGPDLASDRLYSCSRDNTIKVWELSTGYCVNTLNTGHTDWVRDVAVSHDGLYLASCGNDRSI 269
[Close]
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: H3H2U3_PHYRM (Lissencephaly-1 homolog n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3H2U3_PHYRM)

HSP 1 Score: 102 bits (254), Expect = 1.250e-23
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:   40 CLRTLRGHDHNVSCVAWVPP-DGDTLVSCSRDQTIRFWEVATGFCTRTLT-GHTDWVRRVALSDDGEMLASCGNDQMV 267
            CLRTLRGHDHNV  + + P    D L SCSRD TI+ WE++TG+C  TL  GH+DWVR VA+SDDG  LASCGND+ +
Sbjct:  192 CLRTLRGHDHNVCGIVFGPDLASDRLYSCSRDNTIKVWELSTGYCVNTLNAGHSDWVRDVAVSDDGLYLASCGNDRSI 269
[Close]
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Match: A0A225W249_9STRA (Lissencephaly-1 homolog n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225W249_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.250e-23
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:   40 CLRTLRGHDHNVSCVAWVPP-DGDTLVSCSRDQTIRFWEVATGFCTRTLT-GHTDWVRRVALSDDGEMLASCGNDQMV 267
            CLRTLRGHDHNV  + + P    D L SCSRD TI+ WE++TG+C  TL  GHTDWVR V +SDDG  LASCGND+ +
Sbjct:  192 CLRTLRGHDHNVCGIVFGPDLASDRLYSCSRDNTIKVWELSTGYCVNTLNAGHTDWVRDVTVSDDGLYLASCGNDRSI 269
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26210.7165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKZ3_9PHAE1.480e-2669.86Ge1_WD40 domain-containing protein (Fragment) n=1 ... [more]
D7G1C0_ECTSI1.020e-2569.86Lissencephaly-1 homolog n=1 Tax=Ectocarpus silicul... [more]
A0A5D6Y4C8_9STRA4.740e-2562.03Lissencephaly-1 homolog n=1 Tax=Pythium brassicum ... [more]
A0A2D4CDK0_PYTIN6.120e-2560.26Lissencephaly-1 homolog n=2 Tax=Pythium insidiosum... [more]
A0A6L5CYW9_9INSE1.280e-2448.18LisH domain-containing protein n=1 Tax=Ephemera da... [more]
M4BL66_HYAAE2.610e-2462.82Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A329RP37_9STRA3.410e-2462.82Lissencephaly-1 homolog n=16 Tax=Peronosporaceae T... [more]
A0A484E3V1_BRELC6.440e-2462.82Lissencephaly-1 homolog n=1 Tax=Bremia lactucae Ta... [more]
H3H2U3_PHYRM1.250e-2361.54Lissencephaly-1 homolog n=3 Tax=Peronosporaceae Ta... [more]
A0A225W249_9STRA1.250e-2361.54Lissencephaly-1 homolog n=2 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26210contigH-paniculata_contig26210:733..1267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue6.9e-22
Seed eggNOG ortholog2880.D7G1C0
KEGG rclassRC00037,RC00094
KEGG koko:K16794
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,map00565,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000775,GO:0000776,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005874,GO:0005875,GO:0005938,GO:0007154,GO:0007165,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0017016,GO:0017048,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0023052,GO:0031267,GO:0031592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035556,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044877,GO:0045504,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051179,GO:0051640,GO:0051641,GO:0051642,GO:0051645,GO:0051716,GO:0061842,GO:0065007,GO:0070727,GO:0070840,GO:0071539,GO:0071944,GO:0072698,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1905508
EggNOG free text desc.cell division
EggNOG OGsKOG0295@1,KOG0295@2759
Ec32 ortholog descriptionDynein regulator LIS1
Ec32 orthologEc-00_005540.1
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.737709-CDS-H-paniculata_contig26210:732..8851622929783.737709-CDS-H-paniculata_contig26210:732..885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26210 733..885 +
1691481008.89516-CDS-H-paniculata_contig26210:732..8851691481008.89516-CDS-H-paniculata_contig26210:732..885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26210 733..885 +
1622929783.7494416-CDS-H-paniculata_contig26210:1147..12671622929783.7494416-CDS-H-paniculata_contig26210:1147..1267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26210 1148..1267 +
1691481008.9057467-CDS-H-paniculata_contig26210:1147..12671691481008.9057467-CDS-H-paniculata_contig26210:1147..1267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26210 1148..1267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26210.7165.1prot_H-paniculata_contig26210.7165.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26210 733..1267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26210.7165.1

>prot_H-paniculata_contig26210.7165.1 ID=prot_H-paniculata_contig26210.7165.1|Name=mRNA_H-paniculata_contig26210.7165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
IWDFSEGGAGTAGCLRTLRGHDHNVSCVAWVPPDGDTLVSCSRDQTIRFW
EVATGFCTRTLTGHTDWVRRVALSDDGEMLASCGNDQMVKV
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mRNA from alignment at H-paniculata_contig26210:733..1267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26210.7165.1 ID=mRNA_H-paniculata_contig26210.7165.1|Name=mRNA_H-paniculata_contig26210.7165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=535bp|location=Sequence derived from alignment at H-paniculata_contig26210:733..1267+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTGGGATTTCTCGGAGGGGGGAGCGGGCACAGCGGGGTGTCTGAGGAC
GTTGCGAGGACACGACCACAACGTGTCGTGCGTGGCTTGGGTTCCACCGG
ATGGGGATACATTGGTCTCGTGCTCAAGAGATCAGACCATTAGGTTTTGG
GAGGTGCGTGTTTTGTGAATTCTTGTGCATCGGACAGTCTTCACATTGTG
TTTTTCATGTGCAGGGGCTTGGGCTTGTTTTTTTTCAGGGCTGCGTATTA
TTATTATTAGCCTTGCCCAACAAGAAATCAACAAACGAGATCAACAAGTG
AATAATGTAAGCTAGATGTAATCGGATTCATCACAAATAATTTTGTTTAT
TTGGTTTCTTTCCAAGTTCTATCGCTGTCGCGAATAACAACAACAAAAAA
AACGCTGGAGGACAGGTGGCAACAGGCTTCTGCACGCGTACGTTGACGGG
GCATACGGATTGGGTGAGAAGAGTGGCTTTGAGCGACGACGGGGAGATGC
TGGCCAGTTGCGGCAACGACCAAATGGTCAAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig26210:733..1267+

>mRNA_H-paniculata_contig26210.7165.1 ID=mRNA_H-paniculata_contig26210.7165.1|Name=mRNA_H-paniculata_contig26210.7165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig26210:733..1267+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTGGGATTTCTCGGAGGGGGGAGCGGGCACAGCGGGGTGTCTGAGGAC
GTTGCGAGGACACGACCACAACGTGTCGTGCGTGGCTTGGGTTCCACCGG
ATGGGGATACATTGGTCTCGTGCTCAAGAGATCAGACCATTAGGTTTTGG
GAGATCTGGGATTTCTCGGAGGGGGGAGCGGGCACAGCGGGGTGTCTGAG
GACGTTGCGAGGACACGACCACAACGTGTCGTGCGTGGCTTGGGTTCCAC
CGGATGGGGATACATTGGTCTCGTGCTCAAGAGATCAGACCATTAGGTTT
TGGGAGGTGGCAACAGGCTTCTGCACGCGTACGTTGACGGGGCATACGGA
TTGGGTGAGAAGAGTGGCTTTGAGCGACGACGGGGAGATGCTGGCCAGTT
GCGGCAACGACCAAATGGTCAAGGTGGTGGCAACAGGCTTCTGCACGCGT
ACGTTGACGGGGCATACGGATTGGGTGAGAAGAGTGGCTTTGAGCGACGA
CGGGGAGATGCTGGCCAGTTGCGGCAACGACCAAATGGTCAAGGTG
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